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Gene: Msl3 (MSL complex subunit 3) Rattus norvegicus

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Symbol:

Msl3

Name:

MSL complex subunit 3

RGD ID:

1549763

Description:

Predicted to enable DNA binding activity and histone H4K16ac reader activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within positive regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of MSL complex and NuA4 histone acetyltransferase complex. Human ortholog(s) of this gene implicated in Basilicata-Akhtar syndrome. Orthologous to human MSL3 (MSL complex subunit 3); INTERACTS WITH bisphenol A; C60 fullerene; clofibric acid.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC102547271; LOC317464; male-specific lethal 3 homolog; male-specific lethal 3 homolog (Drosophila); male-specific lethal 3-like 1; male-specific lethal 3-like 1 (Drosophila); male-specific lethal-3 homolog 1; male-specific lethal-3 homolog 1 (Drosophila); Msl31; Msl3l1; similar to Male-specific lethal 3-like 1 (MSL3-like 1) (Male-specific lethal-3 homolog 1)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MSL3 (MSL complex subunit 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Msl3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Msl3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MSL3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MSL3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Msl3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MSL3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MSL3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Msl3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Msl3 (MSL complex subunit 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MSL3B (MSL complex subunit 3B)	HGNC	Panther
Alliance orthologs ³
Mus musculus (house mouse):	Msl3 (MSL complex subunit 3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MSL3 (MSL complex subunit 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MSL3 (MSL complex subunit 3)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	msl-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	msl-3	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	msl3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	29,210,388 - 29,228,060 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	29,210,427 - 29,228,054 (+)	Ensembl				GRCr8
mRatBN7.2	X	25,638,029 - 25,655,698 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	25,637,804 - 25,655,697 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	26,633,073 - 26,650,631 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	30,054,150 - 30,071,708 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	26,296,795 - 26,314,394 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	27,015,826 - 27,033,562 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	27,015,884 - 27,033,555 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	27,420,494 - 27,438,244 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	46,330,790 - 46,348,467 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	26,048,467 - 26,066,050 (+)	NCBI		Celera
Cytogenetic Map	X	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Basilicata-Akhtar syndrome (ISO)

Craniofacial Abnormalities (ISO)

Developmental Disabilities (ISO)

Facies (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Neurodevelopmental Disorders (ISO)

Neurologic Gait Disorders (ISO)

X-linked monogenic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

acrolein (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

C60 fullerene (EXP)

caffeine (ISO)

CGP 52608 (ISO)

clofibric acid (EXP)

crocidolite asbestos (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

folic acid (ISO)

FR900359 (ISO)

gallic acid (ISO)

hexadecanoic acid (ISO)

hydrogen peroxide (ISO)

lead(0) (ISO)

mercury atom (ISO)

mercury(0) (ISO)

N-nitrosodiethylamine (EXP)

ozone (ISO)

paracetamol (ISO)

phenylmercury acetate (ISO)

SB 431542 (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin organization (IEA)

DNA-templated transcription (IEA)

positive regulation of DNA-templated transcription (IEA,ISO)

regulation of DNA-templated transcription (IEA,ISO)

Cellular Component

MSL complex (IBA,IEA,ISO)

NuA4 histone acetyltransferase complex (IBA)

nucleus (IEA,ISO)

Molecular Function

DNA binding (IEA,ISO)

histone H4K16ac reader activity (IEA,ISO)

histone reader activity (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:20018852	PMID:20657587	PMID:30224647

Genomics

Comparative Map Data

Msl3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	29,210,388 - 29,228,060 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	29,210,427 - 29,228,054 (+)	Ensembl				GRCr8
mRatBN7.2	X	25,638,029 - 25,655,698 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	25,637,804 - 25,655,697 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	26,633,073 - 26,650,631 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	30,054,150 - 30,071,708 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	26,296,795 - 26,314,394 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	27,015,826 - 27,033,562 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	27,015,884 - 27,033,555 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	27,420,494 - 27,438,244 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	46,330,790 - 46,348,467 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	26,048,467 - 26,066,050 (+)	NCBI		Celera
Cytogenetic Map	X	q13	NCBI

MSL3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	11,758,159 - 11,775,772 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	11,758,159 - 11,775,772 (+)	Ensembl			hg38	GRCh38
GRCh37	X	11,776,278 - 11,793,891 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	11,686,199 - 11,703,793 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	X	15,904,870 - 15,922,463 (+)	NCBI		Celera
Cytogenetic Map	X	p22.2	NCBI
HuRef	X	9,555,123 - 9,572,080 (+)	NCBI		HuRef
CHM1_1	X	11,806,915 - 11,824,468 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	11,340,708 - 11,358,321 (+)	NCBI		T2T-CHM13v2.0

Msl3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	167,434,263 - 167,456,868 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	167,437,113 - 167,456,894 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	168,651,267 - 168,674,354 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	168,654,117 - 168,673,898 (-)	Ensembl			mm10	GRCm38
MGSCv37	X	165,092,049 - 165,111,834 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	163,998,222 - 164,018,007 (-)	NCBI		MGSCv36	mm8
Celera	X	151,820,966 - 151,840,717 (-)	NCBI		Celera
Cytogenetic Map	X	F5	NCBI
cM Map	X	78.73	NCBI

Msl3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955544	1,523,310 - 1,541,019 (-)	Ensembl
ChiLan1.0	NW_004955544	1,523,369 - 1,541,012 (-)	NCBI	ChiLan1.0	ChiLan1.0

MSL3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	13,557,989 - 13,575,611 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	13,561,702 - 13,579,280 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	4,385,861 - 4,403,467 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	11,676,301 - 11,693,474 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	11,672,109 - 11,693,468 (+)	Ensembl			panPan2	panpan1.1

MSL3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	8,294,797 - 8,311,142 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	8,294,802 - 8,310,751 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	8,251,506 - 8,267,864 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	8,247,326 - 8,263,668 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	8,247,328 - 8,265,173 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	8,231,197 - 8,247,533 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	8,267,557 - 8,283,904 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	8,263,471 - 8,279,825 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Msl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	1,572,031 - 1,587,002 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	1,572,014 - 1,587,011 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	1,572,037 - 1,587,002 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MSL3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	8,519,370 - 8,535,249 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	8,519,366 - 8,535,249 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	9,292,676 - 9,308,561 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MSL3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	10,259,700 - 10,292,097 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	10,259,711 - 10,277,817 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666056	12,009,518 - 12,039,348 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Msl3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624882	2,591,308 - 2,613,049 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624882	2,594,453 - 2,614,076 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Msl3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	28,065,980 - 28,083,302 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Msl3
46 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	171
Count of miRNA genes:	119
Interacting mature miRNAs:	144
Transcripts:	ENSRNOT00000065814
Prediction methods:	Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598873	Memor2	Memory QTL 2	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	X	24470360	44931007	Rat
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	4001493	44939387	Rat
2290375	Gluco34	Glucose level QTL 34	2.75		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	24470360	45082063	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1970440	46970440	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	8111486	53111486	Rat

Markers in Region

RH134099

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	25,650,145 - 25,650,332 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	27,027,857 - 27,028,043	NCBI	Rnor6.0
Rnor_5.0	X	27,432,539 - 27,432,725	UniSTS	Rnor5.0
RGSC_v3.4	X	46,342,917 - 46,343,103	UniSTS	RGSC3.4
Celera	X	26,060,500 - 26,060,686	UniSTS
RH 3.4 Map	X	347.91	UniSTS
Cytogenetic Map	X	q21	UniSTS

RH136838

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	25,655,340 - 25,655,521 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	27,033,205 - 27,033,385	NCBI	Rnor6.0
Rnor_5.0	X	27,437,887 - 27,438,067	UniSTS	Rnor5.0
RGSC_v3.4	X	46,348,114 - 46,348,294	UniSTS	RGSC3.4
Celera	X	26,065,697 - 26,065,877	UniSTS
Cytogenetic Map	X	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256839	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC086548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000065814 ⟹ ENSRNOP00000061187

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	29,210,443 - 29,228,054 (+)	Ensembl
mRatBN7.2 Ensembl	X	25,637,804 - 25,655,697 (+)	Ensembl
Rnor_6.0 Ensembl	X	27,015,884 - 27,033,555 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113748 ⟹ ENSRNOP00000090151

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	29,210,427 - 29,228,054 (+)	Ensembl
mRatBN7.2 Ensembl	X	25,637,804 - 25,655,697 (+)	Ensembl

RefSeq Acc Id:

NM_001014111 ⟹ NP_001014133

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	29,210,464 - 29,228,057 (+)	NCBI
mRatBN7.2	X	25,638,101 - 25,655,694 (+)	NCBI
Rnor_6.0	X	27,015,884 - 27,033,558 (+)	NCBI
Rnor_5.0	X	27,420,494 - 27,438,244 (+)	NCBI
RGSC_v3.4	X	46,330,790 - 46,348,467 (+)	RGD
Celera	X	26,048,467 - 26,066,050 (+)	RGD

Sequence:

show sequence

GAGCAAATGAGCGCGAGCAAGGGCATGAAATTTCAATTCCACTCTGGGGAGAAAGTGCTGTGCT
TCGAGCCTGACCCCACCAAGGCGCGAGTGCTGTACGATGCCAAGTTGGGATAGATGGGCGGCTG
AAGATCATGTGCTACATGATACAGATGAAAACCGAAGATTACAGCGAAAATTGGCCAAAAAGGC
AATAGCTCGCCTGAGAGGCACAGGAAAAAAGAAGAGGCGCTGTAGGTTGCCTGGTGTTGACTCT
GTCTTAAAAAGTGTGCCAGTCAAAGAAAAAACTAAAAATGACGAAAATTCAATAAGCAGCACCT
GTCATGAGAGCTGTGGAGAAAAGAATGGAGGAATAAAAGAACACCGACAACGCCGTATTAAAGT
AAAGACTAAAGGGAAGAAAAAGGTATTGTCTCTGCGCTCAAGAAAGGATATGGATGAGAGGACA
ATCACTATAGAGATCCCTGAAGTTCTCAAGAAGCAGCTTGAGGATGACTGTTACTATATCAACA
GGAGAAAGCGGTTAGTGAAACTTCCATGCCAGACCAACATCATAACAATTTTGGAATCCTATGT
GAAACATTTTGCTATTAATGCAGCCTTTTCAGCCAACGAGAGGCCTCGTCACCATCATGCCATG
ATGCATGCGCACATGAATGTTCACTATGTCCCAGCAGAGAAGAATGTTGACCTTTGTAAGGAGA
TGGTGGATGGATTACGAATAACTTTTGATTATACTCTCCCATTGGTTTTGCTTTATCCATATGA
ACAAACTCAATATAAAAGGGTGACATCGTCAAAATTCTTTCTTCCTATTAAGGAAAGTACCACG
ACAACTAATAGGAGTCAGGAGGAGCTGTCTCCTAGCCCACCTTTGTTGAATCCATCCACACCAC
AGTCTACAGAGAGTCAGCCACCTACTGGTGAACCAGCCACCCCCAAGAGGCGCAAAGCAGAGCC
AGAGGCACTGCAGTCTCTCAGGAGGTCCACGCGGCACAGCACCAACTGTGACAGGCTGTCTGAA
AGCAGCTCGTCACCTCAGCCGAAGCGCAGGCAACAGGACACATCCACCAGCATGCCGAAGCTGT
TTCTGCACTTGGAAAAGAAGACACCTGTGCATAGCAGATCATCTTCCCCCATTCCTCTGACTCC
AAGTAAGGATGGGAGTGCTGTATTCGCTGGCTTCGAAGGGAGAAGAACCAATGAAATCAATGAG
GTACTGTCTTGGAAACTTGTGCCTGACAATTACCCACCAGGAGACCAGCCACCTCCCCCTTCAT
ACATTTATGGTGCACAGCATTTGCTCAGATTATTTGTGAAACTTCCAGAAATCCTTGGGAAGAT
GTCCTTCTCTGAGAAGAATCTGAAGGCTTTACTGAAGCACTTTGATCTCTTTCTGAGGTTTTTA
GCAGAATACCATGATGACTTCTTCCCGGAGTCGGCTTATGTTGCTGCCTGTGAGGCACACTACA
GCACCAAGAACCCCAGGGCAATTTATTAAACTTTTGATGGTTTTGAGAAAACAGCTGCACTATG
TGGCTTTCTATTTTAGGTTCCAGGTGAAGTGTTAATGAGATGCTAGCCCTACCCTGGGGGTACT
CTGACAGAAACAGGCTCTGTTTTTTTGAGTTCTTCACATACTATTATTTCTGTTAAGAATTACT
TTCTGAGCTCAGCATGGTGGTCCATGTCTATGGGGAGGGGGTCGGTTTAATTAATTAATTAATG
GTTTTTAAAAACTGTAATGATGACTTCCTGGGTGCCTGAACGTATTCCAAAGTAACACTGCTAC
ACAAGCTCTGTGTGCCGGCAGGATAAAAACAGCCATAGCTGTCTTCATAGGGATACATTCACGA
CTGTATACTTAGGTTAAACATGGTTCCAGTAGACAGCACCGTTGGTTGTTAGCAAGAGCCACAT
GGTTTGATTATTTGTTAATGTTAAACAAAGATGGTTTTGAAAACTGTTTTCTGTTCAACAGATC
TTAGTCGGTGCTTGGAAGCCGCAAAGCACTCTCAAAGTATTTCTGAGGGAATTGATATTGATGG
CAAACGAGAACATGCAGCTATGCATTGCTTGTAGCAGTTCCCTTTCTCAGAAACATTATTTTTG
TTGCTCTAAATAAAGCATTGCCTGTCTTGTTTGAGATTTTACAGCCATACTCTGCTATGTAATG
TTATAGTTCCTTTTTCTATGAAATGTTATTTTGGGTGATCTAAATAAAGCTTTGCCAGTTTTGT
TTGAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006256835 ⟹ XP_006256897

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	29,210,398 - 29,228,060 (+)	NCBI
mRatBN7.2	X	25,638,034 - 25,655,698 (+)	NCBI
Rnor_6.0	X	27,015,826 - 27,033,562 (+)	NCBI
Rnor_5.0	X	27,420,494 - 27,438,244 (+)	NCBI

Sequence:

show sequence

CCGTCCTCCCCCACCGCACGCACTCCGCCCGCCCCGGAGCCTCGCCCTCCGCCACGATGAGCAA
ATGAGCGCGAGCAAGGGCATGAAATTTCAATTCCACTCTGGGGAGAAAGTGCTGTGCTTCGAGC
CTGACCCCACCAAGGCGCGAGTGCTGTACGATGCCAAGATCATCGATGTTATTATCGGGAAAGA
CGAAAAGGGCAGAAAGATTCCAGAATATCTGATACATTTTAATGGTTGGAACAGCAGTTGGGAT
AGATGGGCGGCTGAAGATCATGTGCTACATGATACAGATGAAAACCGAAGATTACAGCGAAAAT
TGGCCAAAAAGGCAATAGCTCGCCTGAGAGGCACAGGAAAAAAGAAGAGGCGCTGTAGGTTGCC
TGGTGTTGACTCTGTCTTAAAAAGTGTGCCAGTCAAAGAAAAAACTAAAAATGACGAAAATTCA
ATAAGCAGCACCTGTCATGAGAGCTGTGGAGAAAAGAATGGAGGAATAAAAGAACACCGACAAC
GCCGTATTAAAGTAAAGACTAAAGGGAAGAAAAAGGTATTGTCTCTGCGCTCAAGAAAGGATAT
GGATGAGAGGACAATCACTATAGAGATCCCTGAAGTTCTCAAGAAGCAGCTTGAGGATGACTGT
TACTATATCAACAGGAGAAAGCGGTTAGTGAAACTTCCATGCCAGACCAACATCATAACAATTT
TGGAATCCTATGTGAAACATTTTGCTATTAATGCAGCCTTTTCAGCCAACGAGAGGCCTCGTCA
CCATCATGCCATGATGCATGCGCACATGAATGTTCACTATGTCCCAGCAGAGAAGAATGTTGAC
CTTTGTAAGGAGATGGTGGATGGATTACGAATAACTTTTGATTATACTCTCCCATTGGTTTTGC
TTTATCCATATGAACAAACTCAATATAAAAGGGTGACATCGTCAAAATTCTTTCTTCCTATTAA
GGAAAGTACCACGACAACTAATAGGAGTCAGGAGGAGCTGTCTCCTAGCCCACCTTTGTTGAAT
CCATCCACACCACAGTCTACAGAGAGTCAGCCACCTACTGGTGAACCAGCCACCCCCAAGAGGC
GCAAAGCAGAGCCAGAGGCACTGCAGTCTCTCAGGAGGTCCACGCGGCACAGCACCAACTGTGA
CAGGCTGTCTGAAAGCAGCTCGTCACCTCAGCCGAAGCGCAGGCAACAGGACACATCCACCAGC
ATGCCGAAGCTGTTTCTGCACTTGGAAAAGACTCTCTCTGTGACAGAGACACCTGTGCATAGCA
GATCATCTTCCCCCATTCCTCTGACTCCAAGTAAGGATGGGAGTGCTGTATTCGCTGGCTTCGA
AGGGAGAAGAACCAATGAAATCAATGAGGTACTGTCTTGGAAACTTGTGCCTGACAATTACCCA
CCAGGAGACCAGCCACCTCCCCCTTCATACATTTATGGTGCACAGCATTTGCTCAGATTATTTG
TGAAACTTCCAGAAATCCTTGGGAAGATGTCCTTCTCTGAGAAGAATCTGAAGGCTTTACTGAA
GCACTTTGATCTCTTTCTGAGGTTTTTAGCAGAATACCATGATGACTTCTTCCCGGAGTCGGCT
TATGTTGCTGCCTGTGAGGCACACTACAGCACCAAGAACCCCAGGGCAATTTATTAAACTTTTG
ATGGTTTTGAGAAAACAGCTGCACTATGTGGCTTTCTATTTTAGGTTCCAGGTGAAGTGTTAAT
GAGATGCTAGCCCTACCCTGGGGGTACTCTGACAGAAACAGGCTCTGTTTTTTTGAGTTCTTCA
CATACTATTATTTCTGTTAAGAATTACTTTCTGAGCTCAGCATGGTGGTCCATGTCTATGGGGA
GGGGGTCGGTTTAATTAATTAATTAATGGTTTTTAAAAACTGTAATGATGACTTCCTGGGTGCC
TGAACGTATTCCAAAGTAACACTGCTACACAAGCTCTGTGTGCCGGCAGGATAAAAACAGCCAT
AGCTGTCTTCATAGGGATACATTCACGACTGTATACTTAGGTTAAACATGGTTCCAGTAGACAG
CACCGTTGGTTGTTAGCAAGAGCCACATGGTTTGATTATTTGTTAATGTTAAACAAAGATGGTT
TTGAAAACTGTTTTCTGTTCAACAGATCTTAGTCGGTGCTTGGAAGCCGCAAAGCACTCTCAAA
GTATTTCTGAGGGAATTGATATTGATGGCAAACGAGAACATGCAGCTATGCATTGCTTGTAGCA
GTTCCCTTTCTCAGAAACATTATTTTTGTTGCTCTAAATAAAGCATTGCCTGTCTTGTTTGAGA
TTTTACAGCCATACTCTGCTATGTAATGTTATAGTTCCTTTTTCTATGAAATGTTATTTTGGGT
GATCTAAATAAAGCTTTGCCAGTTTTGTTTGAAAGAAG

hide sequence

RefSeq Acc Id:

XM_006256836 ⟹ XP_006256898

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	29,210,401 - 29,228,060 (+)	NCBI
mRatBN7.2	X	25,638,037 - 25,655,698 (+)	NCBI
Rnor_6.0	X	27,015,826 - 27,033,562 (+)	NCBI
Rnor_5.0	X	27,420,494 - 27,438,244 (+)	NCBI

Sequence:

show sequence

CCGTCCTCCCCCACCGCACGCACTCCGCCCGCCCCGGAGCCTCGCCCTCCGCCACGATGAGCAA
ATGAGCGCGAGCAAGGGCATGAAATTTCAATTCCACTCTGGGGAGAAAGTGCTGTGCTTCGAGC
CTGACCCCACCAAGGCGCGAGTGCTGTACGATGCCAAGATCATCGATGTTATTATCGGGAAAGA
CGAAAAGGGCAGAAAGATTCCAGAATATCTGATACATTTTAATGGTTGGAACAGCAGCAGTTGG
GATAGATGGGCGGCTGAAGATCATGTGCTACATGATACAGATGAAAACCGAAGATTACAGCGAA
AATTGGCCAAAAAGGCAATAGCTCGCCTGAGAGGCACAGGAAAAAAGAAGAGGCGCTGTAGGTT
GCCTGGTGTTGACTCTGTCTTAAAAAGTGTGCCAGTCAAAGAAAAAACTAAAAATGACGAAAAT
TCAATAAGCAGCACCTGTCATGAGAGCTGTGGAGAAAAGAATGGAGGAATAAAAGAACACCGAC
AACGCCGTATTAAAGTAAAGACTAAAGGGAAGAAAAAGGTATTGTCTCTGCGCTCAAGAAAGGA
TATGGATGAGAGGACAATCACTATAGAGATCCCTGAAGTTCTCAAGAAGCAGCTTGAGGATGAC
TGTTACTATATCAACAGGAGAAAGCGGTTAGTGAAACTTCCATGCCAGACCAACATCATAACAA
TTTTGGAATCCTATGTGAAACATTTTGCTATTAATGCAGCCTTTTCAGCCAACGAGAGGCCTCG
TCACCATCATGCCATGATGCATGCGCACATGAATGTTCACTATGTCCCAGCAGAGAAGAATGTT
GACCTTTGTAAGGAGATGGTGGATGGATTACGAATAACTTTTGATTATACTCTCCCATTGGTTT
TGCTTTATCCATATGAACAAACTCAATATAAAAGGGTGACATCGTCAAAATTCTTTCTTCCTAT
TAAGGAAAGTACCACGACAACTAATAGGAGTCAGGAGGAGCTGTCTCCTAGCCCACCTTTGTTG
AATCCATCCACACCACAGTCTACAGAGAGTCAGCCACCTACTGGTGAACCAGCCACCCCCAAGA
GGCGCAAAGCAGAGCCAGAGGCACTGCAGTCTCTCAGGAGGTCCACGCGGCACAGCACCAACTG
TGACAGGCTGTCTGAAAGCAGCTCGTCACCTCAGCCGAAGCGCAGGCAACAGGACACATCCACC
AGCATGCCGAAGCTGTTTCTGCACTTGGAAAAGAAGACACCTGTGCATAGCAGATCATCTTCCC
CCATTCCTCTGACTCCAAGTAAGGATGGGAGTGCTGTATTCGCTGGCTTCGAAGGGAGAAGAAC
CAATGAAATCAATGAGGTACTGTCTTGGAAACTTGTGCCTGACAATTACCCACCAGGAGACCAG
CCACCTCCCCCTTCATACATTTATGGTGCACAGCATTTGCTCAGATTATTTGTGAAACTTCCAG
AAATCCTTGGGAAGATGTCCTTCTCTGAGAAGAATCTGAAGGCTTTACTGAAGCACTTTGATCT
CTTTCTGAGGTTTTTAGCAGAATACCATGATGACTTCTTCCCGGAGTCGGCTTATGTTGCTGCC
TGTGAGGCACACTACAGCACCAAGAACCCCAGGGCAATTTATTAAACTTTTGATGGTTTTGAGA
AAACAGCTGCACTATGTGGCTTTCTATTTTAGGTTCCAGGTGAAGTGTTAATGAGATGCTAGCC
CTACCCTGGGGGTACTCTGACAGAAACAGGCTCTGTTTTTTTGAGTTCTTCACATACTATTATT
TCTGTTAAGAATTACTTTCTGAGCTCAGCATGGTGGTCCATGTCTATGGGGAGGGGGTCGGTTT
AATTAATTAATTAATGGTTTTTAAAAACTGTAATGATGACTTCCTGGGTGCCTGAACGTATTCC
AAAGTAACACTGCTACACAAGCTCTGTGTGCCGGCAGGATAAAAACAGCCATAGCTGTCTTCAT
AGGGATACATTCACGACTGTATACTTAGGTTAAACATGGTTCCAGTAGACAGCACCGTTGGTTG
TTAGCAAGAGCCACATGGTTTGATTATTTGTTAATGTTAAACAAAGATGGTTTTGAAAACTGTT
TTCTGTTCAACAGATCTTAGTCGGTGCTTGGAAGCCGCAAAGCACTCTCAAAGTATTTCTGAGG
GAATTGATATTGATGGCAAACGAGAACATGCAGCTATGCATTGCTTGTAGCAGTTCCCTTTCTC
AGAAACATTATTTTTGTTGCTCTAAATAAAGCATTGCCTGTCTTGTTTGAGATTTTACAGCCAT
ACTCTGCTATGTAATGTTATAGTTCCTTTTTCTATGAAATGTTATTTTGGGTGATCTAAATAAA
GCTTTGCCAGTTTTGTTTGAAAGAAG

hide sequence

RefSeq Acc Id:

XM_006256839 ⟹ XP_006256901

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	29,210,398 - 29,228,060 (+)	NCBI
mRatBN7.2	X	25,638,037 - 25,655,698 (+)	NCBI
Rnor_6.0	X	27,015,827 - 27,033,562 (+)	NCBI
Rnor_5.0	X	27,420,494 - 27,438,244 (+)	NCBI

Sequence:

show sequence

CGTCCTCCCCCACCGCACGCACTCCGCCCGCCCCGGAGCCTCGCCCTCCGCCACGATGAGCAAA
TGAGCGCGAGCAAGGGCATGAAATTTCAATTCCACTCTGGGGAGAAAGTGCTGTGCTTCGAGCC
TGACCCCACCAAGGCGCGAGTGCTGTACGATGCCAAGATCATCGATGTTATTATCGGGAAAGAC
GAAAAGGGCAGAAAGATTCCAGAATATCTGATACATTTTAATGGTTGGAACAGCAGTTGGGATA
GATGGGCGGCTGAAGATCATGTGCTACATGATACAGATGAAAACCGAAGATTACAGCGAAAATT
GGCCAAAAAGGCAATAGCTCGCCTGAGAGGCACAGGAAAAAAGAAGAGGCGCTGTAGGTTGCCT
GGTGTTGACTCTGTCTTAAAAAGTGTGCCAGTCAAAGAAAAAACTAAAAATGACGAAAATTCAA
TAAGCAGCACCTGTCATGAGAGCTGTGGAGAAAAGAATGGAGGAATAAAAGAACACCGACAACG
CCGTATTAAAGTAAAGACTAAAGGGAAGAAAAAGGTATTGTCTCTGCGCTCAAGAAAGGATATG
GATGAGAGGACAATCACTATAGAGATCCCTGAAGTTCTCAAGAAGCAGCTTGAGGATGACTGTT
ACTATATCAACAGGAGAAAGCGGTTAGTGAAACTTCCATGCCAGACCAACATCATAACAATTTT
GGAATCCTATGTGAAACATTTTGCTATTAATGCAGCCTTTTCAGCCAACGAGAGGCCTCGTCAC
CATCATGCCATGATGCATGCGCACATGAATGTTCACTATGTCCCAGCAGAGAAGAATGTTGACC
TTTGTAAGGAGATGGTGGATGGATTACGAATAACTTTTGATTATACTCTCCCATTGGTTTTGCT
TTATCCATATGAACAAACTCAATATAAAAGGGTGACATCGTCAAAATTCTTTCTTCCTATTAAG
GAAAGTACCACGACAACTAATAGGAGTCAGGAGGAGCTGTCTCCTAGCCCACCTTTGTTGAATC
CATCCACACCACAGTCTACAGAGAGTCAGCCACCTACTGGTGAACCAGCCACCCCCAAGAGGCG
CAAAGCAGAGCCAGAGGCACTGCAGTCTCTCAGGAGGTCCACGCGGCACAGCACCAACTGTGAC
AGGCTGTCTGAAAGCAGCTCGTCACCTCAGCCGAAGCGCAGGCAACAGGACACATCCACCAGCA
TGCCGAAGCTGTTTCTGCACTTGGAAAAGAAGACACCTGTGCATAGCAGATCATCTTCCCCCAT
TCCTCTGACTCCAAGTAAGGATGGGAGTGCTGTATTCGCTGGCTTCGAAGGGAGAAGAACCAAT
GAAATCAATGAGGTACTGTCTTGGAAACTTGTGCCTGACAATTACCCACCAGGAGACCAGCCAC
CTCCCCCTTCATACATTTATGGTGCACAGCATTTGCTCAGATTATTTGTGAAACTTCCAGAAAT
CCTTGGGAAGATGTCCTTCTCTGAGAAGAATCTGAAGGCTTTACTGAAGCACTTTGATCTCTTT
CTGAGGTTTTTAGCAGAATACCATGATGACTTCTTCCCGGAGTCGGCTTATGTTGCTGCCTGTG
AGGCACACTACAGCACCAAGAACCCCAGGGCAATTTATTAAACTTTTGATGGTTTTGAGAAAAC
AGCTGCACTATGTGGCTTTCTATTTTAGGTTCCAGGTGAAGTGTTAATGAGATGCTAGCCCTAC
CCTGGGGGTACTCTGACAGAAACAGGCTCTGTTTTTTTGAGTTCTTCACATACTATTATTTCTG
TTAAGAATTACTTTCTGAGCTCAGCATGGTGGTCCATGTCTATGGGGAGGGGGTCGGTTTAATT
AATTAATTAATGGTTTTTAAAAACTGTAATGATGACTTCCTGGGTGCCTGAACGTATTCCAAAG
TAACACTGCTACACAAGCTCTGTGTGCCGGCAGGATAAAAACAGCCATAGCTGTCTTCATAGGG
ATACATTCACGACTGTATACTTAGGTTAAACATGGTTCCAGTAGACAGCACCGTTGGTTGTTAG
CAAGAGCCACATGGTTTGATTATTTGTTAATGTTAAACAAAGATGGTTTTGAAAACTGTTTTCT
GTTCAACAGATCTTAGTCGGTGCTTGGAAGCCGCAAAGCACTCTCAAAGTATTTCTGAGGGAAT
TGATATTGATGGCAAACGAGAACATGCAGCTATGCATTGCTTGTAGCAGTTCCCTTTCTCAGAA
ACATTATTTTTGTTGCTCTAAATAAAGCATTGCCTGTCTTGTTTGAGATTTTACAGCCATACTC
TGCTATGTAATGTTATAGTTCCTTTTTCTATGAAATGTTATTTTGGGTGATCTAAATAAAGCTT
TGCCAGTTTTGTTTGAAAGAAG

hide sequence

RefSeq Acc Id:

XM_008773169 ⟹ XP_008771391

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	29,210,398 - 29,228,060 (+)	NCBI
mRatBN7.2	X	25,638,034 - 25,655,698 (+)	NCBI
Rnor_6.0	X	27,015,826 - 27,033,562 (+)	NCBI

Sequence:

show sequence

CCGTCCTCCCCCACCGCACGCACTCCGCCCGCCCCGGAGCCTCGCCCTCCGCCACGATGAGCAA
ATGAGCGCGAGCAAGGGCATGAAATTTCAATTCCACTCTGGGGAGAAAGTGCTGTGCTTCGAGC
CTGACCCCACCAAGGCGCGAGTGCTGTACGATGCCAAGATCATCGATGTTATTATCGGGAAAGA
CGAAAAGGGCAGAAAGATTCCAGAATATCTGATACATTTTAATGGTTGGAACAGCAGCAGTTGG
GATAGATGGGCGGCTGAAGATCATGTGCTACATGATACAGATGAAAACCGAAGATTACAGCGAA
AATTGGCCAAAAAGGCAATAGCTCGCCTGAGAGGCACAGGAAAAAAGAAGAGGCGCTGTAGGTT
GCCTGGTGTTGACTCTGTCTTAAAAAGTGTGCCAGTCAAAGAAAAAACTAAAAATGACGAAAAT
TCAATAAGCAGCACCTGTCATGAGAGCTGTGGAGAAAAGAATGGAGGAATAAAAGAACACCGAC
AACGCCGTATTAAAGTAAAGACTAAAGGGAAGAAAAAGGTATTGTCTCTGCGCTCAAGAAAGGA
TATGGATGAGAGGACAATCACTATAGAGATCCCTGAAGTTCTCAAGAAGCAGCTTGAGGATGAC
TGTTACTATATCAACAGGAGAAAGCGGTTAGTGAAACTTCCATGCCAGACCAACATCATAACAA
TTTTGGAATCCTATGTGAAACATTTTGCTATTAATGCAGCCTTTTCAGCCAACGAGAGGCCTCG
TCACCATCATGCCATGATGCATGCGCACATGAATGTTCACTATGTCCCAGCAGAGAAGAATGTT
GACCTTTGTAAGGAGATGGTGGATGGATTACGAATAACTTTTGATTATACTCTCCCATTGGTTT
TGCTTTATCCATATGAACAAACTCAATATAAAAGGGTGACATCGTCAAAATTCTTTCTTCCTAT
TAAGGAAAGTACCACGACAACTAATAGGAGTCAGGAGGAGCTGTCTCCTAGCCCACCTTTGTTG
AATCCATCCACACCACAGTCTACAGAGAGTCAGCCACCTACTGGTGAACCAGCCACCCCCAAGA
GGCGCAAAGCAGAGCCAGAGGCACTGCAGTCTCTCAGGAGGTCCACGCGGCACAGCACCAACTG
TGACAGGCTGTCTGAAAGCAGCTCGTCACCTCAGCCGAAGCGCAGGCAACAGGACACATCCACC
AGCATGCCGAAGCTGTTTCTGCACTTGGAAAAGACTCTCTCTGTGACAGAGACACCTGTGCATA
GCAGATCATCTTCCCCCATTCCTCTGACTCCAAGTAAGGATGGGAGTGCTGTATTCGCTGGCTT
CGAAGGGAGAAGAACCAATGAAATCAATGAGGTACTGTCTTGGAAACTTGTGCCTGACAATTAC
CCACCAGGAGACCAGCCACCTCCCCCTTCATACATTTATGGTGCACAGCATTTGCTCAGATTAT
TTGTGAAACTTCCAGAAATCCTTGGGAAGATGTCCTTCTCTGAGAAGAATCTGAAGGCTTTACT
GAAGCACTTTGATCTCTTTCTGAGGTTTTTAGCAGAATACCATGATGACTTCTTCCCGGAGTCG
GCTTATGTTGCTGCCTGTGAGGCACACTACAGCACCAAGAACCCCAGGGCAATTTATTAAACTT
TTGATGGTTTTGAGAAAACAGCTGCACTATGTGGCTTTCTATTTTAGGTTCCAGGTGAAGTGTT
AATGAGATGCTAGCCCTACCCTGGGGGTACTCTGACAGAAACAGGCTCTGTTTTTTTGAGTTCT
TCACATACTATTATTTCTGTTAAGAATTACTTTCTGAGCTCAGCATGGTGGTCCATGTCTATGG
GGAGGGGGTCGGTTTAATTAATTAATTAATGGTTTTTAAAAACTGTAATGATGACTTCCTGGGT
GCCTGAACGTATTCCAAAGTAACACTGCTACACAAGCTCTGTGTGCCGGCAGGATAAAAACAGC
CATAGCTGTCTTCATAGGGATACATTCACGACTGTATACTTAGGTTAAACATGGTTCCAGTAGA
CAGCACCGTTGGTTGTTAGCAAGAGCCACATGGTTTGATTATTTGTTAATGTTAAACAAAGATG
GTTTTGAAAACTGTTTTCTGTTCAACAGATCTTAGTCGGTGCTTGGAAGCCGCAAAGCACTCTC
AAAGTATTTCTGAGGGAATTGATATTGATGGCAAACGAGAACATGCAGCTATGCATTGCTTGTA
GCAGTTCCCTTTCTCAGAAACATTATTTTTGTTGCTCTAAATAAAGCATTGCCTGTCTTGTTTG
AGATTTTACAGCCATACTCTGCTATGTAATGTTATAGTTCCTTTTTCTATGAAATGTTATTTTG
GGTGATCTAAATAAAGCTTTGCCAGTTTTGTTTGAAAGAAG

hide sequence

RefSeq Acc Id:

XM_017602075 ⟹ XP_017457564

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	29,210,388 - 29,228,060 (+)	NCBI
mRatBN7.2	X	25,638,056 - 25,655,698 (+)	NCBI
Rnor_6.0	X	27,015,876 - 27,033,562 (+)	NCBI

Sequence:

show sequence

GCCACGATGAGCAAATGAGCGCGAGCAAGGGCATGAAATTTCAATTCCACTCTGGGGAGAAAGT
GCTGTGCTTCGAGCCTGACCCCACCAAGGCGCGAGTGCTGTACGATGCCAAGCAGTTGGGATAG
ATGGGCGGCTGAAGATCATGTGCTACATGATACAGATGAAAACCGAAGATTACAGCGAAAATTG
GCCAAAAAGGCAATAGCTCGCCTGAGAGGCACAGGAAAAAAGAAGAGGCGCTGTAGGTTGCCTG
GTGTTGACTCTGTCTTAAAAAGTGTGCCAGTCAAAGAAAAAACTAAAAATGACGAAAATTCAAT
AAGCAGCACCTGTCATGAGAGCTGTGGAGAAAAGAATGGAGGAATAAAAGAACACCGACAACGC
CGTATTAAAGTAAAGACTAAAGGGAAGAAAAAGGTATTGTCTCTGCGCTCAAGAAAGGATATGG
ATGAGAGGACAATCACTATAGAGATCCCTGAAGTTCTCAAGAAGCAGCTTGAGGATGACTGTTA
CTATATCAACAGGAGAAAGCGGTTAGTGAAACTTCCATGCCAGACCAACATCATAACAATTTTG
GAATCCTATGTGAAACATTTTGCTATTAATGCAGCCTTTTCAGCCAACGAGAGGCCTCGTCACC
ATCATGCCATGATGCATGCGCACATGAATGTTCACTATGTCCCAGCAGAGAAGAATGTTGACCT
TTGTAAGGAGATGGTGGATGGATTACGAATAACTTTTGATTATACTCTCCCATTGGTTTTGCTT
TATCCATATGAACAAACTCAATATAAAAGGGTGACATCGTCAAAATTCTTTCTTCCTATTAAGG
AAAGTACCACGACAACTAATAGGAGTCAGGAGGAGCTGTCTCCTAGCCCACCTTTGTTGAATCC
ATCCACACCACAGTCTACAGAGAGTCAGCCACCTACTGGTGAACCAGCCACCCCCAAGAGGCGC
AAAGCAGAGCCAGAGGCACTGCAGTCTCTCAGGAGGTCCACGCGGCACAGCACCAACTGTGACA
GGCTGTCTGAAAGCAGCTCGTCACCTCAGCCGAAGCGCAGGCAACAGGACACATCCACCAGCAT
GCCGAAGCTGTTTCTGCACTTGGAAAAGACTCTCTCTGTGACAGAGACACCTGTGCATAGCAGA
TCATCTTCCCCCATTCCTCTGACTCCAAGTAAGGATGGGAGTGCTGTATTCGCTGGCTTCGAAG
GGAGAAGAACCAATGAAATCAATGAGGTACTGTCTTGGAAACTTGTGCCTGACAATTACCCACC
AGGAGACCAGCCACCTCCCCCTTCATACATTTATGGTGCACAGCATTTGCTCAGATTATTTGTG
AAACTTCCAGAAATCCTTGGGAAGATGTCCTTCTCTGAGAAGAATCTGAAGGCTTTACTGAAGC
ACTTTGATCTCTTTCTGAGGTTTTTAGCAGAATACCATGATGACTTCTTCCCGGAGTCGGCTTA
TGTTGCTGCCTGTGAGGCACACTACAGCACCAAGAACCCCAGGGCAATTTATTAAACTTTTGAT
GGTTTTGAGAAAACAGCTGCACTATGTGGCTTTCTATTTTAGGTTCCAGGTGAAGTGTTAATGA
GATGCTAGCCCTACCCTGGGGGTACTCTGACAGAAACAGGCTCTGTTTTTTTGAGTTCTTCACA
TACTATTATTTCTGTTAAGAATTACTTTCTGAGCTCAGCATGGTGGTCCATGTCTATGGGGAGG
GGGTCGGTTTAATTAATTAATTAATGGTTTTTAAAAACTGTAATGATGACTTCCTGGGTGCCTG
AACGTATTCCAAAGTAACACTGCTACACAAGCTCTGTGTGCCGGCAGGATAAAAACAGCCATAG
CTGTCTTCATAGGGATACATTCACGACTGTATACTTAGGTTAAACATGGTTCCAGTAGACAGCA
CCGTTGGTTGTTAGCAAGAGCCACATGGTTTGATTATTTGTTAATGTTAAACAAAGATGGTTTT
GAAAACTGTTTTCTGTTCAACAGATCTTAGTCGGTGCTTGGAAGCCGCAAAGCACTCTCAAAGT
ATTTCTGAGGGAATTGATATTGATGGCAAACGAGAACATGCAGCTATGCATTGCTTGTAGCAGT
TCCCTTTCTCAGAAACATTATTTTTGTTGCTCTAAATAAAGCATTGCCTGTCTTGTTTGAGATT
TTACAGCCATACTCTGCTATGTAATGTTATAGTTCCTTTTTCTATGAAATGTTATTTTGGGTGA
TCTAAATAAAGCTTTGCCAGTTTTGTTTGAAAGAAG

hide sequence

RefSeq Acc Id:

XM_017602077 ⟹ XP_017457566

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	29,210,393 - 29,228,060 (+)	NCBI
mRatBN7.2	X	25,638,051 - 25,655,698 (+)	NCBI
Rnor_6.0	X	27,015,861 - 27,033,562 (+)	NCBI

Sequence:

show sequence

GGAGCCTCGCCCTCCGCCACGATGAGCAAATGAGCGCGAGCAAGGGCATGAAATTTCAATTCCA
CTCTGGGGAGAAAGTGCTGTGCTTCGAGCCTGACCCCACCAAGGCGCGAGTGCTGTACGATGCC
AAGTTGGGATAGATGGGCGGCTGAAGATCATGTGCTACATGATACAGATGAAAACCGAAGATTA
CAGCGAAAATTGGCCAAAAAGGCAATAGCTCGCCTGAGAGGCACAGGAAAAAAGAAGAGGCGCT
GTAGGTTGCCTGGTGTTGACTCTGTCTTAAAAAGTGTGCCAGTCAAAGAAAAAACTAAAAATGA
CGAAAATTCAATAAGCAGCACCTGTCATGAGAGCTGTGGAGAAAAGAATGGAGGAATAAAAGAA
CACCGACAACGCCGTATTAAAGTAAAGACTAAAGGGAAGAAAAAGGTATTGTCTCTGCGCTCAA
GAAAGGATATGGATGAGAGGACAATCACTATAGAGATCCCTGAAGTTCTCAAGAAGCAGCTTGA
GGATGACTGTTACTATATCAACAGGAGAAAGCGGTTAGTGAAACTTCCATGCCAGACCAACATC
ATAACAATTTTGGAATCCTATGTGAAACATTTTGCTATTAATGCAGCCTTTTCAGCCAACGAGA
GGCCTCGTCACCATCATGCCATGATGCATGCGCACATGAATGTTCACTATGTCCCAGCAGAGAA
GAATGTTGACCTTTGTAAGGAGATGGTGGATGGATTACGAATAACTTTTGATTATACTCTCCCA
TTGGTTTTGCTTTATCCATATGAACAAACTCAATATAAAAGGGTGACATCGTCAAAATTCTTTC
TTCCTATTAAGGAAAGTACCACGACAACTAATAGGAGTCAGGAGGAGCTGTCTCCTAGCCCACC
TTTGTTGAATCCATCCACACCACAGTCTACAGAGAGTCAGCCACCTACTGGTGAACCAGCCACC
CCCAAGAGGCGCAAAGCAGAGCCAGAGGCACTGCAGTCTCTCAGGAGGTCCACGCGGCACAGCA
CCAACTGTGACAGGCTGTCTGAAAGCAGCTCGTCACCTCAGCCGAAGCGCAGGCAACAGGACAC
ATCCACCAGCATGCCGAAGCTGTTTCTGCACTTGGAAAAGACTCTCTCTGTGACAGAGACACCT
GTGCATAGCAGATCATCTTCCCCCATTCCTCTGACTCCAAGTAAGGATGGGAGTGCTGTATTCG
CTGGCTTCGAAGGGAGAAGAACCAATGAAATCAATGAGGTACTGTCTTGGAAACTTGTGCCTGA
CAATTACCCACCAGGAGACCAGCCACCTCCCCCTTCATACATTTATGGTGCACAGCATTTGCTC
AGATTATTTGTGAAACTTCCAGAAATCCTTGGGAAGATGTCCTTCTCTGAGAAGAATCTGAAGG
CTTTACTGAAGCACTTTGATCTCTTTCTGAGGTTTTTAGCAGAATACCATGATGACTTCTTCCC
GGAGTCGGCTTATGTTGCTGCCTGTGAGGCACACTACAGCACCAAGAACCCCAGGGCAATTTAT
TAAACTTTTGATGGTTTTGAGAAAACAGCTGCACTATGTGGCTTTCTATTTTAGGTTCCAGGTG
AAGTGTTAATGAGATGCTAGCCCTACCCTGGGGGTACTCTGACAGAAACAGGCTCTGTTTTTTT
GAGTTCTTCACATACTATTATTTCTGTTAAGAATTACTTTCTGAGCTCAGCATGGTGGTCCATG
TCTATGGGGAGGGGGTCGGTTTAATTAATTAATTAATGGTTTTTAAAAACTGTAATGATGACTT
CCTGGGTGCCTGAACGTATTCCAAAGTAACACTGCTACACAAGCTCTGTGTGCCGGCAGGATAA
AAACAGCCATAGCTGTCTTCATAGGGATACATTCACGACTGTATACTTAGGTTAAACATGGTTC
CAGTAGACAGCACCGTTGGTTGTTAGCAAGAGCCACATGGTTTGATTATTTGTTAATGTTAAAC
AAAGATGGTTTTGAAAACTGTTTTCTGTTCAACAGATCTTAGTCGGTGCTTGGAAGCCGCAAAG
CACTCTCAAAGTATTTCTGAGGGAATTGATATTGATGGCAAACGAGAACATGCAGCTATGCATT
GCTTGTAGCAGTTCCCTTTCTCAGAAACATTATTTTTGTTGCTCTAAATAAAGCATTGCCTGTC
TTGTTTGAGATTTTACAGCCATACTCTGCTATGTAATGTTATAGTTCCTTTTTCTATGAAATGT
TATTTTGGGTGATCTAAATAAAGCTTTGCCAGTTTTGTTTGAAAGAAG

hide sequence

RefSeq Acc Id:

XM_039099827 ⟹ XP_038955755

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	29,210,780 - 29,228,060 (+)	NCBI
mRatBN7.2	X	25,638,354 - 25,655,698 (+)	NCBI

RefSeq Acc Id:

XM_039099828 ⟹ XP_038955756

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	29,210,780 - 29,228,060 (+)	NCBI
mRatBN7.2	X	25,638,359 - 25,655,698 (+)	NCBI

RefSeq Acc Id:

XM_063280077 ⟹ XP_063136147

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	29,210,779 - 29,228,060 (+)	NCBI

RefSeq Acc Id:

XM_063280078 ⟹ XP_063136148

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	29,210,388 - 29,228,060 (+)	NCBI

RefSeq Acc Id:

XM_063280079 ⟹ XP_063136149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	29,210,395 - 29,221,290 (+)	NCBI

RefSeq Acc Id:

XM_063280080 ⟹ XP_063136150

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	29,210,854 - 29,228,060 (+)	NCBI

RefSeq Acc Id:

XM_063280081 ⟹ XP_063136151

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	29,211,241 - 29,228,060 (+)	NCBI

RefSeq Acc Id:

XR_005497991

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	29,210,392 - 29,219,572 (+)	NCBI
mRatBN7.2	X	25,638,030 - 25,647,209 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014133	(Get FASTA)	NCBI Sequence Viewer
	NP_001421141	(Get FASTA)	NCBI Sequence Viewer
	NP_001421142	(Get FASTA)	NCBI Sequence Viewer
	NP_001421143	(Get FASTA)	NCBI Sequence Viewer
	NP_001421144	(Get FASTA)	NCBI Sequence Viewer
	XP_006256897	(Get FASTA)	NCBI Sequence Viewer
	XP_006256898	(Get FASTA)	NCBI Sequence Viewer
	XP_006256901	(Get FASTA)	NCBI Sequence Viewer
	XP_008771391	(Get FASTA)	NCBI Sequence Viewer
	XP_017457564	(Get FASTA)	NCBI Sequence Viewer
	XP_017457566	(Get FASTA)	NCBI Sequence Viewer
	XP_038955755	(Get FASTA)	NCBI Sequence Viewer
	XP_038955756	(Get FASTA)	NCBI Sequence Viewer
	XP_063136147	(Get FASTA)	NCBI Sequence Viewer
	XP_063136148	(Get FASTA)	NCBI Sequence Viewer
	XP_063136149	(Get FASTA)	NCBI Sequence Viewer
	XP_063136150	(Get FASTA)	NCBI Sequence Viewer
	XP_063136151	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86548	(Get FASTA)	NCBI Sequence Viewer
	EDL90575	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061187
	ENSRNOP00000061187.3
	ENSRNOP00000090151
	ENSRNOP00000090151.1

RefSeq Acc Id:

NP_001014133 ⟸ NM_001014111

- UniProtKB:

Q5RJQ2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPSWDRWAAEDHVLHDTDENRRLQRKLAKKAIARLRGTGKKKRRCRLPGVDSVLKSVPVKEKTK
NDENSISSTCHESCGEKNGGIKEHRQRRIKVKTKGKKKVLSLRSRKDMDERTITIEIPEVLKKQ
LEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMMHAHMNVHYVPA
EKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQTQYKRVTSSKFFLPIKESTTTTNRSQEELSPS
PPLLNPSTPQSTESQPPTGEPATPKRRKAEPEALQSLRRSTRHSTNCDRLSESSSSPQPKRRQQ
DTSTSMPKLFLHLEKKTPVHSRSSSPIPLTPSKDGSAVFAGFEGRRTNEINEVLSWKLVPDNYP
PGDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFLAEYHDDFFPESA
YVAACEAHYSTKNPRAIY

hide sequence

RefSeq Acc Id:

XP_006256898 ⟸ XM_006256836

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSASKGMKFQFHSGEKVLCFEPDPTKARVLYDAKIIDVIIGKDEKGRKIPEYLIHFNGWNSSSW
DRWAAEDHVLHDTDENRRLQRKLAKKAIARLRGTGKKKRRCRLPGVDSVLKSVPVKEKTKNDEN
SISSTCHESCGEKNGGIKEHRQRRIKVKTKGKKKVLSLRSRKDMDERTITIEIPEVLKKQLEDD
CYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMMHAHMNVHYVPAEKNV
DLCKEMVDGLRITFDYTLPLVLLYPYEQTQYKRVTSSKFFLPIKESTTTTNRSQEELSPSPPLL
NPSTPQSTESQPPTGEPATPKRRKAEPEALQSLRRSTRHSTNCDRLSESSSSPQPKRRQQDTST
SMPKLFLHLEKKTPVHSRSSSPIPLTPSKDGSAVFAGFEGRRTNEINEVLSWKLVPDNYPPGDQ
PPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFLAEYHDDFFPESAYVAA
CEAHYSTKNPRAIY

hide sequence

RefSeq Acc Id:

XP_006256897 ⟸ XM_006256835

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSASKGMKFQFHSGEKVLCFEPDPTKARVLYDAKIIDVIIGKDEKGRKIPEYLIHFNGWNSSWD
RWAAEDHVLHDTDENRRLQRKLAKKAIARLRGTGKKKRRCRLPGVDSVLKSVPVKEKTKNDENS
ISSTCHESCGEKNGGIKEHRQRRIKVKTKGKKKVLSLRSRKDMDERTITIEIPEVLKKQLEDDC
YYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMMHAHMNVHYVPAEKNVD
LCKEMVDGLRITFDYTLPLVLLYPYEQTQYKRVTSSKFFLPIKESTTTTNRSQEELSPSPPLLN
PSTPQSTESQPPTGEPATPKRRKAEPEALQSLRRSTRHSTNCDRLSESSSSPQPKRRQQDTSTS
MPKLFLHLEKTLSVTETPVHSRSSSPIPLTPSKDGSAVFAGFEGRRTNEINEVLSWKLVPDNYP
PGDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFLAEYHDDFFPESA
YVAACEAHYSTKNPRAIY

hide sequence

RefSeq Acc Id:

XP_006256901 ⟸ XM_006256839

- Peptide Label:

isoform X4

- Sequence:

show sequence

MSASKGMKFQFHSGEKVLCFEPDPTKARVLYDAKIIDVIIGKDEKGRKIPEYLIHFNGWNSSWD
RWAAEDHVLHDTDENRRLQRKLAKKAIARLRGTGKKKRRCRLPGVDSVLKSVPVKEKTKNDENS
ISSTCHESCGEKNGGIKEHRQRRIKVKTKGKKKVLSLRSRKDMDERTITIEIPEVLKKQLEDDC
YYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMMHAHMNVHYVPAEKNVD
LCKEMVDGLRITFDYTLPLVLLYPYEQTQYKRVTSSKFFLPIKESTTTTNRSQEELSPSPPLLN
PSTPQSTESQPPTGEPATPKRRKAEPEALQSLRRSTRHSTNCDRLSESSSSPQPKRRQQDTSTS
MPKLFLHLEKKTPVHSRSSSPIPLTPSKDGSAVFAGFEGRRTNEINEVLSWKLVPDNYPPGDQP
PPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFLAEYHDDFFPESAYVAAC
EAHYSTKNPRAIY

hide sequence

RefSeq Acc Id:

XP_008771391 ⟸ XM_008773169

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSASKGMKFQFHSGEKVLCFEPDPTKARVLYDAKIIDVIIGKDEKGRKIPEYLIHFNGWNSSSW
DRWAAEDHVLHDTDENRRLQRKLAKKAIARLRGTGKKKRRCRLPGVDSVLKSVPVKEKTKNDEN
SISSTCHESCGEKNGGIKEHRQRRIKVKTKGKKKVLSLRSRKDMDERTITIEIPEVLKKQLEDD
CYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMMHAHMNVHYVPAEKNV
DLCKEMVDGLRITFDYTLPLVLLYPYEQTQYKRVTSSKFFLPIKESTTTTNRSQEELSPSPPLL
NPSTPQSTESQPPTGEPATPKRRKAEPEALQSLRRSTRHSTNCDRLSESSSSPQPKRRQQDTST
SMPKLFLHLEKTLSVTETPVHSRSSSPIPLTPSKDGSAVFAGFEGRRTNEINEVLSWKLVPDNY
PPGDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFLAEYHDDFFPES
AYVAACEAHYSTKNPRAIY

hide sequence

RefSeq Acc Id:

XP_017457566 ⟸ XM_017602077

- Peptide Label:

isoform X9

- Sequence:

show sequence

MPSWDRWAAEDHVLHDTDENRRLQRKLAKKAIARLRGTGKKKRRCRLPGVDSVLKSVPVKEKTK
NDENSISSTCHESCGEKNGGIKEHRQRRIKVKTKGKKKVLSLRSRKDMDERTITIEIPEVLKKQ
LEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMMHAHMNVHYVPA
EKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQTQYKRVTSSKFFLPIKESTTTTNRSQEELSPS
PPLLNPSTPQSTESQPPTGEPATPKRRKAEPEALQSLRRSTRHSTNCDRLSESSSSPQPKRRQQ
DTSTSMPKLFLHLEKTLSVTETPVHSRSSSPIPLTPSKDGSAVFAGFEGRRTNEINEVLSWKLV
PDNYPPGDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFLAEYHDDF
FPESAYVAACEAHYSTKNPRAIY

hide sequence

RefSeq Acc Id:

XP_017457564 ⟸ XM_017602075

- Peptide Label:

isoform X8

- Sequence:

show sequence

MPSSWDRWAAEDHVLHDTDENRRLQRKLAKKAIARLRGTGKKKRRCRLPGVDSVLKSVPVKEKT
KNDENSISSTCHESCGEKNGGIKEHRQRRIKVKTKGKKKVLSLRSRKDMDERTITIEIPEVLKK
QLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHAMMHAHMNVHYVP
AEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQTQYKRVTSSKFFLPIKESTTTTNRSQEELSP
SPPLLNPSTPQSTESQPPTGEPATPKRRKAEPEALQSLRRSTRHSTNCDRLSESSSSPQPKRRQ
QDTSTSMPKLFLHLEKTLSVTETPVHSRSSSPIPLTPSKDGSAVFAGFEGRRTNEINEVLSWKL
VPDNYPPGDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFLAEYHDD
FFPESAYVAACEAHYSTKNPRAIY

hide sequence

Ensembl Acc Id:

ENSRNOP00000061187 ⟸ ENSRNOT00000065814

RefSeq Acc Id:	XP_038955755 ⟸ XM_039099827
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038955756 ⟸ XM_039099828
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000090151 ⟸ ENSRNOT00000113748

RefSeq Acc Id:	XP_063136148 ⟸ XM_063280078
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063136149 ⟸ XM_063280079
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063136147 ⟸ XM_063280077
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063136150 ⟸ XM_063280080
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063136151 ⟸ XM_063280081
- Peptide Label:	isoform X13

Protein Domains

Chromo MRG

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5RJQ2-F1-model_v2	AlphaFold	Q5RJQ2	1-466	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701783

Promoter ID:

EPDNEW_R12306

Type:

initiation region

Name:

Msl3_1

Description:

MSL complex subunit 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	27,015,847 - 27,015,907	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1549763	AgrOrtholog
BioCyc Gene	G2FUF-2671	BioCyc
Ensembl Genes	ENSRNOG00000004016	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000065814	ENTREZGENE
	ENSRNOT00000065814.3	UniProtKB/TrEMBL
	ENSRNOT00000113748	ENTREZGENE
	ENSRNOT00000113748.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.274.30	UniProtKB/TrEMBL
	2.30.30.140	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7301795	IMAGE-MGC_LOAD
InterPro	Chromo/chromo_shadow_dom	UniProtKB/TrEMBL
	Chromodomain-like	UniProtKB/TrEMBL
	MRG	UniProtKB/TrEMBL
	MRG_C_sf	UniProtKB/TrEMBL
	MRG_dom	UniProtKB/TrEMBL
	MSL3_chromo-like	UniProtKB/TrEMBL
KEGG Report	rno:317464	UniProtKB/TrEMBL
MGC_CLONE	MGC:105946	IMAGE-MGC_LOAD
NCBI Gene	317464	ENTREZGENE
PANTHER	MALE-SPECIFIC LETHAL 3 HOMOLOG	UniProtKB/TrEMBL
	MRG	UniProtKB/TrEMBL
Pfam	MRG	UniProtKB/TrEMBL
	MSL3_chromo-like	UniProtKB/TrEMBL
PhenoGen	Msl3	PhenoGen
PROSITE	MRG	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004016	RatGTEx
SMART	CHROMO	UniProtKB/TrEMBL
Superfamily-SCOP	Chromodomain-like	UniProtKB/TrEMBL
UniProt	A0A8I6A9H7	ENTREZGENE, UniProtKB/TrEMBL
	F7FM67	ENTREZGENE, UniProtKB/TrEMBL
	Q5RJQ2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Msl3	MSL complex subunit 3	LOC102547271	male-specific lethal 3 homolog	Data merged from RGD:7702890	737654	PROVISIONAL
2017-06-13	Msl3	MSL complex subunit 3	Msl3	male-specific lethal 3 homolog (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-12-18	LOC102547271	male-specific lethal 3 homolog			Symbol and Name status set to provisional	70820	PROVISIONAL
2010-04-23	Msl3	male-specific lethal 3 homolog (Drosophila)	Msl3l1	male-specific lethal 3-like 1 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-11-11	Msl3l1	male-specific lethal 3-like 1 (Drosophila)	Msl31	male-specific lethal-3 homolog 1 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Msl31	male-specific lethal-3 homolog 1 (Drosophila)	Msl3l1	male-specific lethal 3-like 1 (Drosophila)	Symbol and Name updated	1299863	APPROVED
2006-03-28	Msl3l1	male-specific lethal 3-like 1 (Drosophila)	LOC317464	similar to Male-specific lethal 3-like 1 (MSL3-like 1) (Male-specific lethal-3 homolog 1)	Symbol and Name updated	1299863	APPROVED
2005-09-15	LOC317464	similar to Male-specific lethal 3-like 1 (MSL3-like 1) (Male-specific lethal-3 homolog 1)			Symbol and Name status set to provisional	70820	PROVISIONAL

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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