Ndufs1 (NADH:ubiquinone oxidoreductase core subunit S1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ndufs1 (NADH:ubiquinone oxidoreductase core subunit S1) Rattus norvegicus
Analyze
Symbol: Ndufs1
Name: NADH:ubiquinone oxidoreductase core subunit S1
RGD ID: 1359670
Description: Predicted to enable electron transfer activity. Predicted to contribute to NADH dehydrogenase (ubiquinone) activity. Predicted to be involved in mitochondrial electron transport, NADH to ubiquinone and mitochondrial respiratory chain complex I assembly. Predicted to be located in mitochondrial inner membrane and mitochondrial intermembrane space. Predicted to be part of respiratory chain complex I. Human ortholog(s) of this gene implicated in inherited metabolic disorder; mitochondrial complex I deficiency; and nuclear type mitochondrial complex I deficiency 5. Orthologous to human NDUFS1 (NADH:ubiquinone oxidoreductase core subunit S1); PARTICIPATES IN Alzheimer's disease pathway; Huntington's disease pathway; oxidative phosphorylation pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dibromophenyl 2,4,5-tribromophenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: MGC93795; NADH dehydrogenase (ubiquinone) Fe-S protein 1; NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa; NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8972,040,286 - 72,073,605 (-)NCBIGRCr8
mRatBN7.2964,546,430 - 64,579,751 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl964,546,225 - 64,579,893 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx973,049,877 - 73,083,200 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0978,170,168 - 78,204,120 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0976,476,771 - 76,510,751 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0969,919,863 - 69,953,182 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl969,919,867 - 69,953,182 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0969,728,932 - 69,762,079 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4961,798,141 - 61,831,964 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1961,945,124 - 61,978,946 (-)NCBI
Celera961,964,379 - 61,997,783 (-)NCBICelera
Cytogenetic Map9q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufs1Ratcystic fibrosis  ISONdufs1 (Mus musculus)6484688protein:increased oxidation:colonic epithelium and mitochondrion (mouse)RGD 
Ndufs1Ratinherited metabolic disorder  ISONDUFS1 (Homo sapiens)1556706mitochondrial complex I deficiency more ...RGD 
Ndufs1Ratmitochondrial complex I deficiency  ISONDUFS1 (Homo sapiens)1556706DNA:point mutations and deletions:cds:multiple (human)RGD 
Ndufs1RatMyocardial Reperfusion Injury treatmentIDA 13801200 RGD 
Ndufs1RatParkinson's disease onsetISONdufs1 (Mus musculus)6484690protein:increased oxidation:brain and mitochondrion (mouse)RGD 
1 to 11 of 11 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufs1Ratgenetic disease  ISONDUFS1 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:17576681 more ...
Ndufs1RatLeigh disease  ISONDUFS1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 and PMID:28492532
Ndufs1Ratmegacolon  ISONDUFS1 (Homo sapiens)8554872ClinVar Annotator: match by term: MegacolonClinVarPMID:21681106
Ndufs1RatMELAS syndrome  ISONDUFS1 (Homo sapiens)8554872ClinVar Annotator: match by term: MELAS syndromeClinVarPMID:22499341
Ndufs1Ratmitochondrial complex I deficiency  ISONDUFS1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11349233 more ...
Ndufs1Ratmitochondrial metabolism disease  ISONDUFS1 (Homo sapiens)8554872ClinVar Annotator: match by term: Mitochondrial diseaseClinVarPMID:25741868
Ndufs1RatNeurodevelopmental Disorders  ISONDUFS1 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
Ndufs1Ratnuclear type mitochondrial complex I deficiency 1  ISONDUFS1 (Homo sapiens)8554872ClinVar Annotator: match by term: Mitochondrial complex I deficiency and nuclear type 1ClinVarPMID:11349233 more ...
Ndufs1Ratnuclear type mitochondrial complex I deficiency 5  ISONDUFS1 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:11349233 more ...
Ndufs1Ratprimary pulmonary hypertension  ISONDUFS1 (Homo sapiens)8554872ClinVar Annotator: match by term: Primary pulmonary hypertensionClinVarPMID:28492532 and PMID:31727138
Ndufs1RatSubacute Necrotizing Encephalopathy of Leigh, Infantile  ISONDUFS1 (Homo sapiens)8554872ClinVar Annotator: match by term: Leigh's necrotizing encephalopathyClinVarPMID:25741868 and PMID:28492532
1 to 11 of 11 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufs1RatDisease Progression  ISONDUFS1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21364753
Ndufs1Rathypertrophic cardiomyopathy  ISONDUFS1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:9527842
Ndufs1RatStomach Neoplasms  ISONDUFS1 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21364753
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufs1Ratnuclear type mitochondrial complex I deficiency 5  ISONDUFS1 (Homo sapiens)7240710 OMIM 

1 to 20 of 161 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufs1Rat(+)-epicatechin-3-O-gallate multiple interactionsISONDUFS1 (Homo sapiens)6480464[Gallic Acid co-treated with gallocatechol co-treated with epigallocatechin gallate co-treated with epicatechin gallate] inhibits the reaction [Hydrogen Peroxide results in decreased expression of NDUFS1 mRNA] and BMAL1 protein affects the reaction [[Gallic Acid co-treated with gallocatechol co-treated with epigallocatechin gallate co-treated with epicatechin gallate] inhibits the reaction [Hydrogen Peroxide results in decreased expression of NDUFS1 mRNA]]CTDPMID:29061316
Ndufs1Rat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of NDUFS1 mRNA]CTDPMID:31150632
Ndufs1Rat(-)-epigallocatechin 3-gallate multiple interactionsISONDUFS1 (Homo sapiens)6480464[Gallic Acid co-treated with gallocatechol co-treated with epigallocatechin gallate co-treated with epicatechin gallate] inhibits the reaction [Hydrogen Peroxide results in decreased expression of NDUFS1 mRNA] and BMAL1 protein affects the reaction [[Gallic Acid co-treated with gallocatechol co-treated with epigallocatechin gallate co-treated with epicatechin gallate] inhibits the reaction [Hydrogen Peroxide results in decreased expression of NDUFS1 mRNA]]CTDPMID:29061316
Ndufs1Rat(R,R)-tramadol decreases expressionISONDUFS1 (Homo sapiens)6480464Tramadol results in decreased expression of NDUFS1 mRNACTDPMID:27317026
Ndufs1Rat1,2-dimethylhydrazine multiple interactionsISONdufs1 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of NDUFS1 mRNACTDPMID:22206623
Ndufs1Rat1,2-dimethylhydrazine decreases expressionISONdufs1 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of NDUFS1 mRNACTDPMID:22206623
Ndufs1Rat1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine multiple interactionsISONdufs1 (Mus musculus)6480464NDUFS1 mutant form inhibits the reaction [[EN1 protein co-treated with EN2 protein] inhibits the reaction [1-Methyl-4-phenyl-1 more ...CTDPMID:21892157
Ndufs1Rat17alpha-ethynylestradiol multiple interactionsISONdufs1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of NDUFS1 mRNACTDPMID:17942748
Ndufs1Rat17beta-estradiol decreases expressionISONdufs1 (Mus musculus)6480464Estradiol results in decreased expression of NDUFS1 mRNACTDPMID:39298647
Ndufs1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISONdufs1 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of NDUFS1 mRNACTDPMID:17942748
Ndufs1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISONDUFS1 (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of NDUFS1 mRNACTDPMID:23152189
Ndufs1Rat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISONDUFS1 (Homo sapiens)64804642-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide inhibits the reaction [Tetrachlorodibenzodioxin results in decreased expression of NDUFS1 mRNA] and alpha-naphthoflavone inhibits the reaction [Tetrachlorodibenzodioxin results in decreased expression of NDUFS1 mRNA]CTDPMID:23152189
Ndufs1Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of NDUFS1 mRNACTDPMID:21215274
Ndufs1Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISONdufs1 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of NDUFS1 mRNACTDPMID:20399798
Ndufs1Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether decreases expressionEXP 64804642 more ...CTDPMID:19954255
Ndufs1Rat2,6-dinitrotoluene affects expressionEXP 64804642 and 6-dinitrotoluene affects the expression of NDUFS1 mRNACTDPMID:21346803
Ndufs1Rat2-hydroxypropanoic acid decreases expressionISONDUFS1 (Homo sapiens)6480464Lactic Acid results in decreased expression of NDUFS1 mRNACTDPMID:30851411
Ndufs1Rat3-chloropropane-1,2-diol decreases expressionEXP 6480464alpha-Chlorohydrin analog results in decreased expression of NDUFS1 proteinCTDPMID:26597043
Ndufs1Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISONDUFS1 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of NDUFS1 mRNACTDPMID:28628672
Ndufs1Rat4,4'-sulfonyldiphenol multiple interactionsISONDUFS1 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of NDUFS1 mRNACTDPMID:28628672

1 to 20 of 161 rows

Biological Process
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufs1RatATP synthesis coupled electron transport involved_inIEAInterPro:IPR0002831600115GO_REF:0000002InterProGO_REF:0000002
Ndufs1Ratbiological_process  ND 159840702/07: no relevant rat dataRGD 
Ndufs1Ratcellular respiration involved_inISONDUFS1 (Homo sapiens)1624291 PMID:15186778RGDPMID:15186778
Ndufs1Ratcellular respiration involved_inIEAUniProtKB:P28331 and ensembl:ENSP000002331901600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufs1Ratmitochondrial electron transport, NADH to ubiquinone involved_inISONDUFS1 (Homo sapiens)1624291 PMID:31557978RGDPMID:31557978
Ndufs1Ratmitochondrial electron transport, NADH to ubiquinone involved_inIEAUniProtKB:P28331 and ensembl:ENSP000002331901600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufs1Ratmitochondrial electron transport, NADH to ubiquinone involved_inISSUniProtKB:P283311600115GO_REF:0000024UniProtGO_REF:0000024
Ndufs1Ratmitochondrial respiratory chain complex I assembly involved_inISSUniProtKB:P283311600115GO_REF:0000024UniProtGO_REF:0000024
Ndufs1Ratmitochondrial respiratory chain complex I assembly involved_inIEAUniProtKB:P28331 and ensembl:ENSP000002331901600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufs1Ratmitochondrial respiratory chain complex I assembly involved_inIBAMGI:2443241 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Ndufs1Ratmitochondrial respiratory chain complex I assembly involved_inISONdufs1 (Mus musculus)1624291 PMID:27799543RGDPMID:27799543
Ndufs1Ratmitochondrial respiratory chain complex I assembly involved_inIEAUniProtKB:Q91VD9 and ensembl:ENSMUSP000000271111600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufs1Ratmitochondrial respiratory chain complex I assembly involved_inISONDUFS1 (Homo sapiens)1624291 PMID:16478720 more ...RGDPMID:16478720 more ...
Ndufs1Ratproton transmembrane transport involved_inIEAGO:00081371600115GO_REF:0000108GOCGO_REF:0000108
1 to 14 of 14 rows

Cellular Component
1 to 20 of 27 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufs1Ratmembrane located_inIEAARBA:ARBA000287631600115GO_REF:0000117UniProtGO_REF:0000117
Ndufs1Ratmembrane located_inIEAInterPro:IPR0002831600115GO_REF:0000002InterProGO_REF:0000002
Ndufs1Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Ndufs1Ratmitochondrial inner membrane located_inISSUniProtKB:P156901600115GO_REF:0000024UniProtGO_REF:0000024
Ndufs1Ratmitochondrial inner membrane located_inIEAUniProtKB-KW:KW-09991600115GO_REF:0000043UniProtGO_REF:0000043
Ndufs1Ratmitochondrial inner membrane is_active_inIEAUniProtKB:Q91VD9 and ensembl:ENSMUSP000000271111600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufs1Ratmitochondrial inner membrane located_inISONDUFS1 (Homo sapiens)1624291 PMID:28844695RGDPMID:28844695
Ndufs1Ratmitochondrial inner membrane located_inIEAUniProtKB:P28331 and ensembl:ENSP000002331901600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufs1Ratmitochondrial inner membrane located_inIEAUniProtKB-SubCell:SL-01681600115GO_REF:0000044UniProtGO_REF:0000044
Ndufs1Ratmitochondrial inner membrane located_inISSUniProtKB:P257081600115GO_REF:0000024UniProtGO_REF:0000024
Ndufs1Ratmitochondrial inner membrane is_active_inISONdufs1 (Mus musculus)1624291 PMID:38575788RGDPMID:38575788
Ndufs1Ratmitochondrial intermembrane space located_inISONDUFS1 (Homo sapiens)1624291 PMID:15186778RGDPMID:15186778
Ndufs1Ratmitochondrial intermembrane space located_inIEAUniProtKB:P28331 and ensembl:ENSP000002331901600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufs1Ratmitochondrial intermembrane space located_inISSUniProtKB:P283311600115GO_REF:0000024UniProtGO_REF:0000024
Ndufs1Ratmitochondrion located_inISONdufs1 (Mus musculus)1624291 PMID:32072193RGDPMID:32072193
Ndufs1Ratmitochondrion located_inIEAUniProtKB:E5KRK5 and ensembl:ENSP000002331901600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufs1Ratmitochondrion located_inIEAUniProtKB:Q91VD9 and ensembl:ENSMUSP000000271111600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufs1Ratmitochondrion located_inISSUniProtKB:P283311600115GO_REF:0000024UniProtGO_REF:0000024
Ndufs1Ratmitochondrion located_inIEAUniProtKB-KW:KW-04961600115GO_REF:0000043UniProtGO_REF:0000043
Ndufs1Ratmitochondrion located_inISONDUFS1 (Homo sapiens)1624291 PMID:30879903RGDPMID:30879903
1 to 20 of 27 rows

Molecular Function
1 to 20 of 25 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufs1Rat2 iron, 2 sulfur cluster binding enablesIEAUniProtKB-KW:KW-00011600115GO_REF:0000043UniProtGO_REF:0000043
Ndufs1Rat4 iron, 4 sulfur cluster binding enablesIEAUniProtKB-KW:KW-00041600115GO_REF:0000043UniProtGO_REF:0000043
Ndufs1Ratelectron transfer activity enablesISONdufs1 (Mus musculus)1624291 PMID:27799543RGDPMID:27799543
Ndufs1Ratelectron transfer activity enablesIEAUniProtKB:Q91VD9 and ensembl:ENSMUSP000000271111600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufs1Ratiron-sulfur cluster binding enablesIEAInterPro:IPR001041 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Ndufs1Ratiron-sulfur cluster binding enablesIEAUniProtKB-KW:KW-04111600115GO_REF:0000043UniProtGO_REF:0000043
Ndufs1Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Ndufs1RatNADH dehydrogenase (ubiquinone) activity contributes_toISONDUFS1 (Homo sapiens)1624291 PMID:15824269 more ...RGDPMID:15824269 more ...
Ndufs1RatNADH dehydrogenase (ubiquinone) activity enablesIEAEC:7.1.1.21600115GO_REF:0000003UniProtGO_REF:0000003
Ndufs1RatNADH dehydrogenase (ubiquinone) activity contributes_toIBAPANTHER:PTN002267020 and UniProtKB:P283311600115GO_REF:0000033GO_CentralGO_REF:0000033
Ndufs1RatNADH dehydrogenase (ubiquinone) activity contributes_toIEAUniProtKB:P28331 and ensembl:ENSP000002331901600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufs1RatNADH dehydrogenase (ubiquinone) activity enablesISONdufs1 (Mus musculus)1624291 PMID:27799543 and PMID:32072193RGDPMID:27799543 and PMID:32072193
Ndufs1RatNADH dehydrogenase (ubiquinone) activity enablesIEARHEA:290911600115GO_REF:0000116RHEAGO_REF:0000116
Ndufs1RatNADH dehydrogenase (ubiquinone) activity enablesIEAUniProtKB:Q91VD9 and ensembl:ENSMUSP000000271111600115GO_REF:0000107EnsemblGO_REF:0000107
Ndufs1RatNADH dehydrogenase (ubiquinone) activity enablesISONDUFS1 (Homo sapiens)1624291 PMID:30879903 and PMID:31557978RGDPMID:30879903 and PMID:31557978
Ndufs1RatNADH dehydrogenase (ubiquinone) activity enablesIEAInterPro:IPR0002831600115GO_REF:0000002InterProGO_REF:0000002
Ndufs1RatNADH dehydrogenase (ubiquinone) activity enablesISSUniProtKB:P283311600115GO_REF:0000024UniProtGO_REF:0000024
Ndufs1RatNADH dehydrogenase (ubiquinone) activity contributes_toISSUniProtKB:P283311600115GO_REF:0000024UniProtGO_REF:0000024
Ndufs1Ratoxidoreductase activity enablesIEAUniProtKB-KW:KW-05601600115GO_REF:0000043UniProtGO_REF:0000043
Ndufs1Ratoxidoreductase activity enablesIEAInterPro:IPR006656 more ...1600115GO_REF:0000002InterProGO_REF:0000002
1 to 20 of 25 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ndufs1RatAlzheimer's disease pathway   IEA 6907045 KEGGrno:05010
Ndufs1RatHuntington's disease pathway   IEA 6907045 KEGGrno:05016
Ndufs1Ratoxidative phosphorylation pathway  IEA 6907045 KEGGrno:00190
Ndufs1RatParkinson's disease pathway   IEA 6907045 KEGGrno:05012

1 to 13 of 13 rows
#
Reference Title
Reference Citation
1. Large-scale deletion and point mutations of the nuclear NDUFV1 and NDUFS1 genes in mitochondrial complex I deficiency. Benit P, etal., Am J Hum Genet 2001 Jun;68(6):1344-52. Epub 2001 May 7.
2. Quantitative mapping of reversible mitochondrial Complex I cysteine oxidation in a Parkinson disease mouse model. Danielson SR, etal., J Biol Chem. 2011 Mar 4;286(9):7601-8. Epub 2011 Jan 1.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. GSH monoethyl ester rescues mitochondrial defects in cystic fibrosis models. Kelly-Aubert M, etal., Hum Mol Genet. 2011 Jul 15;20(14):2745-59. Epub 2011 Apr 25.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Caloric restriction primes mitochondria for ischemic stress by deacetylating specific mitochondrial proteins of the electron transport chain. Shinmura K, etal., Circ Res. 2011 Aug 5;109(4):396-406. doi: 10.1161/CIRCRESAHA.111.243097. Epub 2011 Jun 23.
13. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
1 to 13 of 13 rows
PMID:12611891   PMID:14651853   PMID:15186778   PMID:15489334   PMID:15824269   PMID:16478720   PMID:16870178   PMID:17634366   PMID:18614015   PMID:18973802   PMID:19429081   PMID:21752959  
PMID:23106098   PMID:25002582   PMID:26316108   PMID:29476059   PMID:29867124   PMID:36402252  



Ndufs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8972,040,286 - 72,073,605 (-)NCBIGRCr8
mRatBN7.2964,546,430 - 64,579,751 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl964,546,225 - 64,579,893 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx973,049,877 - 73,083,200 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0978,170,168 - 78,204,120 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0976,476,771 - 76,510,751 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0969,919,863 - 69,953,182 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl969,919,867 - 69,953,182 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0969,728,932 - 69,762,079 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4961,798,141 - 61,831,964 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1961,945,124 - 61,978,946 (-)NCBI
Celera961,964,379 - 61,997,783 (-)NCBICelera
Cytogenetic Map9q32NCBI
NDUFS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382206,114,817 - 206,159,444 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2206,114,817 - 206,159,509 (-)EnsemblGRCh38hg38GRCh38
GRCh372206,979,541 - 207,024,168 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362206,696,048 - 206,732,432 (-)NCBINCBI36Build 36hg18NCBI36
Build 342206,813,308 - 206,849,693NCBI
Celera2200,745,218 - 200,781,616 (-)NCBICelera
Cytogenetic Map2q33.3NCBI
HuRef2198,836,332 - 198,872,823 (-)NCBIHuRef
CHM1_12206,994,334 - 207,030,799 (-)NCBICHM1_1
T2T-CHM13v2.02206,596,710 - 206,641,337 (-)NCBIT2T-CHM13v2.0
Ndufs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,182,751 - 63,215,981 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl163,182,755 - 63,215,992 (-)EnsemblGRCm39 Ensembl
GRCm38163,143,592 - 63,176,822 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl163,143,596 - 63,176,833 (-)EnsemblGRCm38mm10GRCm38
MGSCv37163,190,166 - 63,223,396 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36163,077,874 - 63,110,985 (-)NCBIMGSCv36mm8
Celera163,653,959 - 63,687,212 (-)NCBICelera
Cytogenetic Map1C2NCBI
cM Map132.29NCBI
Ndufs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554578,838,216 - 8,883,481 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554578,838,216 - 8,879,059 (+)NCBIChiLan1.0ChiLan1.0
NDUFS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213108,735,668 - 108,773,190 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B108,751,932 - 108,788,172 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B93,363,092 - 93,399,326 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B211,493,021 - 211,528,496 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B211,493,021 - 211,528,496 (-)Ensemblpanpan1.1panPan2
NDUFS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13714,680,908 - 14,713,838 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3714,683,083 - 14,713,754 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3715,557,654 - 15,590,612 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03714,616,264 - 14,649,231 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3714,616,260 - 14,649,178 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13714,570,542 - 14,603,481 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03714,542,759 - 14,575,738 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03714,539,074 - 14,572,034 (-)NCBIUU_Cfam_GSD_1.0
Ndufs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303162,868,082 - 162,903,922 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366312,499,062 - 2,538,801 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366312,503,353 - 2,538,957 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15109,409,771 - 109,451,676 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115109,413,726 - 109,451,813 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215120,962,189 - 121,000,375 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11091,893,337 - 91,927,559 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1091,893,616 - 91,927,592 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040107,451,554 - 107,485,782 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufs1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247659,962,447 - 9,993,790 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247659,962,254 - 9,993,790 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Ndufs1
169 total Variants

Predicted Target Of
Summary Value
Count of predictions:64
Count of miRNA genes:50
Interacting mature miRNAs:62
Transcripts:ENSRNOT00000015852
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 34 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat

1 to 10 of 34 rows
RH134359  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2964,546,412 - 64,546,625 (+)MAPPERmRatBN7.2
Rnor_6.0969,919,846 - 69,920,058NCBIRnor6.0
Rnor_5.0969,728,915 - 69,729,127UniSTSRnor5.0
RGSC_v3.4961,798,124 - 61,798,336UniSTSRGSC3.4
Celera961,964,362 - 61,964,574UniSTS
RH 3.4 Map9530.1UniSTS
Cytogenetic Map9q31UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000015852   ⟹   ENSRNOP00000015851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl964,546,225 - 64,579,809 (-)Ensembl
Rnor_6.0 Ensembl969,919,867 - 69,953,182 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098172   ⟹   ENSRNOP00000083908
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl964,546,225 - 64,575,129 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104288   ⟹   ENSRNOP00000087012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl964,546,243 - 64,579,893 (-)Ensembl
RefSeq Acc Id: NM_001005550   ⟹   NP_001005550
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8972,040,286 - 72,073,605 (-)NCBI
mRatBN7.2964,546,430 - 64,579,751 (-)NCBI
Rnor_6.0969,919,863 - 69,953,182 (-)NCBI
Rnor_5.0969,728,932 - 69,762,079 (-)NCBI
RGSC_v3.4961,798,141 - 61,831,964 (-)RGD
Celera961,964,379 - 61,997,783 (-)RGD
Sequence:
1 to 10 of 10 rows
Protein RefSeqs NP_001005550 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH81892 (Get FASTA)   NCBI Sequence Viewer  
  EDL98900 (Get FASTA)   NCBI Sequence Viewer  
  EDL98901 (Get FASTA)   NCBI Sequence Viewer  
  EDL98902 (Get FASTA)   NCBI Sequence Viewer  
  EDL98903 (Get FASTA)   NCBI Sequence Viewer  
  EDL98904 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000087012
  ENSRNOP00000087012.1
GenBank Protein Q66HF1 (Get FASTA)   NCBI Sequence Viewer  
1 to 10 of 10 rows
RefSeq Acc Id: NP_001005550   ⟸   NM_001005550
- Peptide Label: precursor
- UniProtKB: Q66HF1 (UniProtKB/Swiss-Prot),   A6IPF8 (UniProtKB/TrEMBL),   A0A8I5ZXM3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015851   ⟸   ENSRNOT00000015852
Ensembl Acc Id: ENSRNOP00000083908   ⟸   ENSRNOT00000098172
Ensembl Acc Id: ENSRNOP00000087012   ⟸   ENSRNOT00000104288
Name Modeler Protein Id AA Range Protein Structure
AF-Q66HF1-F1-model_v2 AlphaFold Q66HF1 1-727 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13696710
Promoter ID:EPDNEW_R7235
Type:multiple initiation site
Name:Ndufs1_1
Description:NADH:ubiquinone oxidoreductase core subunit S1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0969,953,221 - 69,953,281EPDNEW


1 to 40 of 49 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-27353 BioCyc
BioCyc Pathway PWY-3781 [aerobic respiration I (cytochrome c)] BioCyc
BioCyc Pathway Image PWY-3781 BioCyc
Ensembl Genes ENSRNOG00000011849 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000104288 ENTREZGENE
  ENSRNOT00000104288.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.20.740 UniProtKB/Swiss-Prot
  3.30.200.210 UniProtKB/Swiss-Prot
  3.30.70.20 UniProtKB/Swiss-Prot
  3.40.50.740 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7109875 IMAGE-MGC_LOAD
InterPro 2Fe-2S_ferredoxin-like_sf UniProtKB/Swiss-Prot
  2Fe-2S_ferredoxin-type UniProtKB/Swiss-Prot
  Mopterin_OxRdtase UniProtKB/Swiss-Prot
  Mopterin_OxRdtase_4Fe-4S_dom UniProtKB/Swiss-Prot
  NADH_UbQ_OxRdtase_75kDa_su_CS UniProtKB/Swiss-Prot
  NADH_UbQ_OxRdtase_ferredoxin UniProtKB/Swiss-Prot
  NADH_UbQ_OxRdtase_Gsu UniProtKB/Swiss-Prot
  NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd UniProtKB/Swiss-Prot
  NuoG_C UniProtKB/Swiss-Prot
  Prok_molybdopt-oxidoreductase UniProtKB/Swiss-Prot
KEGG Report rno:301458 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93795 IMAGE-MGC_LOAD
NCBI Gene 301458 ENTREZGENE
PANTHER NADH-UBIQUINONE OXIDOREDUCTASE 75 KDA SUBUNIT, MITOCHONDRIAL UniProtKB/Swiss-Prot
  RESPIRATORY NITRATE REDUCTASE UniProtKB/Swiss-Prot
Pfam Fer2_4 UniProtKB/Swiss-Prot
  Molybdopterin UniProtKB/Swiss-Prot
  NADH-G_4Fe-4S_3 UniProtKB/Swiss-Prot
  NADH_dhqG_C UniProtKB/Swiss-Prot
  NDSU1_4Fe-4S UniProtKB/Swiss-Prot
  Nqo3_Fer4 UniProtKB/Swiss-Prot
PhenoGen Ndufs1 PhenoGen
PROSITE 2FE2S_FER_2 UniProtKB/Swiss-Prot
  4FE4S_HC3 UniProtKB/Swiss-Prot
  4FE4S_MOW_BIS_MGD UniProtKB/Swiss-Prot
  COMPLEX1_75K_1 UniProtKB/Swiss-Prot
  COMPLEX1_75K_2 UniProtKB/Swiss-Prot
  COMPLEX1_75K_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000011849 RatGTEx
1 to 40 of 49 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-29 Ndufs1  NADH:ubiquinone oxidoreductase core subunit S1  Ndufs1  NADH dehydrogenase (ubiquinone) Fe-S protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Ndufs1  NADH dehydrogenase (ubiquinone) Fe-S protein 1    NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa  Name updated 1299863 APPROVED
2005-07-29 Ndufs1  NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa      Symbol and Name status set to provisional 70820 PROVISIONAL