Zfp799 (zinc finger protein 799) - Rat Genome Database

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Gene: Zfp799 (zinc finger protein 799) Rattus norvegicus
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Symbol: Zfp799
Name: zinc finger protein 799
RGD ID: 1359692
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to several human genes including ZNF433 (zinc finger protein 433); ZNF799 (zinc finger protein 799); and ZNF823 (zinc finger protein 823); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC72997; similar to 6030490I01Rik; Zpf799
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8712,548,586 - 12,561,317 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl712,550,400 - 12,561,507 (-)EnsemblGRCr8
mRatBN7.2711,894,224 - 11,910,809 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl711,898,149 - 11,910,798 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx714,700,727 - 14,713,388 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0716,578,152 - 16,590,813 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0714,458,068 - 14,470,586 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0715,066,960 - 15,079,624 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl715,069,254 - 15,073,052 (-)Ensemblrn6Rnor6.0
Rnor_5.0715,224,533 - 15,237,189 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4713,475,889 - 13,488,523 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera79,992,984 - 10,005,616 (-)NCBICelera
RGSC_v3.1713,478,184 - 13,488,523 (-)NCBI
Cytogenetic Map7q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Zfp799
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8712,548,586 - 12,561,317 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl712,550,400 - 12,561,507 (-)EnsemblGRCr8
mRatBN7.2711,894,224 - 11,910,809 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl711,898,149 - 11,910,798 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx714,700,727 - 14,713,388 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0716,578,152 - 16,590,813 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0714,458,068 - 14,470,586 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0715,066,960 - 15,079,624 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl715,069,254 - 15,073,052 (-)Ensemblrn6Rnor6.0
Rnor_5.0715,224,533 - 15,237,189 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4713,475,889 - 13,488,523 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera79,992,984 - 10,005,616 (-)NCBICelera
RGSC_v3.1713,478,184 - 13,488,523 (-)NCBI
Cytogenetic Map7q11NCBI
ZNF799
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381912,390,016 - 12,415,084 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1912,390,016 - 12,401,271 (-)Ensemblhg38GRCh38
GRCh371912,500,830 - 12,512,085 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,361,830 - 12,373,034 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1912,394,655 - 12,405,914 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1912,075,109 - 12,086,368 (-)NCBIHuRef
CHM1_11912,501,106 - 12,512,365 (-)NCBICHM1_1
T2T-CHM13v2.01912,518,440 - 12,543,482 (-)NCBIT2T-CHM13v2.0
Zfp799
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391733,031,125 - 33,049,235 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1733,034,423 - 33,049,235 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381732,815,449 - 32,830,261 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1732,815,449 - 32,830,261 (-)Ensemblmm10GRCm38
MGSCv371732,954,149 - 32,967,193 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361732,554,567 - 32,567,996 (-)NCBIMGSCv36mm8
Celera1733,730,049 - 33,743,082 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI

Variants

.
Variants in Zfp799
139 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:618
Count of miRNA genes:279
Interacting mature miRNAs:335
Transcripts:ENSRNOT00000037708
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat

Markers in Region
RH144103  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8712,549,378 - 12,549,542 (+)Marker Load Pipeline
mRatBN7.2711,898,863 - 11,899,027 (+)MAPPERmRatBN7.2
Rnor_6.0715,067,675 - 15,067,838NCBIRnor6.0
Rnor_5.0715,225,248 - 15,225,411UniSTSRnor5.0
Celera79,993,699 - 9,993,868UniSTS
RH 3.4 Map763.2UniSTS
Cytogenetic Map7q11UniSTS
AI137360  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2711,898,287 - 11,898,395 (+)MAPPERmRatBN7.2
Rnor_6.0715,067,099 - 15,067,206NCBIRnor6.0
Rnor_5.0715,224,672 - 15,224,779UniSTSRnor5.0
RGSC_v3.4713,476,028 - 13,476,135UniSTSRGSC3.4
Celera79,993,123 - 9,993,230UniSTS
RH 3.4 Map771.0UniSTS
Cytogenetic Map7q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000037708   ⟹   ENSRNOP00000038590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl711,898,149 - 11,904,565 (-)Ensembl
Rnor_6.0 Ensembl715,069,470 - 15,073,052 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087294   ⟹   ENSRNOP00000071785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl712,550,400 - 12,561,316 (-)Ensembl
mRatBN7.2 Ensembl711,898,149 - 11,910,798 (-)Ensembl
Rnor_6.0 Ensembl715,069,254 - 15,072,703 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102286   ⟹   ENSRNOP00000096364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl712,552,930 - 12,561,507 (-)Ensembl
mRatBN7.2 Ensembl711,902,415 - 11,910,798 (-)Ensembl
RefSeq Acc Id: NM_001009537   ⟹   NP_001009537
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,548,664 - 12,561,296 (-)NCBI
mRatBN7.2711,898,149 - 11,910,781 (-)NCBI
Rnor_6.0715,066,960 - 15,079,592 (-)NCBI
Rnor_5.0715,224,533 - 15,237,189 (-)NCBI
RGSC_v3.4713,475,889 - 13,488,523 (-)RGD
Celera79,992,984 - 10,005,616 (-)RGD
Sequence:
RefSeq Acc Id: XM_006241084   ⟹   XP_006241146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,548,586 - 12,561,317 (-)NCBI
mRatBN7.2711,894,224 - 11,910,809 (-)NCBI
Rnor_6.0715,068,537 - 15,079,624 (-)NCBI
Rnor_5.0715,224,533 - 15,237,189 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079726   ⟹   XP_038935654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,548,586 - 12,561,317 (-)NCBI
mRatBN7.2711,894,224 - 11,910,809 (-)NCBI
RefSeq Acc Id: XM_039079727   ⟹   XP_038935655
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8712,548,586 - 12,561,317 (-)NCBI
mRatBN7.2711,894,224 - 11,910,809 (-)NCBI
RefSeq Acc Id: NP_001009537   ⟸   NM_001009537
- UniProtKB: A0A0G2K1C4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241146   ⟸   XM_006241084
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000071785   ⟸   ENSRNOT00000087294
Ensembl Acc Id: ENSRNOP00000038590   ⟸   ENSRNOT00000037708
RefSeq Acc Id: XP_038935655   ⟸   XM_039079727
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038935654   ⟸   XM_039079726
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000096364   ⟸   ENSRNOT00000102286
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1MA26-F1-model_v2 AlphaFold F1MA26 1-648 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359692 AgrOrtholog
BioCyc Gene G2FUF-34803 BioCyc
Ensembl Genes ENSRNOG00000032552 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000087294 ENTREZGENE
  ENSRNOT00000087294.3 UniProtKB/TrEMBL
  ENSRNOT00000102286.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6888485 IMAGE-MGC_LOAD
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  Krueppel_C2H2_ZnF UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
MGC_CLONE MGC:72997 IMAGE-MGC_LOAD
NCBI Gene 494339 ENTREZGENE
PANTHER ENDOTHELIAL ZINC FINGER PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA UniProtKB/TrEMBL
  GASTRULA ZINC FINGER PROTEIN XLCGF57.1-LIKE-RELATED UniProtKB/TrEMBL
  KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp799 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032552 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Krueppel-associated_box UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A0G2K1C4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AT72_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-20 Zfp799  zinc finger protein 799  Zpf799  zinc finger protein 799  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-30 Zpf799  zinc finger protein 799  MGC72997  similar to 6030490I01Rik  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 MGC72997  similar to 6030490I01Rik      Symbol and Name status set to provisional 70820 PROVISIONAL