Cenpq (centromere protein Q) - Rat Genome Database

Name: Cenpq
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Cenpq (centromere protein Q) Rattus norvegicus

Analyze

Symbol:

Cenpq

Name:

centromere protein Q

RGD ID:

1359451

Description:

Predicted to be involved in metaphase chromosome alignment and positive regulation of protein localization to kinetochore. Predicted to be located in actin cytoskeleton and nucleoplasm. Predicted to be part of inner kinetochore. Predicted to be active in nucleus. Orthologous to human CENPQ (centromere protein Q); INTERACTS WITH 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CENP-Q; centromere protein Q-like; LOC363198; similar to 2610528M18Rik protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CENPQ (centromere protein Q)	HGNC	HomoloGene, NCBI, Panther
Mus musculus (house mouse):	Cenpq (centromere protein Q)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cenpq (centromere protein Q)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CENPQ (centromere protein Q)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CENPQ (centromere protein Q)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cenpq (centromere protein Q)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CENPQ (centromere protein Q)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CENPQ (centromere protein Q)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cenpq (centromere protein Q)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CENPQ (centromere protein Q)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cenpq (centromere protein Q)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	27,454,339 - 27,469,371 (+)	NCBI		GRCr8
mRatBN7.2	9	19,957,122 - 19,972,807 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	19,957,048 - 19,972,789 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	28,528,381 - 28,544,024 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	33,602,934 - 33,618,577 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	31,911,702 - 31,926,888 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	23,352,271 - 23,368,774 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	9	22,211,293 - 22,226,466 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	15,758,645 - 15,768,747 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	16,091,441 - 16,106,217 (+)	NCBI
Celera	9	17,634,682 - 17,649,991 (+)	NCBI		Celera
Cytogenetic Map	9	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4-hydroxyphenyl retinamide (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

benzo[a]pyrene (ISO)

bisphenol A (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

cefaloridine (EXP)

chlorpyrifos (ISO)

cisplatin (ISO)

copper atom (ISO)

copper(0) (ISO)

coumestrol (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

Enterolactone (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

furan (EXP)

kojic acid (ISO)

methamphetamine (EXP)

methimazole (EXP)

methyl methanesulfonate (ISO)

oxaliplatin (EXP)

ozone (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

progesterone (ISO)

resveratrol (ISO)

SB 431542 (ISO)

senecionine (EXP)

sulfadimethoxine (EXP)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thimerosal (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

metaphase chromosome alignment (IEA,ISO,ISS)

positive regulation of protein localization to kinetochore (IEA,ISO,ISS)

Cellular Component

actin cytoskeleton (IEA,ISO)

chromosome, centromeric region (IEA)

inner kinetochore (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:25395579

Genomics

Comparative Map Data

Cenpq
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	27,454,339 - 27,469,371 (+)	NCBI		GRCr8
mRatBN7.2	9	19,957,122 - 19,972,807 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	19,957,048 - 19,972,789 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	28,528,381 - 28,544,024 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	33,602,934 - 33,618,577 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	31,911,702 - 31,926,888 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	23,352,271 - 23,368,774 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	9	22,211,293 - 22,226,466 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	15,758,645 - 15,768,747 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	16,091,441 - 16,106,217 (+)	NCBI
Celera	9	17,634,682 - 17,649,991 (+)	NCBI		Celera
Cytogenetic Map	9	q13	NCBI

CENPQ
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	49,463,370 - 49,493,107 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	49,463,370 - 49,493,107 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	49,431,083 - 49,460,820 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	49,539,055 - 49,568,779 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	49,539,054 - 49,568,779	NCBI
Celera	6	50,987,302 - 51,017,018 (+)	NCBI		Celera
Cytogenetic Map	6	p12.3	NCBI
HuRef	6	49,160,017 - 49,190,307 (+)	NCBI		HuRef
CHM1_1	6	49,434,135 - 49,463,848 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	49,305,401 - 49,335,269 (+)	NCBI		T2T-CHM13v2.0

Cenpq
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	41,231,700 - 41,247,637 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	41,233,942 - 41,245,938 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	40,920,809 - 40,934,574 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	40,923,051 - 40,935,047 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	41,060,004 - 41,071,500 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	40,386,539 - 40,398,035 (-)	NCBI		MGSCv36	mm8
Celera	17	44,336,299 - 44,347,769 (-)	NCBI		Celera
Cytogenetic Map	17	B2	NCBI
cM Map	17	19.55	NCBI

Cenpq
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955410	33,464,976 - 33,476,609 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955410	33,463,041 - 33,480,573 (-)	NCBI	ChiLan1.0	ChiLan1.0

CENPQ
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	63,954,653 - 63,983,111 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	59,819,374 - 59,848,018 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	49,040,467 - 49,069,115 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	50,302,606 - 50,331,096 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	50,302,606 - 50,331,096 (+)	Ensembl	panpan1.1		panPan2

CENPQ
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	17,339,914 - 17,355,921 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	17,340,001 - 17,355,937 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	17,239,470 - 17,256,300 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	17,835,667 - 17,852,592 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	17,836,197 - 17,852,592 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	17,355,499 - 17,372,346 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	17,460,762 - 17,477,607 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	17,590,343 - 17,607,227 (+)	NCBI		UU_Cfam_GSD_1.0

Cenpq
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	52,752,034 - 52,770,888 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	11,190,535 - 11,201,011 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	11,189,336 - 11,208,154 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CENPQ
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	43,624,832 - 43,641,028 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	43,624,734 - 43,639,907 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	50,146,201 - 50,161,345 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CENPQ
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	22,898,962 - 22,922,234 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	22,900,089 - 22,915,378 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	49,455,607 - 49,478,619 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cenpq
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624783	1,826,368 - 1,836,263 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624783	1,825,234 - 1,838,794 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cenpq
59 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70226	Eae4	Experimental allergic encephalomyelitis QTL 4			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	9	1	25661317	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	1	37999212	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	1	37999212	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	1	37999212	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	40594091	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	1	43718459	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	1	43718459	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	1254084	46254084	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	1254084	46254084	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5109826	42921101	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5109826	50109826	Rat
11353947	Bp392	Blood pressure QTL 392			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	7283252	52283252	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	7954720	22071169	Rat
9589133	Insul26	Insulin level QTL 26	17.96	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	9	8952560	53952560	Rat
7411609	Foco16	Food consumption QTL 16	25.6	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	8952560	53952560	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	13533770	42791750	Rat
724543	Cm20	Cardiac mass QTL 20	3.9		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	16961398	40594091	Rat

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001419500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC082113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000081459 ⟹ ENSRNOP00000072803

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	19,957,048 - 19,972,359 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104636 ⟹ ENSRNOP00000084774

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	19,957,048 - 19,972,789 (+)	Ensembl

RefSeq Acc Id:

NM_001014215 ⟹ NP_001014237

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	27,454,339 - 27,469,371 (+)	NCBI
mRatBN7.2	9	19,957,122 - 19,972,807 (+)	NCBI
Rnor_6.0	9	23,352,271 - 23,368,774 (+)	NCBI
Rnor_5.0	9	22,211,293 - 22,226,466 (+)	NCBI
RGSC_v3.4	9	15,758,645 - 15,768,747 (-)	RGD
Celera	9	17,634,682 - 17,649,991 (+)	RGD

Sequence:

show sequence

AGGTCCTTGACGTTGTCTCTCTTTTCCTGTTTTTTGGGCGGAGTAAACCAGACGCGCGCTCTTT
GAGTCGATGAAGAAACAGAGAAGAGTCGAAGTGCTTAAGCGGCTGACAGATCCAGAGCGGATTA
ATTTTGAGCTTCACGACTTAGTGACTATGTGTCATTGTGACTGTACTGTTTAGATCAAAATGTC
TGGTAAAGCAAATACTTCTAAGAAAAAATCTCAACGGGTGAAAAGAAATGTAAAACAAAGAGCC
GATAAAGAAGATGAGGAATTGGATTCACCAGAGAATAAGGTTGGAAACAGAGCGAAAAGAAACA
GAAGTCATGCAGGACATCTGTCCTCTAAAGAACAAACAAAATGTGTTCATCTAAAACGGGTGAA
AATATCATCCAACAAGAGAACAGCCTGGCAACCTCTTCCAAAGAATACTGAAGAGTATTTGCAA
AGTATGATGGACTCAGCAATTCTTGGAATTTTAAACAAAAACATTAAAAGAAAAGAACAAATTC
AGTATCATCTCGACCAGTTGAAGAAAAGATTTCTGCAACAGTGTGCAACACTGAAAGTCCCCCC
AGGAAAGCTCAACTATTTAAGAGATATGTCAAAGCTGCTGAAGGTGGAAAGGGAACAGGAAAGG
GCGAATGAGGAGAGCCTGGCTTCACTGCAGGAAGAAATAGACAAAATAGTAGAGACCACAGAGT
CAATGACTGAGAATATTGAAAGCCTAAAGACCAAAATTGAAATCCTAACAAATGAAGTAGAGAA
AGAAGAAGAGGAGATGAAAGAGGTATTTCACATAGATAGCAATAAAGTATTGGCTCTTCCAGAA
CTTTCTCAGAAAAGTCTTAAAGCACCTATACTTCAGAAAGAAATTTTAACACTAATTCCAAACC
AGAATGCTCTTCTGAAGGACTTGGATGTTCTTCAGAATTCAGCCCCAGGGAAGAACATGGCAGC
CTTCATTCAAGAAGCGTATATGAAACTTAATGGCTCCTAAAGAGTTGGTTTTTATTTTGGTATT
TAAGCCTTGTTCCATGTTAACTTATTGTTCATGAATTGTAAAACTTTTATCTTTTTATGACAGT
CTCTCACTCTGTTTGTAGCCTAGGCTGGCTCAACACTTACTCTTATCTCCCACTTTGGCCTTGA
ACTCACTGCAGTCCTGCCCCAGCATGGTGAGTGCTAGGATTACAGGTGTGAGTTTCACATCTGG
CCCAAAGGTGTGCAACTTACCTGTATTAATACTTCAAAGCTGATGTCTCTGCAGAACAATTACC
CTCTGTTATCTACTTTAAACTAGCCTTTGTGGGCTTATCATTAGTATCTAATGTCCTGAAAACA
TAGCAGTCACCAAATCTAGTAAATCCATAGAAAGAGAGAGATATTTCCTAAAACCATGCACTGA
GAATTATTTTCAAAAATAAAAAAAATGTCATGATGTAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001419500 ⟹ NP_001406429

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	27,454,339 - 27,469,371 (+)	NCBI
mRatBN7.2	9	19,957,122 - 19,972,807 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014237	(Get FASTA)	NCBI Sequence Viewer
	NP_001406429	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH82113	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000072803
	ENSRNOP00000072803.2
	ENSRNOP00000084774
	ENSRNOP00000084774.1
GenBank Protein	Q66H02	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001014237 ⟸ NM_001014215
- Peptide Label:	isoform 2
- UniProtKB:	Q66H02 (UniProtKB/Swiss-Prot), A0A8I5ZZW1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGKANTSKKKSQRVKRNVKQRADKEDEELDSPENKVGNRAKRNRSHAGHLSSKEQTKCVHLKR VKISSNKRTAWQPLPKNTEEYLQSMMDSAILGILNKNIKRKEQIQYHLDQLKKRFLQQCATLKV PPGKLNYLRDMSKLLKVEREQERANEESLASLQEEIDKIVETTESMTENIESLKTKIEILTNEV EKEEEEMKEVFHIDSNKVLALPELSQKSLKAPILQKEILTLIPNQNALLKDLDVLQNSAPGKNM AAFIQEAYMKLNGS hide sequence

RefSeq Acc Id:

ENSRNOP00000072803 ⟸ ENSRNOT00000081459

RefSeq Acc Id:

ENSRNOP00000084774 ⟸ ENSRNOT00000104636

RefSeq Acc Id:	NP_001406429 ⟸ NM_001419500
- Peptide Label:	isoform 1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66H02-F1-model_v2	AlphaFold	Q66H02	1-270	view protein structure
AF-A0A0G2K3W4-F1-model_v2	AlphaFold	A0A0G2K3W4	1-271	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359451	AgrOrtholog
BioCyc Gene	G2FUF-28086	BioCyc
Ensembl Genes	ENSRNOG00000056226	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000081459	ENTREZGENE
	ENSRNOT00000081459.2	UniProtKB/TrEMBL
	ENSRNOT00000104636	ENTREZGENE
	ENSRNOT00000104636.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7135459	IMAGE-MGC_LOAD
InterPro	CAD_CENP-Q	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:363198	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:95330	IMAGE-MGC_LOAD
NCBI Gene	363198	ENTREZGENE
PANTHER	CENTROMERE PROTEIN Q	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR31345	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	CENP-Q	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cenpq	PhenoGen
RatGTEx	ENSRNOG00000056226	RatGTEx
UniProt	A0A0G2K3W4_RAT	UniProtKB/TrEMBL
	A0A8I5ZZW1	ENTREZGENE, UniProtKB/TrEMBL
	CENPQ_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-24	Cenpq	centromere protein Q	LOC100361893	centromere protein Q-like	Data merged from RGD:2319285	1643240	APPROVED
2010-05-05	LOC100361893	centromere protein Q-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-03-05	Cenpq	centromere protein Q	LOC363198	similar to 2610528M18Rik protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-29	LOC363198	similar to 2610528M18Rik protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar