N4bp2l2 (NEDD4 binding protein 2-like 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: N4bp2l2 (NEDD4 binding protein 2-like 2) Rattus norvegicus
Analyze
Symbol: N4bp2l2
Name: NEDD4 binding protein 2-like 2
RGD ID: 1359603
Description: Predicted to enable enzyme binding activity and transcription corepressor activity. Predicted to be involved in negative regulation of hematopoietic stem cell differentiation; negative regulation of transcription by RNA polymerase II; and positive regulation of hematopoietic stem cell proliferation. Predicted to act upstream of or within blastocyst development. Predicted to be part of transcription repressor complex. Predicted to be active in nucleus. Orthologous to human N4BP2L2 (NEDD4 binding protein 2 like 2); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100909860; MGC94223; NEDD4-binding protein 2-like 2; phosphonoformate immuno-associated protein 5 homolog; similar to hypothetical protein from BCRA2 region; uncharacterized LOC100909860; uncharacterized protein LOC100909860
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8124,972,967 - 5,038,027 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl124,972,990 - 5,033,405 (-)EnsemblGRCr8
mRatBN7.212137,342 - 200,292 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl12103,590 - 197,784 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx12706,021 - 768,933 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0121,228,260 - 1,291,179 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.012127,903 - 190,623 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.012627,128 - 650,604 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl12628,488 - 650,376 (-)Ensemblrn6Rnor6.0
Rnor_5.012611,943 - 635,074 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4124,184,417 - 4,205,550 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera121,887,059 - 1,908,425 (-)NCBICelera
RGSC_v3.1124,184,416 - 4,205,549 (+)NCBI
Cytogenetic Map12p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
chlorpyrifos  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
imidacloprid  (EXP)
lead diacetate  (ISO)
leflunomide  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
testosterone enanthate  (ISO)
thapsigargin  (ISO)
theophylline  (ISO)
thiabendazole  (EXP)
thimerosal  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:18360097   PMID:19056867   PMID:19506020  


Genomics

Comparative Map Data
N4bp2l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8124,972,967 - 5,038,027 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl124,972,990 - 5,033,405 (-)EnsemblGRCr8
mRatBN7.212137,342 - 200,292 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl12103,590 - 197,784 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx12706,021 - 768,933 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0121,228,260 - 1,291,179 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.012127,903 - 190,623 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.012627,128 - 650,604 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl12628,488 - 650,376 (-)Ensemblrn6Rnor6.0
Rnor_5.012611,943 - 635,074 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4124,184,417 - 4,205,550 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera121,887,059 - 1,908,425 (-)NCBICelera
RGSC_v3.1124,184,416 - 4,205,549 (+)NCBI
Cytogenetic Map12p12NCBI
N4BP2L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381332,432,485 - 32,538,868 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1332,432,417 - 32,538,885 (-)Ensemblhg38GRCh38
GRCh371333,006,622 - 33,113,005 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361331,904,930 - 32,010,936 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1314,073,721 - 14,179,731 (-)NCBICelera
Cytogenetic Map13q13.1NCBI
HuRef1313,818,368 - 13,923,753 (-)NCBIHuRef
CHM1_11332,974,162 - 33,080,564 (-)NCBICHM1_1
T2T-CHM13v2.01331,649,729 - 31,756,133 (-)NCBIT2T-CHM13v2.0
N4bp2l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395150,515,310 - 150,589,213 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5150,531,472 - 150,589,648 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385150,599,931 - 150,665,748 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5150,608,007 - 150,666,183 (-)Ensemblmm10GRCm38
MGSCv375151,438,548 - 151,468,187 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365150,916,589 - 150,933,956 (-)NCBIMGSCv36mm8
Celera5148,640,440 - 148,670,079 (-)NCBICelera
Cytogenetic Map5G3NCBI
cM Map589.57NCBI
N4bp2l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543113,314,075 - 13,418,090 (+)NCBIChiLan1.0ChiLan1.0
N4BP2L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21431,998,173 - 32,106,760 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11323,105,030 - 23,213,013 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01313,691,326 - 13,803,162 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11332,133,618 - 32,231,146 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1332,133,603 - 32,231,003 (-)EnsemblpanPan2panpan1.1
N4BP2L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1257,622,032 - 7,694,396 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl257,623,670 - 7,694,398 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha257,651,935 - 7,724,601 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0257,718,162 - 7,791,082 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl257,718,103 - 7,790,814 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1257,618,218 - 7,691,056 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,616,390 - 7,689,291 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0257,673,686 - 7,746,570 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
N4bp2l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945168,816,704 - 168,905,434 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647227,045,052 - 27,134,170 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
N4BP2L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1118,891,053 - 8,997,810 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2118,713,909 - 8,737,772 (+)NCBISscrofa10.2Sscrofa10.2susScr3
N4BP2L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1311,191,215 - 11,287,434 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl311,197,302 - 11,285,607 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605733,065,334 - 33,161,891 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
N4bp2l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247765,295,054 - 5,467,454 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
N4bp2l2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v116158,485 - 220,836 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in N4bp2l2
1261 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:22
Count of miRNA genes:22
Interacting mature miRNAs:22
Transcripts:ENSRNOT00000001468
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12115486827Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1357337Gluco3Glucose level QTL 30.0004adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)12116966671Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
61334Gluco17Glucose level QTL 176.3adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)12116966671Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12111869600Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat

Markers in Region
RH130841  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.212196,642 - 196,829 (+)MAPPERmRatBN7.2
Rnor_6.012646,961 - 647,147NCBIRnor6.0
Rnor_5.012631,230 - 631,416UniSTSRnor5.0
RGSC_v3.4124,187,436 - 4,187,622UniSTSRGSC3.4
Celera121,904,915 - 1,905,101UniSTS
Cytogenetic Map12p12UniSTS
RH131153  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.212178,912 - 179,129 (+)MAPPERmRatBN7.2
Rnor_6.012628,627 - 628,843NCBIRnor6.0
Rnor_5.012613,442 - 613,658UniSTSRnor5.0
RGSC_v3.4124,205,194 - 4,205,410UniSTSRGSC3.4
Celera121,887,199 - 1,887,415UniSTS
Cytogenetic Map12p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000001468   ⟹   ENSRNOP00000001468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl12170,056 - 197,784 (-)Ensembl
Rnor_6.0 Ensembl12628,488 - 650,376 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111844   ⟹   ENSRNOP00000081414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl124,972,990 - 5,033,405 (-)Ensembl
mRatBN7.2 Ensembl12137,355 - 197,784 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116179   ⟹   ENSRNOP00000078717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl125,007,799 - 5,033,405 (-)Ensembl
mRatBN7.2 Ensembl12145,065 - 197,784 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118063   ⟹   ENSRNOP00000088209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl124,972,990 - 5,033,405 (-)Ensembl
mRatBN7.2 Ensembl12103,590 - 197,784 (-)Ensembl
RefSeq Acc Id: NM_001005533   ⟹   NP_001005533
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8125,014,389 - 5,035,676 (-)NCBI
mRatBN7.212178,766 - 200,055 (-)NCBI
Rnor_6.012628,487 - 650,376 (-)NCBI
Rnor_5.012611,943 - 635,074 (-)NCBI
RGSC_v3.4124,184,417 - 4,205,550 (+)RGD
Celera121,887,059 - 1,908,425 (-)RGD
Sequence:
RefSeq Acc Id: NM_001400958   ⟹   NP_001387887
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8124,972,967 - 5,035,676 (-)NCBI
mRatBN7.212137,342 - 200,055 (-)NCBI
RefSeq Acc Id: XM_006248735   ⟹   XP_006248797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8124,980,392 - 5,035,862 (-)NCBI
mRatBN7.212144,766 - 200,259 (-)NCBI
Rnor_6.012627,128 - 650,280 (-)NCBI
Rnor_5.012611,943 - 635,074 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039089150   ⟹   XP_038945078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8125,014,396 - 5,035,858 (-)NCBI
mRatBN7.212171,721 - 200,255 (-)NCBI
RefSeq Acc Id: XM_039089151   ⟹   XP_038945079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8124,972,967 - 5,035,910 (-)NCBI
mRatBN7.212137,342 - 200,292 (-)NCBI
RefSeq Acc Id: XM_039089152   ⟹   XP_038945080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8125,014,396 - 5,032,313 (-)NCBI
mRatBN7.212137,342 - 196,693 (-)NCBI
RefSeq Acc Id: XM_063271110   ⟹   XP_063127180
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8124,972,967 - 5,038,027 (-)NCBI
RefSeq Acc Id: XM_063271111   ⟹   XP_063127181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8124,972,967 - 5,038,027 (-)NCBI
RefSeq Acc Id: XM_063271112   ⟹   XP_063127182
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8125,014,396 - 5,036,163 (-)NCBI
RefSeq Acc Id: XM_063271113   ⟹   XP_063127183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8125,014,396 - 5,038,027 (-)NCBI
RefSeq Acc Id: XM_063271114   ⟹   XP_063127184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8124,972,967 - 5,032,496 (-)NCBI
RefSeq Acc Id: NP_001005533   ⟸   NM_001005533
- Peptide Label: isoform 2
- UniProtKB: Q66H65 (UniProtKB/Swiss-Prot),   A0A8I5ZLI8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248797   ⟸   XM_006248735
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZSH6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000001468   ⟸   ENSRNOT00000001468
RefSeq Acc Id: XP_038945079   ⟸   XM_039089151
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AIC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038945080   ⟸   XM_039089152
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038945078   ⟸   XM_039089150
- Peptide Label: isoform X5
- UniProtKB: A6KSV3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000088209   ⟸   ENSRNOT00000118063
Ensembl Acc Id: ENSRNOP00000078717   ⟸   ENSRNOT00000116179
Ensembl Acc Id: ENSRNOP00000081414   ⟸   ENSRNOT00000111844
RefSeq Acc Id: NP_001387887   ⟸   NM_001400958
- Peptide Label: isoform 1
- UniProtKB: A0A8I6AIC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127181   ⟸   XM_063271111
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AIC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127180   ⟸   XM_063271110
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AIC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127184   ⟸   XM_063271114
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063127183   ⟸   XM_063271113
- Peptide Label: isoform X6
- UniProtKB: A6KSV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127182   ⟸   XM_063271112
- Peptide Label: isoform X6
- UniProtKB: A6KSV3 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66H65-F1-model_v2 AlphaFold Q66H65 1-574 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698358
Promoter ID:EPDNEW_R8883
Type:initiation region
Name:N4bp2l2_1
Description:NEDD4 binding protein 2-like 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.012650,371 - 650,431EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359603 AgrOrtholog
BioCyc Gene G2FUF-20523 BioCyc
Ensembl Genes ENSRNOG00000001108 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001468.6 UniProtKB/Swiss-Prot
  ENSRNOT00000111844 ENTREZGENE
  ENSRNOT00000116179 ENTREZGENE
  ENSRNOT00000118063 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7131024 IMAGE-MGC_LOAD
InterPro NEDD4_b_p2 UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
KEGG Report rno:288416 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94223 IMAGE-MGC_LOAD
NCBI Gene 288416 ENTREZGENE
PANTHER PTHR13308 UniProtKB/Swiss-Prot
  PTHR13308:SF23 UniProtKB/Swiss-Prot
Pfam AAA_33 UniProtKB/Swiss-Prot
PhenoGen N4bp2l2 PhenoGen
RatGTEx ENSRNOG00000001108 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0A8I5ZLI8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZSH6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AIC7 ENTREZGENE, UniProtKB/TrEMBL
  A6KSV3 ENTREZGENE, UniProtKB/TrEMBL
  N42L2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 N4bp2l2  NEDD4 binding protein 2-like 2  LOC100909860  uncharacterized LOC100909860  Data merged from RGD:6501161 737654 PROVISIONAL
2012-07-05 LOC100909860  uncharacterized LOC100909860      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-06 N4bp2l2  NEDD4 binding protein 2-like 2  MGC94223  similar to hypothetical protein from BCRA2 region  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 MGC94223  similar to hypothetical protein from BCRA2 region      Symbol and Name status set to provisional 70820 PROVISIONAL