Advanced Search (OLGA)

Gene: Rbm47 (RNA binding motif protein 47) Rattus norvegicus

Analyze

Symbol:

Rbm47

Name:

RNA binding motif protein 47

RGD ID:

1359713

Description:

Predicted to enable enzyme binding activity; enzyme-substrate adaptor activity; and mRNA 3'-UTR binding activity. Predicted to be involved in positive regulation of type I interferon-mediated signaling pathway and regulation of gene expression. Predicted to act upstream of or within cytidine to uridine editing; hematopoietic progenitor cell differentiation; and low-density lipoprotein particle clearance. Predicted to be located in cytoplasm. Predicted to be part of apolipoprotein B mRNA editing enzyme complex. Predicted to be active in nucleus. Orthologous to human RBM47 (RNA binding motif protein 47); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical RNA binding protein; hypothetical RNA binding protein RGD1359713; LOC305340; MGC94215; RGD1359713; RNA-binding motif protein 47; RNA-binding protein 47

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RBM47 (RNA binding motif protein 47)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rbm47 (RNA binding motif protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rbm47 (RNA binding motif protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RBM47 (RNA binding motif protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RBM47 (RNA binding motif protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rbm47 (RNA binding motif protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RBM47 (RNA binding motif protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RBM47 (RNA binding motif protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rbm47 (RNA binding motif protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rbm47 (RNA binding motif protein 47)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MDM4 (MDM4 regulator of p53)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Rbm47 (RNA binding motif protein 47)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RBM47 (RNA binding motif protein 47)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rbm47 (RNA binding motif protein 47)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rbm47	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	42,407,226 - 42,545,304 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	42,466,335 - 42,543,163 (+)	Ensembl				GRCr8
mRatBN7.2	14	42,053,290 - 42,191,572 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	42,154,142 - 42,189,431 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	42,514,499 - 42,543,307 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	43,814,591 - 43,843,398 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	42,295,818 - 42,323,172 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	43,701,944 - 43,839,803 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	43,810,119 - 43,837,662 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	43,490,935 - 43,627,254 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	44,815,888 - 44,846,231 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	41,314,346 - 41,342,080 (+)	NCBI		Celera
RGSC_v3.1	14	44,818,278 - 44,848,605 (+)	NCBI
Cytogenetic Map	14	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

juvenile rheumatoid arthritis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

14-Deoxy-11,12-didehydroandrographolide (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

3',5'-cyclic UMP (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

amphotericin B (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (EXP)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

DDE (ISO)

decabromodiphenyl ether (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

diazinon (EXP)

dibenz[a,h]anthracene (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

epoxiconazole (ISO)

Evodiamine (ISO)

finasteride (EXP)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glyphosate (EXP)

hydrogen peroxide (ISO)

isotretinoin (ISO)

ivermectin (ISO)

lead(0) (ISO)

lidocaine (EXP)

mercury dibromide (ISO)

methapyrilene (EXP,ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

oxaliplatin (EXP)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

p-toluidine (EXP)

panobinostat (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sulforaphane (ISO)

sulindac (EXP)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichloroethene (EXP)

triclosan (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

3'-UTR-mediated mRNA stabilization (IEA,ISO)

cytidine to uridine editing (IEA,ISO)

hematopoietic progenitor cell differentiation (ISO)

mRNA processing (IEA)

positive regulation of interleukin-10 production (IEA,ISO)

positive regulation of type I interferon-mediated signaling pathway (IEA,ISO)

regulation of alternative mRNA splicing, via spliceosome (IEA,ISO)

RNA splicing (IEA)

Cellular Component

apolipoprotein B mRNA editing enzyme complex (IEA,ISO)

cytoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

enzyme binding (IEA,ISO)

enzyme-substrate adaptor activity (IEA,ISO)

mRNA 3'-UTR binding (IEA,ISO)

mRNA binding (IBA)

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:22658674	PMID:22681889	PMID:24029230	PMID:24916387

Genomics

Comparative Map Data

Rbm47
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	42,407,226 - 42,545,304 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	42,466,335 - 42,543,163 (+)	Ensembl				GRCr8
mRatBN7.2	14	42,053,290 - 42,191,572 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	42,154,142 - 42,189,431 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	42,514,499 - 42,543,307 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	43,814,591 - 43,843,398 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	42,295,818 - 42,323,172 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	43,701,944 - 43,839,803 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	43,810,119 - 43,837,662 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	43,490,935 - 43,627,254 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	44,815,888 - 44,846,231 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	41,314,346 - 41,342,080 (+)	NCBI		Celera
RGSC_v3.1	14	44,818,278 - 44,848,605 (+)	NCBI
Cytogenetic Map	14	p11	NCBI

RBM47
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	40,423,280 - 40,630,852 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	40,423,267 - 40,630,892 (-)	Ensembl			hg38	GRCh38
GRCh37	4	40,425,297 - 40,632,611 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	40,120,029 - 40,326,640 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	4	40,866,838 - 41,073,114 (-)	NCBI		Celera
Cytogenetic Map	4	p14	NCBI
HuRef	4	39,747,457 - 39,953,324 (-)	NCBI		HuRef
CHM1_1	4	40,424,401 - 40,631,064 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	40,396,950 - 40,605,120 (-)	NCBI		T2T-CHM13v2.0

Rbm47
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	66,173,892 - 66,309,297 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	66,173,892 - 66,330,461 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	66,016,549 - 66,151,954 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	66,016,549 - 66,173,118 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	66,407,796 - 66,543,163 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	66,297,781 - 66,430,064 (-)	NCBI		MGSCv36	mm8
Celera	5	63,312,440 - 63,447,008 (-)	NCBI		Celera
Cytogenetic Map	5	C3.1	NCBI
cM Map	5	33.93	NCBI

Rbm47
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955443	6,940,523 - 7,100,130 (+)	Ensembl
ChiLan1.0	NW_004955443	6,940,523 - 7,100,130 (+)	NCBI	ChiLan1.0	ChiLan1.0

RBM47
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	40,605,279 - 40,812,111 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	40,797,090 - 41,004,002 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	34,744,484 - 34,951,402 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	40,597,366 - 40,803,668 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	40,597,366 - 40,640,599 (-)	Ensembl			panPan2	panpan1.1

RBM47
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	71,985,725 - 72,135,271 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	71,985,831 - 72,132,918 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	74,615,005 - 74,681,834 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	72,747,818 - 72,901,974 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	72,748,064 - 72,899,613 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	72,095,780 - 72,162,586 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	72,252,246 - 72,318,989 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	72,636,184 - 72,703,169 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rbm47
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	38,280,540 - 38,445,895 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	7,852,327 - 8,016,819 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	7,852,346 - 8,016,612 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RBM47
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	31,508,148 - 31,690,409 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	31,508,133 - 31,690,757 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	33,174,223 - 33,190,577 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RBM47
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	9,683,026 - 9,888,245 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	9,873,138 - 9,888,239 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	56,049,090 - 56,251,620 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rbm47
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624761	26,513,759 - 26,588,950 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624761	26,429,130 - 26,588,563 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rbm47
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	23,114,305 - 23,191,613 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rbm47
628 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	55
Count of miRNA genes:	46
Interacting mature miRNAs:	55
Transcripts:	ENSRNOT00000003327
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	38023710	83023710	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39009444	84009444	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	31238080	72970315	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30674469	85041098	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	33424686	102238540	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8621398	53621398	Rat
61420	Pia6	Pristane induced arthritis QTL 6	4.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	14	18915454	42433608	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	38023710	83023710	Rat
7387267	Uae42	Urinary albumin excretion QTL 42		0.61	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	14	22521517	67521517	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11334716	100078267	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18895192	63895192	Rat
631262	Tcas4	Tongue tumor susceptibility QTL 4	7.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	14	17906726	54251504	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	38023710	83023710	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8621398	53621398	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39411170	87582095	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	38023710	83023710	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	66	163	91	90	59	91	59	6	354	190	11	141	81	92	31	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001005882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC112624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY724525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003327 ⟹ ENSRNOP00000003327

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	42,466,335 - 42,543,163 (+)	Ensembl
mRatBN7.2 Ensembl	14	42,154,142 - 42,189,431 (+)	Ensembl
Rnor_6.0 Ensembl	14	43,810,119 - 43,837,662 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110846 ⟹ ENSRNOP00000089754

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	42,181,398 - 42,189,431 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120956 ⟹ ENSRNOP00000098539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	42,535,131 - 42,543,163 (+)	Ensembl

RefSeq Acc Id:

NM_001005882 ⟹ NP_001005882

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,515,621 - 42,543,180 (+)	NCBI
mRatBN7.2	14	42,161,887 - 42,189,448 (+)	NCBI
Rnor_6.0	14	43,810,119 - 43,837,679 (+)	NCBI
Rnor_5.0	14	43,490,935 - 43,627,254 (+)	NCBI
RGSC_v3.4	14	44,815,888 - 44,846,231 (+)	RGD
Celera	14	41,314,346 - 41,342,080 (+)	RGD

Sequence:

show sequence

TTGCCTCAAAGAATACTTCAAGAACTGAACAGAGAAATCCCAAGTGAGCTGCCTGAATCTTCGC
GAATTCTCTTGTTCTACCTTCCATAGAAAGACCAATCAAATTGCTGACTTTTGGTTTCCTCCAG
CTGTGGATGCCTTTGACATTATGACTGCAGAAGATTCCACCACAGCCATGAACAGCGATCCAAC
AGTGGGGTCCTCCACCAAGGTACCGGAGGGTGTGGCGGGCGCGCCCAATGAGGCTGCACTGTTG
GCACTGATGGAGCGCACCGGTTACAACATGGTACAGGAGAATGGGCAGCGCAAGTATGGTGGAC
CCCCGCCCGGCTGGGAGGGCCCGCATCCCCAGCGTGGCTGTGAGGTCTTCGTGGGCAAGATCCC
ACGTGATGTGTATGAAGATGAGCTGGTGCCTGTGTTTGAGACGGTAGGTCGCATCTACGAGCTG
CGCCTCATGATGGATTTCGATGGCAAGAACCGCGGCTATGCCTTCGTGATGTACTGCCACAAGC
ACGAGGCCAAGCGAGCTGTCCGTGAGCTCAACAACTATGAGATCCGCCCGGGTCGTCTGCTGGG
AGTGTGCTGCAGTGTGGACAACTGCCGCCTCTTCATCGGTGGCATCCCCAAGATGAAGAAGCGT
GGGGAGATCCTGGAGGAGATCGCCAAGGTCACCGAGGGCGTGCTCAACGTGATTGTGTATGCCA
GTGCAGCAGACAAGATGAAAAACCGAGGCTTCGCCTTTGTGGAATATGAGAGCCATCGGGCCGC
AGCAATGGCCCGTCGCAAGCTCATGCCGGGTCGTATCCAGCTGTGGGGCCACCAGATAGCCGTG
GACTGGGCCGAGCCAGAGATTGATGTAGATGAGGATGTGATGCAGACCGTGAAGATCCTCTACG
TGCGCAACCTCATGATCGAGACCACCGAGGAGACCATCAAGAGGAGCTTTGGCCAGTTCAACCC
AGGCTGTGTGGAAAGAGTCAAGAAGATCCGTGACTACGCCTTCGTGCACTTCACTAGCCGCGAG
GACGCTGTGCACGCTATGAACAACCTCAATGGCACAGAGCTGGAGGGCTCCTGCTTAGAAGTCA
CGCTGGCCAAGCCTGTGGACAAGGAGCAGTACTCTCGCTACCAGAAGGCAGCCAAGGGTGGCGG
TGGCTCAGCTGAGGCAGTGGCACAACAGCCCAGCTACGTGTACTCCTGTGACCCCTACACGCTG
GCCTATTATGGCTACCCCTACAACGCGCTCATCGGGCCCAACCGGGACTACTTCGTGAAAACAG
GCAGCATAAGAGGCCGAGGACGCGGTGCAGCTGGGAACAGAACCCCGGGGCCCAGGGGTTCCTA
CCTGGGAGGGTATTCTGCCGGCCGTGGCATATATAGCCGATATCACGAAGGCAAGGGCAAACAG
CAGGAGAAAGGATACGAGCTCGTGCCGAACCTGGAAATCTCTGCCGTCAACCCAGTGGCCATCA
AACCTGGCACAGTGGCCATCCCTGCCATTGGTGCCCAGTACTCCATGTTCCAGGCAGCCCCGGC
CCCTAAAATAATTGAAGATGGCAAGATCCACACAATGGAACACATGATCAGCCCCATTGCGGTG
CAGCCAGACCCGGCCACTGCTGCTGCCGCCGCCGCTGCCGCTGCTGCTGCTGCTGTCATTCCTG
CGGTATCCACACCGCCGCCTTTCCAGGGCCGTCCAATAACTCCTGTGTACACTGTGGCACCAAA
TGTTCCGAGAATCCCCACCGCCGGCATCTACGGGGCCAGCTATGTCCCCTTTGCTGCTCCGGCC
ACTGCCACAATCGCCACACTACAGAAGAACGCTGCAGCCGCCGTGTACGGGGGCTACGCGGGCT
ACATACCTCAGGCCTTCCCTGCTGCTCTCCAGGTGCCCATCCACGACGTCTACCAGACTTACTG
AGACCGGGGACCAGAAAGGCAAGCCACCAAACCCCGCCGAAGGAACACTCTATTATTTATGAAG
AAAGAACGTGTCGGGTTGACACACGTGTAAAACCTGCAAGTGAAGAAGAATGTTATCAAATAGC
ACACTGAAATATTTTATATCCATGAAGTTTTCACTCATGTTTTTTTGAAAATGACTTTTCAATT
TAGCAGGCCCGCGTTCATACATTTCTAAGAGACTTGCGACGCCTCATGCCTTAACATCATCTTT
TAAAGTTTGTATGCTCTACTGTGTTTGTACAGAGGTTTGGTTTTGTTTTTTAAGGATATATTTT
CAGTATGAAGGTTATTTTCTTAACTTCTGCACTCCAGAGTTTTCTATTTTGTAGAACCTTTCAA
AATATATCAGCTCTCTCTATATATATGTATATGTATATCCAAAAAAAAAAAAAAAAAAAAAAAA
A

hide sequence

RefSeq Acc Id:

XM_006250949 ⟹ XP_006251011

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,503,799 - 42,545,304 (+)	NCBI
mRatBN7.2	14	42,152,109 - 42,191,572 (+)	NCBI
Rnor_6.0	14	43,800,835 - 43,839,803 (+)	NCBI
Rnor_5.0	14	43,490,935 - 43,627,254 (+)	NCBI

Sequence:

show sequence

AACAACAAAAAAAAAACTTTATTTTATAAAATATGGATAGAAGAATAGACTGGAAACACACTTG
CCCCTCTGGTCTTTTAACAGTCTACTTAAAAAAATCTTAATTCAGTGAAGTGAAGGAAGGGAAA
ACTTGAGGTCATGGCCTTGTCGGTTGGTCGGTATTTTAGGATGCAACCCCGTGATTCAGGCTGG
CCTTGACCCGGTTATGTAGTTAAAGGCGACTTCGAACTCCTGACCACCTCCCCAGCACTGGGAT
TGCAGAGGTGCATCAGCAAACCTAGCTTCCCTACTCCTACCTTGGGGTGCGACTCAAGGCCTTG
ACTGGGCTAAGCACACCCAGTACCACTGCTCTGTGTCCCAGTCCGAAATGTTAGCCTAGGAAGA
TTGACAGGTTTTCACTTCTGTATAGGCTGTGGAGGTCACTTTCATTCTTGTTGAGAGAGTACCG
CGTGGGTGTCACATGGTGTCAAGACCTAACCCCCCCCCCCCCGCCTCAGTTTCTCCCGCCTGAT
ATCCTACTTCCAGAGGAATCTTGTAAGAGGCTCCACCTCAGGTGAGATGGACTGTGTGACTCCG
AGGTGCTTTGGATCGTCTTCCCCACATGTTGTCTTTATTACCGCAAAGCTCCTTTTATCAAACT
CTATGTCTGTGTGGCACACCACTTGTGTCAGCTTCTCACAGGTGAATCTATTTCAGCTTCAAAT
TAACCAACATGTTCATGGGGGATTTTTGCATTTTTTATCATATTTATAAATAGGGTTTTGGTAG
TGTTTGGATGGGAGAGTGCCGAACAATTCAAGTTATCTAGCCTAGATACGATAAAGGTGGGGCA
GGGGGAAGTTTACTAAAACTTAAGCATTTCCAAGAAGTCATGGTAATACCTTGTTTTTTCTTTA
AGGCTTTTGAGGCAGTCTTACTAGGTAGATTATACTGACTTGATATGTTGAACCTCCAAGTGCA
GTCCCCCAAATTCTGGGATTAGAACTGTCACCCTGTCTAATACCTCACAGTGTCTAATAAAGTC
GCACAGTGTCGCTTTTTGGTATTTGCCAGACAACTTTCTGCTCACTTAAATGTGTTTATTTAAC
CCCCACAACACCCCACGTGAAGCAGGGATTAGTACTTTTCTTATTTATATTAAGCTGTTTAAGA
GCAGTGGGCACCCATGTGATTCTCTGAGGTGAGTGGAAAGAAAACCATTGATTTCCTTCTAGTC
ACAACTAAAATATTTCCATCAAATTTCCTTTCTGTGCAATGTCAGTGTCTTCTTGGGATTTCCC
CAGTCGTCTCTGTTAGACTAGGATTCGCACTTATCTTTGTATGGCTACTAAGCTTTTCCCCTGG
ACAGCTGTGGCCCCTCCCTGCGTTCTGAGCCACGCCTTCAAACTCATTCCAGGTGTCCTTAGCG
AATGACTCCCAAGGCTAAAAGCCATTGGCCAATGCAGAGCCTGGAGCCACGTAGGGCAGAGTCA
CGCTCTTCCTGGGGTTAGGGGCAAAGGTTGCTGAAGCCAAGCCGGGCTGTGGTCGAAATTAGCC
TGTGCATCCAGAATCAAGCCTGGAAAGGGTTTGCCTCAAAGAATACTTCAAGAACTGAACAGAG
AAATCCCAAGTGAGCTGCCTGAATCTTCGCGAATTCTCTTGTTCTACCTTCCATAGAAAGACCA
ATCAAATTGCTGACTTTTGGTTTCCTCCAGCTGTGGATGCCTTTGACATTATGACTGCAGAAGA
TTCCACCACAGCCATGAACAGCGATCCAACAGTGGGGTCCTCCACCAAGGTACCGGAGGGTGTG
GCGGGCGCGCCCAATGAGGCTGCACTGTTGGCACTGATGGAGCGCACCGGTTACAACATGGTAC
AGGAGAATGGGCAGCGCAAGTATGGTGGACCCCCGCCCGGCTGGGAGGGCCCGCATCCCCAGCG
TGGCTGTGAGGTCTTCGTGGGCAAGATCCCACGTGATGTGTATGAAGATGAGCTGGTGCCTGTG
TTTGAGACGGTAGGTCGCATCTACGAGCTGCGCCTCATGATGGATTTCGATGGCAAGAACCGCG
GCTATGCCTTCGTGATGTACTGCCACAAGCACGAGGCCAAGCGAGCTGTCCGTGAGCTCAACAA
CTATGAGATCCGCCCGGGTCGTCTGCTGGGAGTGTGCTGCAGTGTGGACAACTGCCGCCTCTTC
ATCGGTGGCATCCCCAAGATGAAGAAGCGTGGGGAGATCCTGGAGGAGATCGCCAAGGTCACCG
AGGGCGTGCTCAACGTGATTGTGTATGCCAGTGCAGCAGACAAGATGAAAAACCGAGGCTTCGC
CTTTGTGGAATATGAGAGCCATCGGGCCGCAGCAATGGCCCGTCGCAAGCTCATGCCGGGTCGT
ATCCAGCTGTGGGGCCACCAGATAGCCGTGGACTGGGCCGAGCCAGAGATTGATGTAGATGAGG
ATGTGATGCAGACCGTGAAGATCCTCTACGTGCGCAACCTCATGATCGAGACCACCGAGGAGAC
CATCAAGAGGAGCTTTGGCCAGTTCAACCCAGGCTGTGTGGAAAGAGTCAAGAAGATCCGTGAC
TACGCCTTCGTGCACTTCACTAGCCGCGAGGACGCTGTGCACGCTATGAACAACCTCAATGGCA
CAGAGCTGGAGGGCTCCTGCTTAGAAGTCACGCTGGCCAAGCCTGTGGACAAGGAGCAGTACTC
TCGCTACCAGAAGGCAGCCAAGGGTGGCGGTGGCTCAGCTGAGGCAGTGGCACAACAGCCCAGC
TACGTGTACTCCTGTGACCCCTACACGCTGGCCTATTATGGCTACCCCTACAACGCGCTCATCG
GGCCCAACCGGGACTACTTCGTGAAAACAGGCAGCATAAGAGGCCGAGGACGCGGTGCAGCTGG
GAACAGAACCCCGGGGCCCAGGGGTTCCTACCTGGGAGGGTATTCTGCCGGCCGTGGCATATAT
AGCCGATATCACGAAGGCAAGGGCAAACAGCAGGAGAAAGGATACGAGCTCGTGCCGAACCTGG
AAATCTCTGCCGTCAACCCAGTGGCCATCAAACCTGGCACAGTGGCCATCCCTGCCATTGGTGC
CCAGTACTCCATGTTCCAGGCAGCCCCGGCCCCTAAAATAATTGAAGATGGCAAGATCCACACA
ATGGAACACATGATCAGCCCCATTGCGGTGCAGCCAGACCCGGCCACTGCTGCTGCCGCCGCCG
CTGCCGCTGCTGCTGCTGCTGTCATTCCTGCGGTATCCACACCGCCGCCTTTCCAGGGCCGTCC
AATAACTCCTGTGTACACTGTGGCACCAAATGTTCCGAGAATCCCCACCGCCGGCATCTACGGG
GCCAGCTATGTCCCCTTTGCTGCTCCGGCCACTGCCACAATCGCCACACTACAGAAGAACGCTG
CAGCCGCCGTGTACGGGGGCTACGCGGGCTACATACCTCAGGCCTTCCCTGCTGCTCTCCAGGT
GCCCATCCACGACGTCTACCAGACTTACTGAGACCGGGGACCAGAAAGGCAAGCCACCAAACCC
CGCCGAAGGAACACTCTATTATTTATGAAGAAAGAACGTGTCGGGTTGACACACGTGTAAAACC
TGCAAGTGAAGAAGAATGTTATCAAATAGCACACTGAAATATTTTATATCCATGAAGTTTTCAC
TCATGTTTTTTTGAAAATGACTTTTCAATTTAGCAGGCCCGCGTTCATACATTTCTAAGAGACT
TGCGACGCCTCATGCCTTAACATCATCTTTTAAAGTTTGTATGCTCTACTGTGTTTGTACAGAG
GTTTGGTTTTGTTTTTTAAGGATATATTTTCAGTATGAAGGTTATTTTCTTAACTTCTGCACTC
CAGAGTTTTCTATTTTGTAGAACCTTTCAAAATATATCAGCTCTCTCTATATATATGTATATGT
ATATCCAAAAAAAAAAAAAAAAAGAGCACGCCCGGGCATCTAGGGAACTATTTTGAAAACTATA
TTCAATATTTAAAGACACAAACTGTAGTGTTCTGAAATGCTACGCAAAACATTTTATTTTTAAG
GTGATGCTGGAAAGTGCAATTTTAAAATGAGGAAAAAAAGGTCTCTACTGTGTTTCTACTGGCA
TTAAGGGTTGACGATATTGCCATATATTCTTGTCATGTTTTCTGGGTTTATGGGGGTTTGGGTT
TGGTTTGTTTGTTTGTTTGTTTGTTTTAATAAGTCTGTTCTTAAGCCAACATGGAAAAGACTCC
CCACACCCAGAGTCCCAACACTGGAAAGCTCTGACCTGCCCTCAGTACCCTGGGCTCACCCTGT
GTCTCTACTGTTATCTGCCCCGCCCCACCCTCAAGGAGGGATTCTGCCTCCTTCCCTGGCTCCC
GGGCAGCTCTGAGGTTTGGCATATCTAAGAAAAGTGGATAATCGAATGGAGAGGACTACTGATG
CCTTTTATGCTTCTTCCTGGGATTGTGTTGGGGTCTTTTTATATTTAATTTTGGATTGTCTGGG
GATGTATTTTCTTCTCCATGTGTTTTCAGTAGCAGAATGCACCCGAGGGCAAGATTTTACCTCG
TTTGCCTAAGGCATCTTTGCATAGCTATTTGTTCAGTACGGAACTTCAACTTTCTAATCCTTTG
TTTTTTTGGCGTGTTTTTTTTTTTTTTAAGTCTGAGTTTTTAGAGACCAAGAATGTATGTGACT
ATAGACAAGACCTTCAAGACTTGTCAACAGGAAGTTTAGCTTCTCGCTGCCTTTCTGCGTTTCC
TACAGGATGCCTGTTGTCATCAGGGATGTTAGAAGCACTGTGTGTGTTTAACAGGGTTTCTCTC
AGCCGCCCTGCGTTTGGTAGGCGAACAGGGGGCATACCCATCCAAGAGGAGGACCTGTAGGTTA
AGGGTAGTTTGTAAATAACTTCTGATGCTTGCTCATACACACCTTCTGTGTTGCCAAAGCTCGT
GGCTTGTAGTGTAATGCGAAACGCAGCCATTTTATTTCAATGTTATTAAAAGTGTTTGCTTTTT
TGTGGGGGGGGGAGTAAATGCACAGAGGCAGGGTTAGGGTTTTGTGCCTGTTTTAAGGCTTTTA
TTTGGCAGTGAATGTAAAATACAGTGAAATGATAATATTGTCATCTCTTTTATGAATTACATCT
TTTTAAAAGGCTTGGTCCAGGGTGTGAAGTGAGCGATAAGGTAACAGAGGCATGGTTGTATTTT
ATGGCATAACAGAGTCCATCAGATTTTTCTTCCCTCCAGAGTTTTGCTAATAGGCTTAACTCTT
ATTTCTGGATTAATAGTAGGATCATGCCCTTAGCAAATAATTTTCTGTTTTTAAATTAAGAGAT
TCCCAAATGTCTTTTCCCCCCCTTATCTTGATGGGATGGATTTTATATATAAGAAATATTTATT
TAGCTATTCTGTAAAATTATCTAGTGCCTGCTAAGGCCTTTGAGCATCCCTCCATCCTGTTGCG
TGGCATAAAGCAGCAGCTGTACGGTGTTCTGGGGGCTCACTCAGAAGCTGCACCCACTCGGGCC
CGTGGGGATGAGGGACCTTATCAAAGGTATCAGGTTCTCATCCCTTGACTTGTGTGAGGAAAAA
AGTGCTTTCCTTCCTGCCACCACGGACTGACATGGAAGTCTTCAGATGGAACGCTGACCCCATG
TTCTTACTGTATTTTTCAAGTGCCTGGAAAAAAATATTTTCAAAAACAATACTAGTAATAATAA
AAGGAAAAAATATGCACTAACTTAACATGGCAACTACCTTAACAACAGGCATTGGTGGCAGCCA
GTTAAGCACCAGTGGCCCTGCTGTCTGTGATCTTACCTGTTCCTCTTGTTTCTCAACCATTTCA
CACGTACACTACTGAGGTAAGTTTATAACTTGAAATGTGAACTTTTTTTTTTTTTAGGAATAAG
AACAAACTAATATAAATGTTTTTAAACGTTTTAGAGTTTGGGTTTTAGACATGCTACTAGTTTA
GTTTTTAGCTTCATATTTGAAAAGCTTTTTAGATCTCGCTTCATTTACATACAGTGCATTCTTA
AAATGTATGTGGTAAATAAAGCTTTCTTGAAAGCA

hide sequence

RefSeq Acc Id:

XM_006250951 ⟹ XP_006251013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,407,226 - 42,545,304 (+)	NCBI
mRatBN7.2	14	42,053,290 - 42,191,572 (+)	NCBI
Rnor_6.0	14	43,701,944 - 43,839,803 (+)	NCBI
Rnor_5.0	14	43,490,935 - 43,627,254 (+)	NCBI

Sequence:

show sequence

TTCGATTCCTGTTGGCTGATTCGGCGCCTGCAAACAGGCTTAGTGCTCCATTGAAATGCGGGAG
GCTCCTTAATTCTTGTATAAACAGAAACCAGCTGTAACACTAGGTCAGAGCGCTTTAAGAATGA
GCCACTTTGAACAAGCGGCGCCCAGGCCCCAGGCCCTGCTGTGAAGGCCCCGGCAAAGGTCAGA
GCTCGGCCCCGTGACGTGCCTGCCTGTGTTCTCCGAGCCATGCTCAGCCTCAGCTCAGGTAACA
AACAAGTTAGAAGGACAGCCTGCGCCCTGCCACCCAGCCTCACTAGCAGCTCCCAGCTCACTGA
AGTTTGGGTTTGCCTCAAAGAATACTTCAAGAACTGAACAGAGAAATCCCAAGTGAGCTGCCTG
AATCTTCGCGAATTCTCTTGTTCTACCTTCCATAGAAAGACCAATCAAATTGCTGACTTTTGGT
TTCCTCCAGCTGTGGATGCCTTTGACATTATGACTGCAGAAGATTCCACCACAGCCATGAACAG
CGATCCAACAGTGGGGTCCTCCACCAAGGTACCGGAGGGTGTGGCGGGCGCGCCCAATGAGGCT
GCACTGTTGGCACTGATGGAGCGCACCGGTTACAACATGGTACAGGAGAATGGGCAGCGCAAGT
ATGGTGGACCCCCGCCCGGCTGGGAGGGCCCGCATCCCCAGCGTGGCTGTGAGGTCTTCGTGGG
CAAGATCCCACGTGATGTGTATGAAGATGAGCTGGTGCCTGTGTTTGAGACGGTAGGTCGCATC
TACGAGCTGCGCCTCATGATGGATTTCGATGGCAAGAACCGCGGCTATGCCTTCGTGATGTACT
GCCACAAGCACGAGGCCAAGCGAGCTGTCCGTGAGCTCAACAACTATGAGATCCGCCCGGGTCG
TCTGCTGGGAGTGTGCTGCAGTGTGGACAACTGCCGCCTCTTCATCGGTGGCATCCCCAAGATG
AAGAAGCGTGGGGAGATCCTGGAGGAGATCGCCAAGGTCACCGAGGGCGTGCTCAACGTGATTG
TGTATGCCAGTGCAGCAGACAAGATGAAAAACCGAGGCTTCGCCTTTGTGGAATATGAGAGCCA
TCGGGCCGCAGCAATGGCCCGTCGCAAGCTCATGCCGGGTCGTATCCAGCTGTGGGGCCACCAG
ATAGCCGTGGACTGGGCCGAGCCAGAGATTGATGTAGATGAGGATGTGATGCAGACCGTGAAGA
TCCTCTACGTGCGCAACCTCATGATCGAGACCACCGAGGAGACCATCAAGAGGAGCTTTGGCCA
GTTCAACCCAGGCTGTGTGGAAAGAGTCAAGAAGATCCGTGACTACGCCTTCGTGCACTTCACT
AGCCGCGAGGACGCTGTGCACGCTATGAACAACCTCAATGGCACAGAGCTGGAGGGCTCCTGCT
TAGAAGTCACGCTGGCCAAGCCTGTGGACAAGGAGCAGTACTCTCGCTACCAGAAGGCAGCCAA
GGGTGGCGGTGGCTCAGCTGAGGCAGTGGCACAACAGCCCAGCTACGTGTACTCCTGTGACCCC
TACACGCTGGCCTATTATGGCTACCCCTACAACGCGCTCATCGGGCCCAACCGGGACTACTTCG
TGAAAACAGGCAGCATAAGAGGCCGAGGACGCGGTGCAGCTGGGAACAGAACCCCGGGGCCCAG
GGGTTCCTACCTGGGAGGGTATTCTGCCGGCCGTGGCATATATAGCCGATATCACGAAGGCAAG
GGCAAACAGCAGGAGAAAGGATACGAGCTCGTGCCGAACCTGGAAATCTCTGCCGTCAACCCAG
TGGCCATCAAACCTGGCACAGTGGCCATCCCTGCCATTGGTGCCCAGTACTCCATGTTCCAGGC
AGCCCCGGCCCCTAAAATAATTGAAGATGGCAAGATCCACACAATGGAACACATGATCAGCCCC
ATTGCGGTGCAGCCAGACCCGGCCACTGCTGCTGCCGCCGCCGCTGCCGCTGCTGCTGCTGCTG
TCATTCCTGCGGTATCCACACCGCCGCCTTTCCAGGGCCGTCCAATAACTCCTGTGTACACTGT
GGCACCAAATGTTCCGAGAATCCCCACCGCCGGCATCTACGGGGCCAGCTATGTCCCCTTTGCT
GCTCCGGCCACTGCCACAATCGCCACACTACAGAAGAACGCTGCAGCCGCCGTGTACGGGGGCT
ACGCGGGCTACATACCTCAGGCCTTCCCTGCTGCTCTCCAGGTGCCCATCCACGACGTCTACCA
GACTTACTGAGACCGGGGACCAGAAAGGCAAGCCACCAAACCCCGCCGAAGGAACACTCTATTA
TTTATGAAGAAAGAACGTGTCGGGTTGACACACGTGTAAAACCTGCAAGTGAAGAAGAATGTTA
TCAAATAGCACACTGAAATATTTTATATCCATGAAGTTTTCACTCATGTTTTTTTGAAAATGAC
TTTTCAATTTAGCAGGCCCGCGTTCATACATTTCTAAGAGACTTGCGACGCCTCATGCCTTAAC
ATCATCTTTTAAAGTTTGTATGCTCTACTGTGTTTGTACAGAGGTTTGGTTTTGTTTTTTAAGG
ATATATTTTCAGTATGAAGGTTATTTTCTTAACTTCTGCACTCCAGAGTTTTCTATTTTGTAGA
ACCTTTCAAAATATATCAGCTCTCTCTATATATATGTATATGTATATCCAAAAAAAAAAAAAAA
AAGAGCACGCCCGGGCATCTAGGGAACTATTTTGAAAACTATATTCAATATTTAAAGACACAAA
CTGTAGTGTTCTGAAATGCTACGCAAAACATTTTATTTTTAAGGTGATGCTGGAAAGTGCAATT
TTAAAATGAGGAAAAAAAGGTCTCTACTGTGTTTCTACTGGCATTAAGGGTTGACGATATTGCC
ATATATTCTTGTCATGTTTTCTGGGTTTATGGGGGTTTGGGTTTGGTTTGTTTGTTTGTTTGTT
TGTTTTAATAAGTCTGTTCTTAAGCCAACATGGAAAAGACTCCCCACACCCAGAGTCCCAACAC
TGGAAAGCTCTGACCTGCCCTCAGTACCCTGGGCTCACCCTGTGTCTCTACTGTTATCTGCCCC
GCCCCACCCTCAAGGAGGGATTCTGCCTCCTTCCCTGGCTCCCGGGCAGCTCTGAGGTTTGGCA
TATCTAAGAAAAGTGGATAATCGAATGGAGAGGACTACTGATGCCTTTTATGCTTCTTCCTGGG
ATTGTGTTGGGGTCTTTTTATATTTAATTTTGGATTGTCTGGGGATGTATTTTCTTCTCCATGT
GTTTTCAGTAGCAGAATGCACCCGAGGGCAAGATTTTACCTCGTTTGCCTAAGGCATCTTTGCA
TAGCTATTTGTTCAGTACGGAACTTCAACTTTCTAATCCTTTGTTTTTTTGGCGTGTTTTTTTT
TTTTTTAAGTCTGAGTTTTTAGAGACCAAGAATGTATGTGACTATAGACAAGACCTTCAAGACT
TGTCAACAGGAAGTTTAGCTTCTCGCTGCCTTTCTGCGTTTCCTACAGGATGCCTGTTGTCATC
AGGGATGTTAGAAGCACTGTGTGTGTTTAACAGGGTTTCTCTCAGCCGCCCTGCGTTTGGTAGG
CGAACAGGGGGCATACCCATCCAAGAGGAGGACCTGTAGGTTAAGGGTAGTTTGTAAATAACTT
CTGATGCTTGCTCATACACACCTTCTGTGTTGCCAAAGCTCGTGGCTTGTAGTGTAATGCGAAA
CGCAGCCATTTTATTTCAATGTTATTAAAAGTGTTTGCTTTTTTGTGGGGGGGGGAGTAAATGC
ACAGAGGCAGGGTTAGGGTTTTGTGCCTGTTTTAAGGCTTTTATTTGGCAGTGAATGTAAAATA
CAGTGAAATGATAATATTGTCATCTCTTTTATGAATTACATCTTTTTAAAAGGCTTGGTCCAGG
GTGTGAAGTGAGCGATAAGGTAACAGAGGCATGGTTGTATTTTATGGCATAACAGAGTCCATCA
GATTTTTCTTCCCTCCAGAGTTTTGCTAATAGGCTTAACTCTTATTTCTGGATTAATAGTAGGA
TCATGCCCTTAGCAAATAATTTTCTGTTTTTAAATTAAGAGATTCCCAAATGTCTTTTCCCCCC
CTTATCTTGATGGGATGGATTTTATATATAAGAAATATTTATTTAGCTATTCTGTAAAATTATC
TAGTGCCTGCTAAGGCCTTTGAGCATCCCTCCATCCTGTTGCGTGGCATAAAGCAGCAGCTGTA
CGGTGTTCTGGGGGCTCACTCAGAAGCTGCACCCACTCGGGCCCGTGGGGATGAGGGACCTTAT
CAAAGGTATCAGGTTCTCATCCCTTGACTTGTGTGAGGAAAAAAGTGCTTTCCTTCCTGCCACC
ACGGACTGACATGGAAGTCTTCAGATGGAACGCTGACCCCATGTTCTTACTGTATTTTTCAAGT
GCCTGGAAAAAAATATTTTCAAAAACAATACTAGTAATAATAAAAGGAAAAAATATGCACTAAC
TTAACATGGCAACTACCTTAACAACAGGCATTGGTGGCAGCCAGTTAAGCACCAGTGGCCCTGC
TGTCTGTGATCTTACCTGTTCCTCTTGTTTCTCAACCATTTCACACGTACACTACTGAGGTAAG
TTTATAACTTGAAATGTGAACTTTTTTTTTTTTTAGGAATAAGAACAAACTAATATAAATGTTT
TTAAACGTTTTAGAGTTTGGGTTTTAGACATGCTACTAGTTTAGTTTTTAGCTTCATATTTGAA
AAGCTTTTTAGATCTCGCTTCATTTACATACAGTGCATTCTTAAAATGTATGTGGTAAATAAAG
CTTTCTTGAAAGCA

hide sequence

RefSeq Acc Id:

XM_063273126 ⟹ XP_063129196

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,408,202 - 42,545,304 (+)	NCBI

RefSeq Acc Id:

XM_063273127 ⟹ XP_063129197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,407,702 - 42,545,304 (+)	NCBI

RefSeq Acc Id:

XM_063273128 ⟹ XP_063129198

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,407,705 - 42,545,304 (+)	NCBI

RefSeq Acc Id:

XM_063273129 ⟹ XP_063129199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,477,506 - 42,545,304 (+)	NCBI

RefSeq Acc Id:

XM_063273130 ⟹ XP_063129200

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	42,482,801 - 42,545,304 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001005882	(Get FASTA)	NCBI Sequence Viewer
	NP_001423981	(Get FASTA)	NCBI Sequence Viewer
	XP_006251011	(Get FASTA)	NCBI Sequence Viewer
	XP_006251013	(Get FASTA)	NCBI Sequence Viewer
	XP_063129196	(Get FASTA)	NCBI Sequence Viewer
	XP_063129197	(Get FASTA)	NCBI Sequence Viewer
	XP_063129198	(Get FASTA)	NCBI Sequence Viewer
	XP_063129199	(Get FASTA)	NCBI Sequence Viewer
	XP_063129200	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81995	(Get FASTA)	NCBI Sequence Viewer
	EDL90047	(Get FASTA)	NCBI Sequence Viewer
	EDL90048	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003327
	ENSRNOP00000003327.5
GenBank Protein	Q66H68	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001005882 ⟸ NM_001005882

- UniProtKB:

Q66H68 (UniProtKB/Swiss-Prot), A6JDC5 (UniProtKB/TrEMBL), A0A8I6AD79 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTAEDSTTAMNSDPTVGSSTKVPEGVAGAPNEAALLALMERTGYNMVQENGQRKYGGPPPGWEG
PHPQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAV
RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAADKMK
NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIE
TTEETIKRSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVD
KEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDPYTLAYYGYPYNALIGPNRDYFVKTGSIRGRG
RGAAGNRTPGPRGSYLGGYSAGRGIYSRYHEGKGKQQEKGYELVPNLEISAVNPVAIKPGTVAI
PAIGAQYSMFQAAPAPKIIEDGKIHTMEHMISPIAVQPDPATAAAAAAAAAAAAVIPAVSTPPP
FQGRPITPVYTVAPNVPRIPTAGIYGASYVPFAAPATATIATLQKNAAAAVYGGYAGYIPQAFP
AALQVPIHDVYQTY

hide sequence

RefSeq Acc Id:

XP_006251013 ⟸ XM_006250951

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTAEDSTTAMNSDPTVGSSTKVPEGVAGAPNEAALLALMERTGYNMVQENGQRKYGGPPPGWEG
PHPQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAV
RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAADKMK
NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIE
TTEETIKRSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVD
KEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDPYTLAYYGYPYNALIGPNRDYFVKTGSIRGRG
RGAAGNRTPGPRGSYLGGYSAGRGIYSRYHEGKGKQQEKGYELVPNLEISAVNPVAIKPGTVAI
PAIGAQYSMFQAAPAPKIIEDGKIHTMEHMISPIAVQPDPATAAAAAAAAAAAAVIPAVSTPPP
FQGRPITPVYTVAPNVPRIPTAGIYGASYVPFAAPATATIATLQKNAAAAVYGGYAGYIPQAFP
AALQVPIHDVYQTY

hide sequence

RefSeq Acc Id:	XP_006251011 ⟸ XM_006250949
- Peptide Label:	isoform X1
- UniProtKB:	Q66H68 (UniProtKB/Swiss-Prot), A6JDC5 (UniProtKB/TrEMBL), A0A8I6AD79 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTAEDSTTAMNSDPTVGSSTKVPEGVAGAPNEAALLALMERTGYNMVQENGQRKYGGPPPGWEG PHPQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAV RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAADKMK NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIE TTEETIKRSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVD KEQYSRYQKAAKGGGGSAEAVAQQPSYVYSCDPYTLAYYGYPYNALIGPNRDYFVKTGSIRGRG RGAAGNRTPGPRGSYLGGYSAGRGIYSRYHEGKGKQQEKGYELVPNLEISAVNPVAIKPGTVAI PAIGAQYSMFQAAPAPKIIEDGKIHTMEHMISPIAVQPDPATAAAAAAAAAAAAVIPAVSTPPP FQGRPITPVYTVAPNVPRIPTAGIYGASYVPFAAPATATIATLQKNAAAAVYGGYAGYIPQAFP AALQVPIHDVYQTY hide sequence

Ensembl Acc Id:

ENSRNOP00000003327 ⟸ ENSRNOT00000003327

Ensembl Acc Id:

ENSRNOP00000089754 ⟸ ENSRNOT00000110846

RefSeq Acc Id:	XP_063129197 ⟸ XM_063273127
- Peptide Label:	isoform X1
- UniProtKB:	Q66H68 (UniProtKB/Swiss-Prot), A6JDC5 (UniProtKB/TrEMBL), A0A8I6AD79 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129198 ⟸ XM_063273128
- Peptide Label:	isoform X1
- UniProtKB:	Q66H68 (UniProtKB/Swiss-Prot), A6JDC5 (UniProtKB/TrEMBL), A0A8I6AD79 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129196 ⟸ XM_063273126
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063129199 ⟸ XM_063273129
- Peptide Label:	isoform X1
- UniProtKB:	Q66H68 (UniProtKB/Swiss-Prot), A6JDC5 (UniProtKB/TrEMBL), A0A8I6AD79 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129200 ⟸ XM_063273130
- Peptide Label:	isoform X1
- UniProtKB:	Q66H68 (UniProtKB/Swiss-Prot), A6JDC5 (UniProtKB/TrEMBL), A0A8I6AD79 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000098539 ⟸ ENSRNOT00000120956

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66H68-F1-model_v2	AlphaFold	Q66H68	1-590	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359713	AgrOrtholog
BioCyc Gene	G2FUF-15758	BioCyc
Ensembl Genes	ENSRNOG00000002408	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000003327	ENTREZGENE
	ENSRNOT00000003327.7	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.70.330	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7130530	IMAGE-MGC_LOAD
InterPro	HnRNP_R/Q_splicing_fac	UniProtKB/Swiss-Prot
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RBM47_RRM1	UniProtKB/Swiss-Prot
	RBM47_RRM2	UniProtKB/Swiss-Prot
	RBM47_RRM3	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
KEGG Report	rno:305340	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94215	IMAGE-MGC_LOAD
NCBI Gene	305340	ENTREZGENE
PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	UniProtKB/Swiss-Prot
Pfam	RRM_1	UniProtKB/Swiss-Prot
PhenoGen	Rbm47	PhenoGen
PROSITE	RRM	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000002408	RatGTEx
SMART	RRM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF54928	UniProtKB/Swiss-Prot
UniProt	A0A8I6AD79	ENTREZGENE
	A0ABK0LC87_RAT	UniProtKB/TrEMBL
	A6JDC5	ENTREZGENE, UniProtKB/TrEMBL
	Q66H68	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-23	Rbm47	RNA binding motif protein 47	RGD1359713	hypothetical RNA binding protein RGD1359713	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	RGD1359713	hypothetical RNA binding protein RGD1359713			Symbol and Name updated	1299863	APPROVED
2005-07-29	LOC305340	hypothetical RNA binding protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - CTD