Advanced Search (OLGA)

Gene: Fblim1 (filamin binding LIM protein 1) Rattus norvegicus

Analyze

Symbol:

Fblim1

Name:

filamin binding LIM protein 1

RGD ID:

1359551

Description:

Enables mRNA 3'-UTR binding activity and mRNA CDS binding activity. Involved in several processes, including cellular response to amino acid starvation; circadian rhythm; and regulation of gene expression. Located in perinuclear region of cytoplasm. Orthologous to human FBLIM1 (filamin binding LIM protein 1); PARTICIPATES IN integrin mediated signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Cal; CSX-associated LIM; filamin-binding LIM protein 1; heterogeneous nuclear ribonucleoprotein L; hnRNP L; Hnrnpl; MGC105665

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FBLIM1 (filamin binding LIM protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB
Mus musculus (house mouse):	Fblim1 (filamin binding LIM protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fblim1 (filamin binding LIM protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FBLIM1 (filamin binding LIM protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FBLIM1 (filamin binding LIM protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fblim1 (filamin binding LIM protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FBLIM1 (filamin binding LIM protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FBLIM1 (filamin binding LIM protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Fblim1 (filamin binding LIM protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Hnrnpl (heterogeneous nuclear ribonucleoprotein L)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fblim1 (filamin binding LIM protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	FBLIM1 (filamin binding LIM protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fblim1 (filamin binding LIM protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fblim1 (filamin binding LIM protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	hnrnpl2 (heterogeneous nuclear ribonucleoprotein L2)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hrpl-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	hnrnpl	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	sm	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	hnrnpl	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	fblim1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	159,167,004 - 159,198,578 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	159,167,004 - 159,196,853 (-)	Ensembl				GRCr8
mRatBN7.2	5	153,883,945 - 153,915,524 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	153,883,960 - 153,913,757 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	156,568,849 - 156,598,883 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	158,342,136 - 158,372,165 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	158,331,314 - 158,361,338 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	160,122,466 - 160,158,921 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	160,122,425 - 160,158,386 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	163,841,377 - 163,867,441 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	160,468,558 - 160,495,015 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	152,241,216 - 152,267,207 (-)	NCBI		Celera
RGSC_v3.1	5	160,478,745 - 160,505,203 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,6-dimethoxyphenol (ISO)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (ISO)

acrylamide (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (EXP)

alpha-Zearalanol (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

bisphenol F (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

cisplatin (EXP)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

DDE (ISO)

decabromodiphenyl ether (EXP)

dextran sulfate (ISO)

dibutyl phthalate (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

Evodiamine (ISO)

ferric oxide (ISO)

folic acid (ISO)

furan (EXP)

furfural (ISO)

gentamycin (EXP)

inulin (ISO)

isoprenaline (ISO)

ivermectin (ISO)

ketamine (EXP)

lead diacetate (ISO)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

methamphetamine (EXP)

methylmercury chloride (ISO)

morphine (EXP)

N-nitrosodiethylamine (EXP,ISO)

N-Nitrosopyrrolidine (ISO)

nitrofen (EXP)

O-methyleugenol (ISO)

oxaliplatin (EXP)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

propanal (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

sodium fluoride (ISO)

Soman (EXP)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

thiram (ISO)

topotecan (EXP)

trimellitic anhydride (ISO)

triptonide (ISO)

troglitazone (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cell adhesion (IEA)

cell-cell adhesion (IBA,ISO)

mRNA processing (IEA)

negative regulation of DNA-templated transcription (ISS)

regulation of alternative mRNA splicing, via spliceosome (ISS)

regulation of cell shape (IEA)

regulation of integrin activation (ISO)

regulation of RNA splicing (IBA)

Cellular Component

cell junction (ISO)

cell periphery (ISO)

chromatin (ISS)

cytoplasm (IEA,ISO)

focal adhesion (IBA,IEA,ISO)

nucleoplasm (IEA,ISS)

nucleus (IBA,IEA)

ribonucleoprotein complex (IEA,ISS)

ribonucleoprotein granule (ISS)

stress fiber (IBA,IEA,ISO)

Molecular Function

filamin binding (IBA,ISO)

metal ion binding (IEA)

mRNA binding (IBA)

nucleic acid binding (IEA)

pre-mRNA intronic binding (ISS)

protein binding (ISO)

RNA binding (IEA)

transcription cis-regulatory region binding (ISS)

Molecular Pathway Annotations Click to see Annotation Detail View

integrin mediated signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Talins and kindlins: partners in integrin-mediated adhesion.	Calderwood DA, etal., Nat Rev Mol Cell Biol. 2013 Aug;14(8):503-17. doi: 10.1038/nrm3624. Epub 2013 Jul 17.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8.	A new member of the LIM protein family binds to filamin B and localizes at stress fibers.	Takafuta T, etal., J Biol Chem 2003 Apr 4;278(14):12175-81. Epub 2002 Dec 20.

Additional References at PubMed

PMID:12576095	PMID:15798208	PMID:16980303	PMID:18161049	PMID:18829455	PMID:19074766	PMID:19273590	PMID:21423176	PMID:22570490

Genomics

Comparative Map Data

Fblim1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	159,167,004 - 159,198,578 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	159,167,004 - 159,196,853 (-)	Ensembl				GRCr8
mRatBN7.2	5	153,883,945 - 153,915,524 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	153,883,960 - 153,913,757 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	156,568,849 - 156,598,883 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	158,342,136 - 158,372,165 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	158,331,314 - 158,361,338 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	160,122,466 - 160,158,921 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	160,122,425 - 160,158,386 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	163,841,377 - 163,867,441 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	160,468,558 - 160,495,015 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	152,241,216 - 152,267,207 (-)	NCBI		Celera
RGSC_v3.1	5	160,478,745 - 160,505,203 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

FBLIM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	15,756,638 - 15,786,589 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	15,756,604 - 15,786,594 (+)	Ensembl			hg38	GRCh38
GRCh37	1	16,083,133 - 16,113,084 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	15,957,842 - 15,985,671 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	14,568,272 - 14,596,101 (+)	NCBI		Celera
Cytogenetic Map	1	p36.21	NCBI
HuRef	1	14,604,147 - 14,633,154 (+)	NCBI		HuRef
CHM1_1	1	15,883,844 - 15,911,675 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	15,201,378 - 15,231,333 (+)	NCBI		T2T-CHM13v2.0

Fblim1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	141,303,373 - 141,333,351 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	141,303,373 - 141,333,407 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	141,576,062 - 141,606,052 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	141,576,062 - 141,606,096 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	141,131,977 - 141,161,967 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	140,849,005 - 140,868,028 (-)	NCBI		MGSCv36	mm8
Celera	4	143,398,852 - 143,428,836 (-)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	74.64	NCBI

Fblim1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955527	2,400,218 - 2,415,051 (-)	Ensembl
ChiLan1.0	NW_004955527	2,399,804 - 2,418,160 (-)	NCBI	ChiLan1.0	ChiLan1.0

FBLIM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	211,129,565 - 211,159,464 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	210,378,150 - 210,408,064 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	14,898,987 - 14,928,887 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	15,890,592 - 15,921,557 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	15,890,600 - 15,921,558 (+)	Ensembl			panPan2	panpan1.1

FBLIM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	81,820,129 - 81,837,617 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	81,821,291 - 81,838,306 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	78,358,519 - 78,382,681 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	82,468,984 - 82,493,387 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	82,468,997 - 82,491,099 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	79,222,455 - 79,246,609 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	80,240,491 - 80,264,810 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	81,306,542 - 81,330,706 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Fblim1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	37,559,213 - 37,575,078 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	3,384,043 - 3,398,907 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	3,386,279 - 3,398,880 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FBLIM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	74,929,932 - 74,966,942 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	74,929,830 - 74,964,166 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	69,342,884 - 69,375,270 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FBLIM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	116,518,768 - 116,545,907 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	116,518,679 - 116,546,280 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	20,052,373 - 20,081,897 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fblim1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	16,546,267 - 16,574,574 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Fblim1
107 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	44
Count of miRNA genes:	38
Interacting mature miRNAs:	44
Transcripts:	ENSRNOT00000045237
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	156396728	172190305	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	149805999	162987697	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	156396728	167181764	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298090	Bp155	Blood pressure QTL 155	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	156289283	171137955	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat

Markers in Region

BE116703

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	153,887,111 - 153,887,281 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	160,125,629 - 160,125,798	NCBI	Rnor6.0
Rnor_5.0	5	163,844,539 - 163,844,708	UniSTS	Rnor5.0
RGSC_v3.4	5	160,471,721 - 160,471,890	UniSTS	RGSC3.4
Celera	5	152,244,425 - 152,244,594	UniSTS
RH 3.4 Map	5	1051.8	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
22	12	82	171	91	90	59	74	59	6	397	194	17	149	114	123	31	23	23

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC086398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000045237 ⟹ ENSRNOP00000040868

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	159,167,004 - 159,196,853 (-)	Ensembl
mRatBN7.2 Ensembl	5	153,883,960 - 153,910,213 (-)	Ensembl
Rnor_6.0 Ensembl	5	160,122,467 - 160,156,209 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089345 ⟹ ENSRNOP00000074912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	159,167,004 - 159,196,816 (-)	Ensembl
mRatBN7.2 Ensembl	5	153,883,960 - 153,913,757 (-)	Ensembl
Rnor_6.0 Ensembl	5	160,122,425 - 160,158,386 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000133282 ⟹ ENSRNOP00000099565

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	159,167,004 - 159,196,686 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000148404 ⟹ ENSRNOP00000102131

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	159,167,004 - 159,195,698 (-)	Ensembl

RefSeq Acc Id:

NM_001007554 ⟹ NP_001007555

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,167,004 - 159,196,816 (-)	NCBI
mRatBN7.2	5	153,883,945 - 153,913,766 (-)	NCBI
Rnor_6.0	5	160,122,467 - 160,156,209 (-)	NCBI
Rnor_5.0	5	163,841,377 - 163,867,441 (-)	NCBI
RGSC_v3.4	5	160,468,558 - 160,495,015 (-)	RGD
Celera	5	152,241,216 - 152,267,207 (-)	RGD

Sequence:

show sequence

GGCGCAGCGCCGGCCGAGGCCGGGGAATGGGGCGCGCGGCAGTGGAGCTGGCCTGAACTTTGGA
CCTTGCCTTCCAGTAGGAATCAGTATCTCAGCCCCACAGGAGCTGATCATGGCCTCCAAGCAAG
AGAAGAGGGTGGCCTCCTCTGTCTTCATCACCCTGGCCCCCCCACGCAGAGATGTGGCAGTGAC
TGAGGAAGTGACCCAGGCAGTTTGTGAAGCCCGACGTGCTCGACCCTGGGAGACCCTTCCCACA
AAGACACCTGGGGCTGCAGTGGGCAGGAGCCCCAAGACCTGGACGCCCTCTGGCAGGACCACTG
CCTCACTCCCTGAAGTCCCACCTCAGCTCTCCAATGGAGGATGCTCTCTCCCACCTCCTCCCCT
GAATGAGGAGGACTTAGACCTCCTCCCGCCTCCTCCACCACCCCCTTCTGCCTACCTGCCTCTC
CCAGAAGAGGAGCCTCCTGTCGTGCCCGGATCATCGCTCATTTCTGACTTGGAGCAACTGCACC
TGCCCCCACCCCCACCTCCACCCCTGCTACAGGCTCCATCAAAGGGATCTTCGGTCCAGCCTCA
GCCTGTTCAGGTCAGGCCCTCGGAAGAGGAGCTTCCTCCCCCTCCAGAAGAGCCTGTTACTCTT
CCAGAGAGAGAAGCATCCACAGATGTCTGTGGTTTCTGTCACAAGCCCGTGTCCCCTCGAGAGC
TGGCTGTCGAGGCCATGAAGAGGCAGTACCATGCCCAGTGCTTCACCTGTCGTACCTGCCGCCG
CCAGTTGGCTGGACAGAGATTCTACCAGAAAGATGGACGTCCCCTGTGCGAACCTTGCTACCAG
GATACTCTGGAGAAGTGTGGCAAGTGTGGAGAGGTAGTCCAAGAGCATGTCATCCGGGCCCTTG
GCAAGGCCTTCCACCCACCCTGCTTCACCTGCGTGACCTGTGCCCGGTGCATCAGCGATGAGAG
CTTCGCGCTGGACAACCAGAACCAGGTGTACTGTGTGACTGACTTCTACAGGAAATTTGCCCCT
GTGTGCAGCATCTGTGAGAATCCCATCATCCCCCGAGACGGGAAGGACGCCTTCAAAATCGAGT
GCATGGGAAGGAATTTCCATGAAAACTGTTACCGTTGTGAGCCCTCACTTCAGCTCTTCAGCTA
GGCTGCTCAAAACCACTGCCTCTGTGAGGCCACACCTAGAACATTCTTCCTTTTGATGACTCAG
CTGGTCATCAAAGAGGCCCTTGACTCCAAGTCTGATGACCCGAGTTCCATCTCTGGGACCCACA
AGGAAGGAGAGAACGAACTCCCACAAGCTGTCCTCTGGTTTACACCTGCACACCAAGATACACA
TCTGTGCACACACATCTAATAGAGATAAAATGTAAAGTAGAAAAAAATCACGTTTGTGCTTTGT
AACTTCTGAGGTGCACGTAGAAAAATTAAACCTATTTTCCTGGCTAAAAAAAAAAAAAAAAAAA
AAA

hide sequence

RefSeq Acc Id:

NM_001399241 ⟹ NP_001386170

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,167,004 - 159,196,816 (-)	NCBI
mRatBN7.2	5	153,883,945 - 153,913,766 (-)	NCBI

RefSeq Acc Id:

NM_001399242 ⟹ NP_001386171

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,167,007 - 159,196,816 (-)	NCBI
mRatBN7.2	5	153,883,948 - 153,913,766 (-)	NCBI

RefSeq Acc Id:

XM_008764273 ⟹ XP_008762495

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,167,007 - 159,195,612 (-)	NCBI
mRatBN7.2	5	153,883,946 - 153,912,558 (-)	NCBI
Rnor_6.0	5	160,122,466 - 160,155,015 (-)	NCBI

Sequence:

show sequence

CTTAGAAACGACTCGAAGGGGGTCTAGAGGGCGGGCAAAGAGTTATCCAGGCCGCTTGCACATC
CCCTCCCAGGGGCTGCAGCCTAAGGCCGGCCCTGGCTGGCTGGCCGGCTCTCAGCCTCCTTCCT
TCCTCTTGACAGGAAATGACTTTCTTTCCCTTTGTTCCCACTTTCTCCGCTTACCCAACTGGAT
CTGGGTGTCTGATTTGCCCTCCGGGGGAGGAAGGATGGGGGTGGAGGGTCTGCTGGGAAGTTGT
CATACAATGCTCCCACACCCCACACCCCACCCCACCCCCGCCTGGGTGAACTCAGGGGCAGTGG
GACCTAAGGGAAGCGCCAGCAGGCTCTCTTTATGAGACCCGACAAGGCTTTGAAAATCCCCAGC
GCTGCTCCATCCCCGAGGTCCTCACCGCTGCCTGACGACGTAAAGGGCGAGCATGGATGCCCAG
CTGCGAACATCTGGCCTCCACGCTGGATGTTTCCGAGAAAGCAGGCAGAATGGAATGGGGGTCA
GAGTAGGGGGAGAGGAGGTGGAGGAGGGTTCCTGAAGAGCCACAGCCTGTCTCAGAGGACCCGC
CTAGAATGTGTTGACCGCAAGAAATTGGTTTGGATTGGGTTATTTGGGGGAAGGGGTGGAGCTT
GGAGTGGGGGAGGAGGCTTGTATGGTCCAGGGAAGAAAAAGTCCAAGGATGCCCCCAGGACTCC
CAGGTTGCTGGATTCTCTGAAAGGATTCCAAGCCTGCTGGAGGGCCAAGGAAACATACTTCGAA
CTCTTGTTGGGACCGCGTGACAGAGGCTCCCTACAGCTGAGTGGAGCTGGCCTGAACTTTGGAC
CTTGCCTTCCAGTAGGAATCAGTATCTCAGCCCCACAGGAGCTGATCATGGCCTCCAAGCAAGA
GAAGAGGGTGGCCTCCTCTGTCTTCATCACCCTGGCCCCCCCACGCAGAGATGTGGCAGTGACT
GAGGAAGTGACCCAGGCAGTTTGTGAAGCCCGACGTGCTCGACCCTGGGAGACCCTTCCCACAA
AGACACCTGGGGCTGCAGTGGGCAGGAGCCCCAAGACCTGGACGCCCTCTGGCAGGACCACTGC
CTCACTCCCTGAAGTCCCACCTCAGCTCTCCAATGGAGGATGCTCTCTCCCACCTCCTCCCCTG
AATGAGGAGGACTTAGACCTCCTCCCGCCTCCTCCACCACCCCCTTCTGCCTACCTGCCTCTCC
CAGAAGAGGAGCCTCCTGTCGTGCCCGGATCATCGCTCATTTCTGACTTGGAGCAACTGCACCT
GCCCCCACCCCCACCTCCACCCCTGCTACAGGCTCCATCAAAGGGATCTTCGGTCCAGCCTCAG
CCTGTTCAGGTCAGGCCCTCGGAAGAGGAGCTTCCTCCCCCTCCAGAAGAGCCTGTTACTCTTC
CAGAGAGAGAAGCATCCACAGATGTCTGTGGTTTCTGTCACAAGCCCGTGTCCCCTCGAGAGCT
GGCTGTCGAGGCCATGAAGAGGCAGTACCATGCCCAGTGCTTCACCTGTCGTACCTGCCGCCGC
CAGTTGGCTGGACAGAGATTCTACCAGAAAGATGGACGTCCCCTGTGCGAACCTTGCTACCAGG
ATACTCTGGAGAAGTGTGGCAAGTGTGGAGAGGTAGTCCAAGAGCATGTCATCCGGGCCCTTGG
CAAGGCCTTCCACCCACCCTGCTTCACCTGCGTGACCTGTGCCCGGTGCATCAGCGATGAGAGC
TTCGCGCTGGACAACCAGAACCAGGTGTACTGTGTGACTGACTTCTACAGGAAATTTGCCCCTG
TGTGCAGCATCTGTGAGAATCCCATCATCCCCCGAGACGGGAAGGACGCCTTCAAAATCGAGTG
CATGGGAAGGAATTTCCATGAAAACTGTTACCGTTGTGAGGACTGCAGTGTCCTCCTGTCTGTG
GAGCCCACCGACCAAGGCTGCTACCCGCTGAATGACCACCTCTTCTGCAAACCTTGTCACATGA
AGCGGAGTGCTGCTGGGTGCTGCTGAAGAGTCCCGATGGCTGGCCCGCCCTTCCCTGACTTGGT
TTCCCCTCCCGACCTTTCTTGCATACGTTCCTTTTGAGCCTCACTGGGCACTAGCGCACTGCAC
TGTCCAAATGCATGGGCCTGAGACACTGGGGCATGGCCTCCTAGTACATACACAGCACCCTCCA
GACAGACTTCCAACTCCTCTCCCTCCATTGACCAGGAGGCCCCTCACCACCAGAGTGGGACCCT
GGTCCTTCCCTAGTGCTGGCCTGATGTGTTTATGGGGACAGGTCTCAGGGTGATGCCTGTGTCT
CTGACCATGGTGCTTAACTGCCTGGCAGAAGGTGCTGAGGCCTCAGCTTGGAGGGTGGAGCTGA
GTTGTGTGAAGTGCGCCATGGTGGCACACACCTTTAATCCCAGGACTTGAGAGGGTGTCTACAT
TCCCGGCTAGTCTGATCTACAGAGTGGGTTCTATTTAAATGATGCAAAACAATATTCTTTGGAT
TGGGGGGAGAGAAATCTCTTAATTTTTCTTTTCTTTTTTGGTGGGGTAAAATCACTAAATATCT
TCCCTTGGTTCGGGGGCTGCCAAGCTGGCTCAGCGGTTAAGAGCGTTTGCTCCTTTTGCAGAAG
ACCAGAGTTCATTTCCCAGACCCACCATGGAGGCTCATAAAACTACCTGTCCTGTAACTCCAGT
TCCAGGAGGTCTGGTGCCCTCTACTGGCCTCTTTGGAACCTGACTGAACATGGCGTACACACGC
ACGCACGCACACACACACCTTTAATCCCAGTACTTGGGAGGCAGAGGCAGGTGGATCTCTGCAT
TGGAAGGCAGCCAGAGCTACAACGTTTAAAAACCAAACCAAACAAAAAACCTACCTGGGTTTGG
TGGTGCATACCTATGACCCCAGTGCTTGGGAGAATTGCCAGAAGCTTGAGACCTGCTTGGTCTT
CATAGAATTCCACATCAGTCTTGGCAGCGTTCAGAGTCTCTGTCTCAGAAATAAATAAACAAAC
TATAAATACATAAGAATGTGAAGTAGTGACCACTCAGCCTCCCTGCCTCTGAAACACCTGCTGA
CTTGGAGCTGGGCTCATGGAGGAGAGGGAGGTTGATGAGCAGCCTCCTCCTGCTTCCGGACCCT
GCTGTGAGCTTTTGGAGTAGCTCACAGACTTGGATTAAGTGCCTTTGACTTGCTAGGGAACACA
TTTGGGGCTGAGCCTCTTTCCTCCAGACTTCTTCACTGTGACTGTGGCCTCAACAAGTACATAC
ATGTGTGTGGTTGTGAACACACACACACACACACCCCAGAATGAGGCCAGAGAAAGTCACATCT
CTGGCCTCCCATTTGTATCTTCCAGCCCTCACTTCAGCTCTTCAGCTAGGCTGCTCAAAACCAC
TGCCTCTGTGAGGCCACACCTAGAACATTCTTCCTTTTGATGACTCAGCTGGTCATCAAAGAGG
CCCTTGACTCCAAGTCTGATGACCCGAGTTCCATCTCTGGGACCCACAAGGAAGGAGAGAACGA
ACTCCCACAAGCTGTCCTCTGGTTTACACCTGCACACCAAGATACACATCTGTGCACACACATC
TAATAGAGATAAAATGTAAAGTAGAAAAAAATCACGTTTGTGCTTTGTAACTTCTGAGGTGCAC
GTAGAAAAATTAAACCTATTTTCCTGGCTT

hide sequence

RefSeq Acc Id:

XM_008764274 ⟹ XP_008762496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,167,007 - 159,196,827 (-)	NCBI
mRatBN7.2	5	153,883,948 - 153,913,775 (-)	NCBI
Rnor_6.0	5	160,122,466 - 160,156,190 (-)	NCBI

Sequence:

show sequence

GCCGGGGAATGGGGCGCGCGGCAGCCCCACAGGAGCTGATCATGGCCTCCAAGCAAGAGAAGAG
GGTGGCCTCCTCTGTCTTCATCACCCTGGCCCCCCCACGCAGAGATGTGGCAGTGACTGAGGAA
GTGACCCAGGCAGTTTGTGAAGCCCGACGTGCTCGACCCTGGGAGACCCTTCCCACAAAGACAC
CTGGGGCTGCAGTGGGCAGGAGCCCCAAGACCTGGACGCCCTCTGGCAGGACCACTGCCTCACT
CCCTGAAGTCCCACCTCAGCTCTCCAATGGAGGATGCTCTCTCCCACCTCCTCCCCTGAATGAG
GAGGACTTAGACCTCCTCCCGCCTCCTCCACCACCCCCTTCTGCCTACCTGCCTCTCCCAGAAG
AGGAGCCTCCTGTCGTGCCCGGATCATCGCTCATTTCTGACTTGGAGCAACTGCACCTGCCCCC
ACCCCCACCTCCACCCCTGCTACAGGCTCCATCAAAGGGATCTTCGGTCCAGCCTCAGCCTGTT
CAGGTCAGGCCCTCGGAAGAGGAGCTTCCTCCCCCTCCAGAAGAGCCTGTTACTCTTCCAGAGA
GAGAAGCATCCACAGATGTCTGTGGTTTCTGTCACAAGCCCGTGTCCCCTCGAGAGCTGGCTGT
CGAGGCCATGAAGAGGCAGTACCATGCCCAGTGCTTCACCTGTCGTACCTGCCGCCGCCAGTTG
GCTGGACAGAGATTCTACCAGAAAGATGGACGTCCCCTGTGCGAACCTTGCTACCAGGATACTC
TGGAGAAGTGTGGCAAGTGTGGAGAGGTAGTCCAAGAGCATGTCATCCGGGCCCTTGGCAAGGC
CTTCCACCCACCCTGCTTCACCTGCGTGACCTGTGCCCGGTGCATCAGCGATGAGAGCTTCGCG
CTGGACAACCAGAACCAGGTGTACTGTGTGACTGACTTCTACAGGAAATTTGCCCCTGTGTGCA
GCATCTGTGAGAATCCCATCATCCCCCGAGACGGGAAGGACGCCTTCAAAATCGAGTGCATGGG
AAGGAATTTCCATGAAAACTGTTACCGTTGTGAGGACTGCAGTGTCCTCCTGTCTGTGGAGCCC
ACCGACCAAGGCTGCTACCCGCTGAATGACCACCTCTTCTGCAAACCTTGTCACATGAAGCGGA
GTGCTGCTGGGTGCTGCTGAAGAGTCCCGATGGCTGGCCCGCCCTTCCCTGACTTGGTTTCCCC
TCCCGACCTTTCTTGCATACGTTCCTTTTGAGCCTCACTGGGCACTAGCGCACTGCACTGTCCA
AATGCATGGGCCTGAGACACTGGGGCATGGCCTCCTAGTACATACACAGCACCCTCCAGACAGA
CTTCCAACTCCTCTCCCTCCATTGACCAGGAGGCCCCTCACCACCAGAGTGGGACCCTGGTCCT
TCCCTAGTGCTGGCCTGATGTGTTTATGGGGACAGGTCTCAGGGTGATGCCTGTGTCTCTGACC
ATGGTGCTTAACTGCCTGGCAGAAGGTGCTGAGGCCTCAGCTTGGAGGGTGGAGCTGAGTTGTG
TGAAGTGCGCCATGGTGGCACACACCTTTAATCCCAGGACTTGAGAGGGTGTCTACATTCCCGG
CTAGTCTGATCTACAGAGTGGGTTCTATTTAAATGATGCAAAACAATATTCTTTGGATTGGGGG
GAGAGAAATCTCTTAATTTTTCTTTTCTTTTTTGGTGGGGTAAAATCACTAAATATCTTCCCTT
GGTTCGGGGGCTGCCAAGCTGGCTCAGCGGTTAAGAGCGTTTGCTCCTTTTGCAGAAGACCAGA
GTTCATTTCCCAGACCCACCATGGAGGCTCATAAAACTACCTGTCCTGTAACTCCAGTTCCAGG
AGGTCTGGTGCCCTCTACTGGCCTCTTTGGAACCTGACTGAACATGGCGTACACACGCACGCAC
GCACACACACACCTTTAATCCCAGTACTTGGGAGGCAGAGGCAGGTGGATCTCTGCATTGGAAG
GCAGCCAGAGCTACAACGTTTAAAAACCAAACCAAACAAAAAACCTACCTGGGTTTGGTGGTGC
ATACCTATGACCCCAGTGCTTGGGAGAATTGCCAGAAGCTTGAGACCTGCTTGGTCTTCATAGA
ATTCCACATCAGTCTTGGCAGCGTTCAGAGTCTCTGTCTCAGAAATAAATAAACAAACTATAAA
TACATAAGAATGTGAAGTAGTGACCACTCAGCCTCCCTGCCTCTGAAACACCTGCTGACTTGGA
GCTGGGCTCATGGAGGAGAGGGAGGTTGATGAGCAGCCTCCTCCTGCTTCCGGACCCTGCTGTG
AGCTTTTGGAGTAGCTCACAGACTTGGATTAAGTGCCTTTGACTTGCTAGGGAACACATTTGGG
GCTGAGCCTCTTTCCTCCAGACTTCTTCACTGTGACTGTGGCCTCAACAAGTACATACATGTGT
GTGGTTGTGAACACACACACACACACACCCCAGAATGAGGCCAGAGAAAGTCACATCTCTGGCC
TCCCATTTGTATCTTCCAGCCCTCACTTCAGCTCTTCAGCTAGGCTGCTCAAAACCACTGCCTC
TGTGAGGCCACACCTAGAACATTCTTCCTTTTGATGACTCAGCTGGTCATCAAAGAGGCCCTTG
ACTCCAAGTCTGATGACCCGAGTTCCATCTCTGGGACCCACAAGGAAGGAGAGAACGAACTCCC
ACAAGCTGTCCTCTGGTTTACACCTGCACACCAAGATACACATCTGTGCACACACATCTAATAG
AGATAAAATGTAAAGTAGAAAAAAATCACGTTTGTGCTTTGTAACTTCTGAGGTGCACGTAGAA
AAATTAAACCTATTTTCCTGGCTT

hide sequence

RefSeq Acc Id:

XM_008764276 ⟹ XP_008762498

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,167,007 - 159,198,578 (-)	NCBI
mRatBN7.2	5	153,883,946 - 153,915,512 (-)	NCBI
Rnor_6.0	5	160,122,466 - 160,158,921 (-)	NCBI

Sequence:

show sequence

TGCCCTATTTTTGTCTTCACCCCCCACACCATTTGTGTCTCTGCTCGGTCCTAGTATACCCCAT
CCATAATCTCCCCATCTAGACAAGGATTAATGGTTAGACTTGGTTCCTATTGGCTCCCGACTGA
CTCTCCCTCCCAAGTCGCCAGCGCCCAGACCATGTTTACAGGGTCCCAAACCCACCACTGTGGA
CAGCGATCAGGCTATACTTCCCAACAGAGTCTGAACAGCAGCCAATGTCACCCACTGCCCGAAT
CTTGTCCCTAAGCCCTTCTCCGTCTGCCTGCAGGACTCAGCCATCATGGCCCTAGTAGAGGACT
CTCTCCTTGTCTACTGGGACTTCTGAGGAGGGAAGAGAGCTGGTCTGAGCTTGGCAGGGAGGGA
GGAGGGAAGCAGAACCTATGAGAAGGCAGACAGAGGGCGTGTCTTCTCTGCCAGCACATTTCCT
GGGTTTCCATTGCAGGAAGTTTGGCACCTGCCTATCGGTGCCACTGATATCCAGGCTGGCGCAG
GCGACTTTGAGCTAGGACAATACCCCAACTGGAAGCAGCAGCAGGAGGTGGCACAGAGGCCAGG
GGTGCAGGACAGCCGTGGAGCTGGCCTGAACTTTGGACCTTGCCTTCCAGTAGGAATCAGTATC
TCAGCCCCACAGGAGCTGATCATGGCCTCCAAGCAAGAGAAGAGGGTGGCCTCCTCTGTCTTCA
TCACCCTGGCCCCCCCACGCAGAGATGTGGCAGTGACTGAGGAAGTGACCCAGGCAGTTTGTGA
AGCCCGACGTGCTCGACCCTGGGAGACCCTTCCCACAAAGACACCTGGGGCTGCAGTGGGCAGG
AGCCCCAAGACCTGGACGCCCTCTGGCAGGACCACTGCCTCACTCCCTGAAGTCCCACCTCAGC
TCTCCAATGGAGGATGCTCTCTCCCACCTCCTCCCCTGAATGAGGAGGACTTAGACCTCCTCCC
GCCTCCTCCACCACCCCCTTCTGCCTACCTGCCTCTCCCAGAAGAGGAGCCTCCTGTCGTGCCC
GGATCATCGCTCATTTCTGACTTGGAGCAACTGCACCTGCCCCCACCCCCACCTCCACCCCTGC
TACAGGCTCCATCAAAGGGATCTTCGGTCCAGCCTCAGCCTGTTCAGGTCAGGCCCTCGGAAGA
GGAGCTTCCTCCCCCTCCAGAAGAGCCTGTTACTCTTCCAGAGAGAGAAGCATCCACAGATGTC
TGTGGTTTCTGTCACAAGCCCGTGTCCCCTCGAGAGCTGGCTGTCGAGGCCATGAAGAGGCAGT
ACCATGCCCAGTGCTTCACCTGTCGTACCTGCCGCCGCCAGTTGGCTGGACAGAGATTCTACCA
GAAAGATGGACGTCCCCTGTGCGAACCTTGCTACCAGGATACTCTGGAGAAGTGTGGCAAGTGT
GGAGAGGTAGTCCAAGAGCATGTCATCCGGGCCCTTGGCAAGGCCTTCCACCCACCCTGCTTCA
CCTGCGTGACCTGTGCCCGGTGCATCAGCGATGAGAGCTTCGCGCTGGACAACCAGAACCAGGT
GTACTGTGTGACTGACTTCTACAGGAAATTTGCCCCTGTGTGCAGCATCTGTGAGAATCCCATC
ATCCCCCGAGACGGGAAGGACGCCTTCAAAATCGAGTGCATGGGAAGGAATTTCCATGAAAACT
GTTACCGTTGTGAGGACTGCAGTGTCCTCCTGTCTGTGGAGCCCACCGACCAAGGCTGCTACCC
GCTGAATGACCACCTCTTCTGCAAACCTTGTCACATGAAGCGGAGTGCTGCTGGGTGCTGCTGA
AGAGTCCCGATGGCTGGCCCGCCCTTCCCTGACTTGGTTTCCCCTCCCGACCTTTCTTGCATAC
GTTCCTTTTGAGCCTCACTGGGCACTAGCGCACTGCACTGTCCAAATGCATGGGCCTGAGACAC
TGGGGCATGGCCTCCTAGTACATACACAGCACCCTCCAGACAGACTTCCAACTCCTCTCCCTCC
ATTGACCAGGAGGCCCCTCACCACCAGAGTGGGACCCTGGTCCTTCCCTAGTGCTGGCCTGATG
TGTTTATGGGGACAGGTCTCAGGGTGATGCCTGTGTCTCTGACCATGGTGCTTAACTGCCTGGC
AGAAGGTGCTGAGGCCTCAGCTTGGAGGGTGGAGCTGAGTTGTGTGAAGTGCGCCATGGTGGCA
CACACCTTTAATCCCAGGACTTGAGAGGGTGTCTACATTCCCGGCTAGTCTGATCTACAGAGTG
GGTTCTATTTAAATGATGCAAAACAATATTCTTTGGATTGGGGGGAGAGAAATCTCTTAATTTT
TCTTTTCTTTTTTGGTGGGGTAAAATCACTAAATATCTTCCCTTGGTTCGGGGGCTGCCAAGCT
GGCTCAGCGGTTAAGAGCGTTTGCTCCTTTTGCAGAAGACCAGAGTTCATTTCCCAGACCCACC
ATGGAGGCTCATAAAACTACCTGTCCTGTAACTCCAGTTCCAGGAGGTCTGGTGCCCTCTACTG
GCCTCTTTGGAACCTGACTGAACATGGCGTACACACGCACGCACGCACACACACACCTTTAATC
CCAGTACTTGGGAGGCAGAGGCAGGTGGATCTCTGCATTGGAAGGCAGCCAGAGCTACAACGTT
TAAAAACCAAACCAAACAAAAAACCTACCTGGGTTTGGTGGTGCATACCTATGACCCCAGTGCT
TGGGAGAATTGCCAGAAGCTTGAGACCTGCTTGGTCTTCATAGAATTCCACATCAGTCTTGGCA
GCGTTCAGAGTCTCTGTCTCAGAAATAAATAAACAAACTATAAATACATAAGAATGTGAAGTAG
TGACCACTCAGCCTCCCTGCCTCTGAAACACCTGCTGACTTGGAGCTGGGCTCATGGAGGAGAG
GGAGGTTGATGAGCAGCCTCCTCCTGCTTCCGGACCCTGCTGTGAGCTTTTGGAGTAGCTCACA
GACTTGGATTAAGTGCCTTTGACTTGCTAGGGAACACATTTGGGGCTGAGCCTCTTTCCTCCAG
ACTTCTTCACTGTGACTGTGGCCTCAACAAGTACATACATGTGTGTGGTTGTGAACACACACAC
ACACACACCCCAGAATGAGGCCAGAGAAAGTCACATCTCTGGCCTCCCATTTGTATCTTCCAGC
CCTCACTTCAGCTCTTCAGCTAGGCTGCTCAAAACCACTGCCTCTGTGAGGCCACACCTAGAAC
ATTCTTCCTTTTGATGACTCAGCTGGTCATCAAAGAGGCCCTTGACTCCAAGTCTGATGACCCG
AGTTCCATCTCTGGGACCCACAAGGAAGGAGAGAACGAACTCCCACAAGCTGTCCTCTGGTTTA
CACCTGCACACCAAGATACACATCTGTGCACACACATCTAATAGAGATAAAATGTAAAGTAGAA
AAAAATCACGTTTGTGCTTTGTAACTTCTGAGGTGCACGTAGAAAAATTAAACCTATTTTCCTG
GCTT

hide sequence

RefSeq Acc Id:

XM_039110428 ⟹ XP_038966356

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,167,007 - 159,196,602 (-)	NCBI
mRatBN7.2	5	153,883,946 - 153,913,616 (-)	NCBI

RefSeq Acc Id:

XM_039110429 ⟹ XP_038966357

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,167,007 - 159,196,936 (-)	NCBI
mRatBN7.2	5	153,883,946 - 153,913,886 (-)	NCBI

RefSeq Acc Id:

XM_039110430 ⟹ XP_038966358

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	159,167,007 - 159,198,573 (-)	NCBI
mRatBN7.2	5	153,883,948 - 153,915,524 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001007555	(Get FASTA)	NCBI Sequence Viewer
	NP_001386170	(Get FASTA)	NCBI Sequence Viewer
	NP_001386171	(Get FASTA)	NCBI Sequence Viewer
	XP_008762495	(Get FASTA)	NCBI Sequence Viewer
	XP_008762496	(Get FASTA)	NCBI Sequence Viewer
	XP_008762498	(Get FASTA)	NCBI Sequence Viewer
	XP_038966356	(Get FASTA)	NCBI Sequence Viewer
	XP_038966357	(Get FASTA)	NCBI Sequence Viewer
	XP_038966358	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86398	(Get FASTA)	NCBI Sequence Viewer
	EDL80994	(Get FASTA)	NCBI Sequence Viewer
	EDL80995	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000040868
	ENSRNOP00000040868.4
	ENSRNOP00000074912
	ENSRNOP00000074912.1
	ENSRNOP00000099565
	ENSRNOP00000099565.1
	ENSRNOP00000102131
	ENSRNOP00000102131.1
GenBank Protein	F1LQ48	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001007555 ⟸ NM_001007554
- Peptide Label:	isoform 2
- UniProtKB:	Q5U1Y3 (UniProtKB/TrEMBL), F7FP13 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASKQEKRVASSVFITLAPPRRDVAVTEEVTQAVCEARRARPWETLPTKTPGAAVGRSPKTWTP SGRTTASLPEVPPQLSNGGCSLPPPPLNEEDLDLLPPPPPPPSAYLPLPEEEPPVVPGSSLISD LEQLHLPPPPPPPLLQAPSKGSSVQPQPVQVRPSEEELPPPPEEPVTLPEREASTDVCGFCHKP VSPRELAVEAMKRQYHAQCFTCRTCRRQLAGQRFYQKDGRPLCEPCYQDTLEKCGKCGEVVQEH VIRALGKAFHPPCFTCVTCARCISDESFALDNQNQVYCVTDFYRKFAPVCSICENPIIPRDGKD AFKIECMGRNFHENCYRCEPSLQLFS hide sequence

RefSeq Acc Id:	XP_008762498 ⟸ XM_008764276
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2K995 (UniProtKB/TrEMBL), A6ITU3 (UniProtKB/TrEMBL), F7FP13 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASKQEKRVASSVFITLAPPRRDVAVTEEVTQAVCEARRARPWETLPTKTPGAAVGRSPKTWTP SGRTTASLPEVPPQLSNGGCSLPPPPLNEEDLDLLPPPPPPPSAYLPLPEEEPPVVPGSSLISD LEQLHLPPPPPPPLLQAPSKGSSVQPQPVQVRPSEEELPPPPEEPVTLPEREASTDVCGFCHKP VSPRELAVEAMKRQYHAQCFTCRTCRRQLAGQRFYQKDGRPLCEPCYQDTLEKCGKCGEVVQEH VIRALGKAFHPPCFTCVTCARCISDESFALDNQNQVYCVTDFYRKFAPVCSICENPIIPRDGKD AFKIECMGRNFHENCYRCEDCSVLLSVEPTDQGCYPLNDHLFCKPCHMKRSAAGCC hide sequence

RefSeq Acc Id:	XP_008762496 ⟸ XM_008764274
- Peptide Label:	isoform X3
- UniProtKB:	F7FP13 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRAAAPQELIMASKQEKRVASSVFITLAPPRRDVAVTEEVTQAVCEARRARPWETLPTKTPGA AVGRSPKTWTPSGRTTASLPEVPPQLSNGGCSLPPPPLNEEDLDLLPPPPPPPSAYLPLPEEEP PVVPGSSLISDLEQLHLPPPPPPPLLQAPSKGSSVQPQPVQVRPSEEELPPPPEEPVTLPEREA STDVCGFCHKPVSPRELAVEAMKRQYHAQCFTCRTCRRQLAGQRFYQKDGRPLCEPCYQDTLEK CGKCGEVVQEHVIRALGKAFHPPCFTCVTCARCISDESFALDNQNQVYCVTDFYRKFAPVCSIC ENPIIPRDGKDAFKIECMGRNFHENCYRCEDCSVLLSVEPTDQGCYPLNDHLFCKPCHMKRSAA GCC hide sequence

RefSeq Acc Id:

XP_008762495 ⟸ XM_008764273

- Peptide Label:

isoform X1

- Sequence:

show sequence

MRPDKALKIPSAAPSPRSSPLPDDVKGEHGCPAANIWPPRWMFPRKQAEWNGGQSRGRGGGGGF
LKSHSLSQRTRLECVDRKKLVWIGLFGGRGGAWSGGGGLYGPGKKKSKDAPRTPRLLDSLKGFQ
ACWRAKETYFELLLGPRDRGSLQLSGAGLNFGPCLPVGISISAPQELIMASKQEKRVASSVFIT
LAPPRRDVAVTEEVTQAVCEARRARPWETLPTKTPGAAVGRSPKTWTPSGRTTASLPEVPPQLS
NGGCSLPPPPLNEEDLDLLPPPPPPPSAYLPLPEEEPPVVPGSSLISDLEQLHLPPPPPPPLLQ
APSKGSSVQPQPVQVRPSEEELPPPPEEPVTLPEREASTDVCGFCHKPVSPRELAVEAMKRQYH
AQCFTCRTCRRQLAGQRFYQKDGRPLCEPCYQDTLEKCGKCGEVVQEHVIRALGKAFHPPCFTC
VTCARCISDESFALDNQNQVYCVTDFYRKFAPVCSICENPIIPRDGKDAFKIECMGRNFHENCY
RCEDCSVLLSVEPTDQGCYPLNDHLFCKPCHMKRSAAGCC

hide sequence

Ensembl Acc Id:

ENSRNOP00000040868 ⟸ ENSRNOT00000045237

Ensembl Acc Id:

ENSRNOP00000074912 ⟸ ENSRNOT00000089345

RefSeq Acc Id:	XP_038966357 ⟸ XM_039110429
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2K995 (UniProtKB/TrEMBL), A6ITU3 (UniProtKB/TrEMBL), F7FP13 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966356 ⟸ XM_039110428
- Peptide Label:	isoform X2
- UniProtKB:	F7FP13 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038966358 ⟸ XM_039110430
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2K995 (UniProtKB/TrEMBL), A6ITU3 (UniProtKB/TrEMBL), F7FP13 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001386170 ⟸ NM_001399241
- Peptide Label:	isoform 1
- UniProtKB:	A0A0G2K995 (UniProtKB/TrEMBL), A6ITU3 (UniProtKB/TrEMBL), F7FP13 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001386171 ⟸ NM_001399242
- Peptide Label:	isoform 1
- UniProtKB:	A0A0G2K995 (UniProtKB/TrEMBL), A6ITU3 (UniProtKB/TrEMBL), F7FP13 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000102131 ⟸ ENSRNOT00000148404

Ensembl Acc Id:

ENSRNOP00000099565 ⟸ ENSRNOT00000133282

Protein Domains

LIM zinc-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K995-F1-model_v2	AlphaFold	A0A0G2K995	1-376	view protein structure
AF-F1LQ48-F1-model_v2	AlphaFold	F1LQ48	1-623	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694228

Promoter ID:

EPDNEW_R4752

Type:

multiple initiation site

Name:

Fblim1_1

Description:

filamin binding LIM protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R4753

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	160,156,202 - 160,156,262	EPDNEW

RGD ID:

13694239

Promoter ID:

EPDNEW_R4753

Type:

initiation region

Name:

Fblim1_2

Description:

filamin binding LIM protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R4752

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	160,158,396 - 160,158,456	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359551	AgrOrtholog
BioCyc Gene	G2FUF-39338	BioCyc
Ensembl Genes	ENSRNOG00000011774	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000045237	ENTREZGENE
	ENSRNOT00000045237.5	UniProtKB/TrEMBL
	ENSRNOT00000089345	ENTREZGENE
	ENSRNOT00000089345.3	UniProtKB/TrEMBL
	ENSRNOT00000133282	ENTREZGENE
	ENSRNOT00000133282.1	UniProtKB/TrEMBL
	ENSRNOT00000148404	ENTREZGENE
	ENSRNOT00000148404.1	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7303205	IMAGE-MGC_LOAD
InterPro	Znf_LIM	UniProtKB/TrEMBL
KEGG Report	rno:362650	UniProtKB/TrEMBL
MGC_CLONE	MGC:105665	IMAGE-MGC_LOAD
NCBI Gene	362650	ENTREZGENE
PANTHER	FILAMIN-BINDING LIM PROTEIN 1	UniProtKB/TrEMBL
	ZYX102 PROTEIN	UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/TrEMBL
PhenoGen	Fblim1	PhenoGen
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011774	RatGTEx
SMART	LIM	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
UniProt	A0A0G2K995	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LDM9_RAT	UniProtKB/TrEMBL
	A0ABK0LP70_RAT	UniProtKB/TrEMBL
	A6ITU3	ENTREZGENE, UniProtKB/TrEMBL
	F1LQ48	ENTREZGENE
	F7FP13	ENTREZGENE, UniProtKB/TrEMBL
	Q5U1Y3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Fblim1	filamin binding LIM protein 1	Cal	CSX-associated LIM	Symbol and Name updated	1299863	APPROVED
2005-07-29	Cal	CSX-associated LIM			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

RGD Manual Annotations