Zfp157 (zinc finger protein 157) - Rat Genome Database

Name: Zfp157
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Zfp157 (zinc finger protein 157) Rattus norvegicus

Analyze

Symbol:

Zfp157

Name:

zinc finger protein 157

RGD ID:

1359435

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within lung alveolus development; mammary gland morphogenesis; and regulation of cell fate commitment. Predicted to be active in nucleus. Orthologous to human ZNF157 (zinc finger protein 157); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

AZ61; LOC360775; RGD1359435; similar to zinc finger protein 11b (KOX 2); zinc finger protein 6

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	21,356,253 - 21,393,006 (-)	NCBI		GRCr8
mRatBN7.2	12	16,248,230 - 16,279,459 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	16,248,230 - 16,270,698 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	17,065,331 - 17,087,020 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	17,689,048 - 17,710,741 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	16,752,195 - 16,774,141 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	18,461,283 - 18,495,871 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	18,464,781 - 18,487,178 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	20,445,869 - 20,480,542 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	16,757,409 - 16,780,022 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	16,789,748 - 16,789,877 (-)	NCBI
Celera	12	17,998,600 - 18,020,578 (-)	NCBI		Celera
Cytogenetic Map	12	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

congenital disorder of glycosylation type IIm (ISO)

genetic disease (ISO)

immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ISO)

neurodegeneration with brain iron accumulation 5 (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

X-linked epilepsy with variable learning disabilities and behavior disorders (ISO)

X-linked severe congenital neutropenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,2',5,5'-tetrachlorobiphenyl (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

ammonium chloride (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

chlorpyrifos (ISO)

DDT (EXP)

dexamethasone (ISO)

dibutyl phthalate (EXP)

epoxiconazole (ISO)

gentamycin (EXP)

indometacin (ISO)

methidathion (ISO)

methimazole (EXP)

niclosamide (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

phenethyl isothiocyanate (EXP)

phenobarbital (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

thioacetamide (EXP)

triadimefon (EXP)

trovafloxacin (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

lung alveolus development (ISO)

mammary gland morphogenesis (ISO)

regulation of cell fate commitment (ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleoplasm (IEA)

nucleus (IBA)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IEA)

metal ion binding (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Identification and characterization of zinc finger encoding genes from the tumoral exocrine pancreatic cell line AR42J.	Mesa K, etal., Cancer Lett 1996 Jun 5;103(2):143-9.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:22588720

Genomics

Comparative Map Data

Zfp157
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	21,356,253 - 21,393,006 (-)	NCBI		GRCr8
mRatBN7.2	12	16,248,230 - 16,279,459 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	16,248,230 - 16,270,698 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	17,065,331 - 17,087,020 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	17,689,048 - 17,710,741 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	16,752,195 - 16,774,141 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	18,461,283 - 18,495,871 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	18,464,781 - 18,487,178 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	20,445,869 - 20,480,542 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	16,757,409 - 16,780,022 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	16,789,748 - 16,789,877 (-)	NCBI
Celera	12	17,998,600 - 18,020,578 (-)	NCBI		Celera
Cytogenetic Map	12	q11	NCBI

ZNF157
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	47,370,578 - 47,414,498 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	47,370,578 - 47,414,498 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	47,229,977 - 47,273,897 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	47,114,943 - 47,158,042 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	46,986,235 - 47,029,648	NCBI
Celera	X	51,425,250 - 51,468,358 (+)	NCBI		Celera
Cytogenetic Map	X	p11.3	NCBI
HuRef	X	44,943,943 - 44,986,715 (+)	NCBI		HuRef
CHM1_1	X	47,261,088 - 47,304,238 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	46,780,444 - 46,824,376 (+)	NCBI		T2T-CHM13v2.0

Zfp157
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	138,439,721 - 138,459,162 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	138,439,730 - 138,458,956 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	138,441,458 - 138,460,900 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	138,441,468 - 138,460,694 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	138,882,704 - 138,901,922 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	138,671,292 - 138,690,482 (+)	NCBI		MGSCv36	mm8
Celera	5	135,511,261 - 135,530,356 (+)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	77.09	NCBI

Znf157
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955516	692,871 - 727,103 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955516	692,871 - 727,103 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZNF157
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	48,993,293 - 49,050,862 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	48,996,701 - 49,054,234 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	39,802,953 - 39,852,227 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	47,699,708 - 47,746,867 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	47,699,782 - 47,746,867 (+)	Ensembl	panpan1.1		panPan2

ZNF157
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	40,952,543 - 41,005,828 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	40,952,636 - 41,005,133 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	15,327,986 - 15,380,937 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	41,087,239 - 41,140,157 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	41,087,749 - 41,138,870 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	41,074,620 - 41,127,707 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	41,062,193 - 41,115,385 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	41,155,545 - 41,208,714 (+)	NCBI		UU_Cfam_GSD_1.0

Znf157
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	33,286,497 - 33,317,775 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936502	13,127,563 - 13,158,962 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936502	13,127,503 - 13,158,443 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF157
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	41,905,226 - 41,920,880 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	41,905,319 - 41,921,484 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	46,689,849 - 46,707,293 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF157
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	44,541,118 - 44,590,740 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666076	9,794,343 - 9,842,867 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf157
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624887	4,117,635 - 4,149,416 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624887	4,117,433 - 4,149,442 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Zfp157
136 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	425
Count of miRNA genes:	244
Interacting mature miRNAs:	293
Transcripts:	ENSRNOT00000030757
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	1	19611090	Rat
10755457	Coatc14	Coat color QTL 14		0.01759	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	12	1	22591684	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	23297788	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	1	29333307	Rat
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	34851688	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
1600391	Edcs2	Endometrial carcinoma susceptibility QTL2	3.5	0.01	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	12	6833190	17870186	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	8449490	28302290	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	8525423	28064601	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	9318216	32103380	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	9603277	46669029	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	10474137	46669029	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	10474137	46669029	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	11073825	24234895	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	28064557	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	45055165	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	12351619	46669029	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	12812385	46669029	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	12812385	46669029	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	13008296	19212979	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	13182736	46669029	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	13182736	46669029	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	13198157	46669029	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	13635523	30827399	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	13635523	35682913	Rat
61443	Btemp2	Thermal response to stress QTL 2	3.3	0.000094	body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	12	15025183	20794014	Rat
631543	Bp83	Blood pressure QTL 83	5.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	15550826	38478808	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	15872653	32974238	Rat

Markers in Region

BE108699

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	16,249,456 - 16,249,606 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	18,466,008 - 18,466,157	NCBI	Rnor6.0
Rnor_5.0	12	20,450,594 - 20,450,743	UniSTS	Rnor5.0
RGSC_v3.4	12	16,758,636 - 16,758,785	UniSTS	RGSC3.4
Celera	12	17,999,827 - 17,999,976	UniSTS
RH 3.4 Map	12	254.5	UniSTS
Cytogenetic Map	12	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		6	17	4	16	4	1	1	74	26	38	9	1
Low	3	37	40	37	3	37	7	10		9	3	2	7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001170404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039089575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271474	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	FM039106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U78117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000030757 ⟹ ENSRNOP00000036664

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	16,248,230 - 16,270,698 (-)	Ensembl
Rnor_6.0 Ensembl	12	18,464,781 - 18,487,178 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117344 ⟹ ENSRNOP00000093142

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	16,248,230 - 16,267,548 (-)	Ensembl

RefSeq Acc Id:

NM_001170404 ⟹ NP_001163875

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	21,362,004 - 21,384,470 (-)	NCBI
mRatBN7.2	12	16,248,230 - 16,270,698 (-)	NCBI
Rnor_6.0	12	18,464,781 - 18,487,178 (-)	NCBI
Rnor_5.0	12	20,445,869 - 20,480,542 (-)	NCBI
RGSC_v3.4	12	16,757,409 - 16,780,022 (-)	RGD
Celera	12	17,998,600 - 18,020,578 (-)	RGD

Sequence:

show sequence

CGCTTTCTTCTCCCATCTCTAAGTTCTGGATTGCACCCGGTATCTGTCGCCGCGTGACTCCCTA
CTGTCTGGACGCCCAGCAGGAGGCGGGCGCTCACTGGAGTCCCGAAATGGGATTGGTGTCATTT
GAGGACGTAGCCGTGGACTTCACTTGGCAGGAATGGCAGGAGCTGGATGCTGCCCAGAGGACCC
TCTACAGGGATGTGATGCTGGAGAACTACAGCAGCCTGGTGTCCTTGGGGCACTGTGTAACCAA
ACCGGAGTTGATCTTGAGGTTGGAGCATGGATTCCGGCCATGGAGCATCGGAGGAGACGCTTCT
GTCTGGAGTCTCCCAGGTGTTCTTGAAGTGTATACTCCAGATGAGAGTTGCCTGGAAAATCCAG
AGAGTCATATGTGGCCAGTGGGAAGCATCAGCAGAAATCTTTCAAATAAAGAGATGATTGAAGC
AGAAATGAAGGTTCAACTGGAACTTTACCGAGGTACAAAACCCTGTGAATGTAAACCGTGTATG
AAAATGGTTAGCCTGCCATTGCAGCGCAACGAGCAGCATGCCTACTATGCACGCGTGAAACCCT
ACGAATGGAAGGAGTGTCAGAAAGCCTTCTGTTACAAGTCAGCGCTAACTCAGCACCAGAGACC
TCGTACAAGATTGAAGATCTATCAGTGTACAGAATGCAGGAAAGCGTTCCCCTCCAAGTCAGAA
CTCACTGTGCATCATAGAATTCATACTGGTGAGAAGCCCCATGAATGTGACGAATGTGGTAAAG
CTTTCTATCGTAAGTCAACCCTTACCGTACATCAGAAGACTCATAGAGGTGAGAAACCTTATGA
ATGTAAGGAGTGTTGCAAAGCTTTCTATTATAAGTCAACCCTCACTGAACATCAGCGAATTCAT
ACCGGCGAGAAGCCTTATGTGTGTAAAGAGTGTGGCAAAGCTTTCTTCTACAAGTCAAACTTAA
CTCGCCATCATAGAACTCACACAGGTGAGAAGCCTTATGAATGTGAAGAGTGCAGGAAAGGTTT
TTCCTCCAAGTCAGAGCTCACTTCACATCATAGAACTCATACCGGTGAGAAGCCCTATCAGTGT
GAAGAGTGTGGTAAAGCTTTTTACTGCAAGTCAACCCTCCGTGTACACCAAAAAATACATACAG
GCGAAAAGCCTTATGAGTGTAAGGAATGTCAGAAATCTTTCTATTATAAGTCAACTCTTACTGA
ACATCAGAGAACTCATACAGGCGAGAAGCCCTACGAATGTAAAGACTGTGGCAAAGCTTTCTTC
TACAAGTCACAGTTAACACGCCATCATCGAATTCATACAGGTGAGAAGCCTTATGAATGTGAAG
AGTGCAGGAAAGCGTTCTCCTCCAAGTCAGAGCTCACTGCTCATCATAGAACTCATACTGGTGA
GAAGCCCTATGAATGTGAAGAATGTGGCAAATGTTTCTGTCGCAAGTCACACTTAACTCTTCAC
CATAGAATCCATACAGGTGAGAAGCCCTATGAATGTAAAGATTGCAGAAAAGCTTTTTTCTGTA
AGTCAGGACTTGCCCGACATCTGGGTACTCATACACATGGTACTAATACAAAGAATAGAGAAAA
GCATTTTCCTGCAACTCAGAGCTCAGTGAATATCAGAAATGATACACAAGTTCGAAACCCAGTG
GCTATAAAGAATGAAGAAAAACACTCTACTATAAATCAGTCCTCAGTCCATATGATGGACTTCT
TAGAGTTGAGAAGTCCTATAGATGTACATAATGCAGGAAAACTTGCCTTCTTAACTCATACCTC
ATTCAATATGAACGAACTTAGGTGAGACACACAGAGAAGATTAGAAAGTGTGTAGTCAACCAGG
ATCACTTGACATCAGAGAATGCCTGTAGAAGGAATACAGCAAAGAACTGCCACAAGGGAGACCT
CTCAACATCAGAAGAACATTTTGTCTGGAAAGAATACAGGAAAGCTCTACCATAGTTGTCTCAA
TGCAAGCAACTCAAACATGGAAAGAAGCTTATGAATTAAAAGCCAAAAGTTTGAATTTATGTAA
TGAAGAACCCTGAGAATCTATAAAAATCAAAAACATTTTCCAGTGTAGACTAGTATCTATGTAC
TAACCTTGAAAAACAAACATTTAAAAGACCCTTTTAAAGAACATAGAAAAACTTTGATAAGTCA
GATCACATTCTACATCAAAAAAGTCATACAGGTGAGAGACTATGTACAAATCAATTTTTCATTC
CATTTCATTGAGACATAGATATTCAAGATTAGGGACATCATATCCTCTCCAATTCTGGGTGGGC
CTAGAGTGTTTAAGGGCATGTGTAGAAATGTGATGTTTTGAAGTGGTGTTAAGGTATCTTGGAA
ATGACTGATTCTGTATCTGGTAGGAGGTAGTGGCTTACTTTGTAGGACTGCTAAAGTCACTGGT
AATCGGTGTTTTCTGATTCTCATTTGCAAGAGAAAAATGTGGTAAATCTTCTGATAAAGTCATT
TTAATCTGACAGTCAATGGCATAGGAGGTCCAGAAATTAACAGTGGTTATTTCCTGATCTCAGA
GAAGTGACGATTGAGAATGGTAACATTTATACCAAATTAGTAGCACAGGAGAGTTCAAGGTAGT
TGGGGTTTGTACCACACTTTGCAGATACAGAAGGGAATCCAGACCAGTGCCTAAGATAACAAAC
CAAGTGAGTGTCAGAGCCAGGACCGAATATCCTATCTCCGCTCAGTGTTGCTTGCGTCAACCCT
GCACCATTTTACTTGACCAGTTTATACAGCTTCCTGTTGGTGGGTGAAGGGAGGAGAGTCTTCA
TTATCATTTTCCAACTCTGGCAGAAGAGAATCTCAATAATATTGTCATGAGGGACTGTCTTAAG
CCAAGCAATAGCCATCTCAGGGAATTCAGCTGTGTCCCCTTCCAAAAGCTCATCCCAACTGGGC
TTATTGATGGTCTCTACTCTCTTCTCCTCCCAGCATCTAACTGCTCCCTACCAACTGGCAGTTC
TGCAGACTGCCTAGGGGAAGATTTAAAGTGAGTGCCAGGGAAGACGAGGGAAGGGGTCACATCC
TCCATCTATGCTGTTTTGGGGGGGAAAATCCCATTCTTGCTGAGTAAGGCTTTCTAGTTGTGGC
CCACTAGGGGCAGTATACCGATACCCTTGTAAGTATCCTTACCAGTGCTCTGTAAGGAAGCCAA
ATAAAGTCTTTGGTTTATTTATGAA

hide sequence

RefSeq Acc Id:

XM_017598383 ⟹ XP_017453872

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	21,362,004 - 21,393,001 (-)	NCBI
mRatBN7.2	12	16,248,230 - 16,279,459 (-)	NCBI
Rnor_6.0	12	18,461,283 - 18,495,871 (-)	NCBI

Sequence:

show sequence

CTACATCAGACTCCAACTCCGGATATTGTAGCACCCCTTTTCCTACCCGTCAGGGTAGAGGTTC
CATTTCTGCAACTCGCTGGAAACTTGACTTTACCCACATGCCCAGTGTCAAACATGTCAAGTAC
CTCCTGGTCTTGGAAATTTTCTTGCAGTGGGTAGAGGCATTTCCCACCACTAACAAAAGGCTTC
ATCCCATGATTCAGTGTTCTAGTCCCCCTCCAGGCAGACAATGGTCCTGAATCCATTTCCCAAA
GTTTTCAAACTCTAGCTAAAACTCTAGACATCCCCTGGCATTTTCAAAATCCCTATCACCCCCA
GTTCTCAGGATAACCCTTACATCTGGAGATTCAAGGTTCAAAAAAACCCACACTGATAACAAAA
AGTCTTTCTACATAAGATGAAAGATGATTGTAAAATATAGCCTGACGAATATGGGGGCTGCCCA
TATTGGTCTTGCCAGATACATATGTTAGGATCATGGATCAATCGCTTCTTCTATCAACAGTGTA
AGACCCTCTTCTTCTATATACAAGACCCATGGAATCCCAGGCGGCAAACAGGAGTTATTGTTTT
CCCGCTTTACGAGCTGGCCATGCTTTGACTGACGGTGCGATCTCTAAGCTTTGTGCTCTGGCCA
CCTGCTCCTACGTCTCCTCCACCATTACAGATTCCTCCTCTGGAACTGCGAGCCGAAATAAATT
CTTCCTTCCGGATTGGTGTCATTTGAGGACGTAGCCGTGGACTTCACTTGGCAGGAATGGCAGG
AGCTGGATGCTGCCCAGAGGACCCTCTACAGGGATGTGATGCTGGAGAACTACAGCAGCCTGGT
GTCCTTGGGGCACTGTGTAACCAAACCGGAGTTGATCTTGAGGTTGGAGCATGGATTCCGGCCA
TGGAGCATCGGAGGAGACGCTTCTGTCTGGAGTCTCCCAGGTGTTCTTGAAGTGTATACTCCAG
ATGAGAGTTGCCTGGAAAATCCAGAGAGTCATATGTGGCCAGTGGGAAGCATCAGCAGAAATCT
TTCAAATAAAGAGATGATTGAAGCAGAAATGAAGGTTCAACTGGAACTTTACCGAGGTACAAAA
CCCTGTGAATGTAAACCGTGTATGAAAATGGTTAGCCTGCCATTGCAGCGCAACGAGCAGCATG
CCTACTATGCACGCGTGAAACCCTACGAATGGAAGGAGTGTCAGAAAGCCTTCTGTTACAAGTC
AGCGCTAACTCAGCACCAGAGACCTCGTACAAGATTGAAGATCTATCAGTGTACAGAATGCAGG
AAAGCGTTCCCCTCCAAGTCAGAACTCACTGTGCATCATAGAATTCATACTGGTGAGAAGCCCC
ATGAATGTGACGAATGTGGTAAAGCTTTCTATCGTAAGTCAACCCTTACCGTACATCAGAAGAC
TCATAGAGGTGAGAAACCTTATGAATGTAAGGAGTGTTGCAAAGCTTTCTATTATAAGTCAACC
CTCACTGAACATCAGCGAATTCATACCGGCGAGAAGCCTTATGTGTGTAAAGAGTGTGGCAAAG
CTTTCTTCTACAAGTCAAACTTAACTCGCCATCATAGAACTCACACAGGTGAGAAGCCTTATGA
ATGTGAAGAGTGCAGGAAAGGTTTTTCCTCCAAGTCAGAGCTCACTTCACATCATAGAACTCAT
ACCGGTGAGAAGCCCTATCAGTGTGAAGAGTGTGGTAAAGCTTTTTACTGCAAGTCAACCCTCC
GTGTACACCAAAAAATACATACAGGCGAAAAGCCTTATGAGTGTAAGGAATGTCAGAAATCTTT
CTATTATAAGTCAACTCTTACTGAACATCAGAGAACTCATACAGGCGAGAAGCCCTACGAATGT
AAAGACTGTGGCAAAGCTTTCTTCTACAAGTCACAGTTAACACGCCATCATCGAATTCATACAG
GTGAGAAGCCTTATGAATGTGAAGAGTGCAGGAAAGCGTTCTCCTCCAAGTCAGAGCTCACTGC
TCATCATAGAACTCATACTGGTGAGAAGCCCTATGAATGTGAAGAATGTGGCAAATGTTTCTGT
CGCAAGTCACACTTAACTCTTCACCATAGAATCCATACAGGTGAGAAGCCCTATGAATGTAAAG
ATTGCAGAAAAGCTTTTTTCTGTAAGTCAGGACTTGCCCGACATCTGGGTACTCATACACATGG
TACTAATACAAAGAATAGAGAAAAGCATTTTCCTGCAACTCAGAGCTCAGTGAATATCAGAAAT
GATACACAAGTTCGAAACCCAGTGGCTATAAAGAATGAAGAAAAACACTCTACTATAAATCAGT
CCTCAGTCCATATGATGGACTTCTTAGAGTTGAGAAGTCCTATAGATGTACATAATGCAGGAAA
ACTTGCCTTCTTAACTCATACCTCATTCAATATGAACGAACTTAGGTGAGACACACAGAGAAGA
TTAGAAAGTGTGTAGTCAACCAGGATCACTTGACATCAGAGAATGCCTGTAGAAGGAATACAGC
AAAGAACTGCCACAAGGGAGACCTCTCAACATCAGAAGAACATTTTGTCTGGAAAGAATACAGG
AAAGCTCTACCATAGTTGTCTCAATGCAAGCAACTCAAACATGGAAAGAAGCTTATGAATTAAA
AGCCAAAAGTTTGAATTTATGTAATGAAGAACCCTGAGAATCTATAAAAATCAAAAACATTTTC
CAGTGTAGACTAGTATCTATGTACTAACCTTGAAAAACAAACATTTAAAAGACCCTTTTAAAGA
ACATAGAAAAACTTTGATAAGTCAGATCACATTCTACATCAAAAAAGTCATACAGGTGAGAGAC
TATGTACAAATCAATTTTTCATTCCATTTCATTGAGACATAGATATTCAAGATTAGGGACATCA
TATCCTCTCCAATTCTGGGTGGGCCTAGAGTGTTTAAGGGCATGTGTAGAAATGTGATGTTTTG
AAGTGGTGTTAAGGTATCTTGGAAATGACTGATTCTGTATCTGGTAGGAGGTAGTGGCTTACTT
TGTAGGACTGCTAAAGTCACTGGTAATCGGTGTTTTCTGATTCTCATTTGCAAGAGAAAAATGT
GGTAAATCTTCTGATAAAGTCATTTTAATCTGACAGTCAATGGCATAGGAGGTCCAGAAATTAA
CAGTGGTTATTTCCTGATCTCAGAGAAGTGACGATTGAGAATGGTAACATTTATACCAAATTAG
TAGCACAGGAGAGTTCAAGGTAGTTGGGGTTTGTACCACACTTTGCAGATACAGAAGGGAATCC
AGACCAGTGCCTAAGATAACAAACCAAGTGAGTGTCAGAGCCAGGACCGAATATCCTATCTCCG
CTCAGTGTTGCTTGCGTCAACCCTGCACCATTTTACTTGACCAGTTTATACAGCTTCCTGTTGG
TGGGTGAAGGGAGGAGAGTCTTCATTATCATTTTCCAACTCTGGCAGAAGAGAATCTCAATAAT
ATTGTCATGAGGGACTGTCTTAAGCCAAGCAATAGCCATCTCAGGGAATTCAGCTGTGTCCCCT
TCCAAAAGCTCATCCCAACTGGGCTTATTGATGGTCTCTACTCTCTTCTCCTCCCAGCATCTAA
CTGCTCCCTACCAACTGGCAGTTCTGCAGACTGCCTAGGGGAAGATTTAAAGTGAGTGCCAGGG
AAGACGAGGGAAGGGGTCACATCCTCCATCTATGCTGTTTTGGGGGGGAAAATCCCATTCTTGC
TGAGTAAGGCTTTCTAGTTGTGGCCCACTAGGGGCAGTATACCGATACCCTTGTAAGTATCCTT
ACCAGTGCTCTGTAAGGAAGCCAAATAAAGTCTTTGGTTTATTTATGAACTTTGTGGAATCCTG
GCTCTCTTTGTCATTAGTACCTTAGGGGAAGAGGTAGAGATTTCTTTACACCTCCCCCTGCAAA
GGAATTTATAGCAACATGGACTCCCCATTAGGATGAATCTTAACTCAAGATGAGGCAGTAGCAT
TGAGCATCCCTATGGTAGGTTGGATCTCTAGGAAGTCAGGGTGATCTTCTTATTATCCAAATCC
AGCCTTTCTTTCCGTTTCCCTTGTTAGTTATCGATACTCCATTAGAAAGAGTAGATAATGCAAG
AAAATTTTATGCTCAGAAAATTCTACACTTAGGTCGAATTGAAGAGGTACTGATTAGAAGAAGT
TTACACAAGATATGTTAAAATATTACTATTTACTTTAATATCTTCCAAGAATCTCAGTAATCTT
CCCTGACTCAGTGTAGTGAGAAAATGAGAGGGTGACTTCTGGAAACAAGTTAATGAGTTTTTAG
TTGAGTAACCTTCTGGGCCATGAATGGGTACTGAGGTATGGGCATTTATTATCATTTCTACGAC
TGTGTTGGCACAGTGTCATTCCTTTACTTGCCACCTTTCTCACTGACCTGGTGCTTCTGGATCT
TCGTGAAGGATTATGTGGATGTGTGTAGGGAGCTGCGACGTGCCACGCCTCAAAGATGGCGCTG
GTTTCTGCCTTCCACCTTCCCAACGATTCCAGAAGAAAATGTTGGATTCCCTGGAACTAGAGTT
AATAGATGGTTGTGGGTAATATGGACACTGAGAACTGAGCCTAGGTCTTCTGCAGAAACAGCAA
GTACTCTTCACTACCGAGCCGATGCTTCAGCCCATGCCACTGGTGTTTTAGTTTGCATTTACAT
TGATTTCTCTAATTTCTAAACATATTGAGGGTAATTTATGATATTAAACACTTATATGCAATGT
A

hide sequence

RefSeq Acc Id:

XM_039089568 ⟹ XP_038945496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	21,362,004 - 21,384,080 (-)	NCBI
mRatBN7.2	12	16,248,230 - 16,270,302 (-)	NCBI

RefSeq Acc Id:

XM_039089570 ⟹ XP_038945498

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	21,362,004 - 21,393,006 (-)	NCBI
mRatBN7.2	12	16,248,230 - 16,279,459 (-)	NCBI

RefSeq Acc Id:

XM_039089571 ⟹ XP_038945499

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	21,362,004 - 21,393,001 (-)	NCBI
mRatBN7.2	12	16,248,230 - 16,279,459 (-)	NCBI

RefSeq Acc Id:

XM_039089573 ⟹ XP_038945501

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	21,362,004 - 21,393,001 (-)	NCBI
mRatBN7.2	12	16,248,230 - 16,279,459 (-)	NCBI

RefSeq Acc Id:

XM_039089574 ⟹ XP_038945502

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	21,362,004 - 21,373,382 (-)	NCBI
mRatBN7.2	12	16,248,230 - 16,259,622 (-)	NCBI

RefSeq Acc Id:

XM_039089575 ⟹ XP_038945503

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	21,362,004 - 21,384,533 (-)	NCBI
mRatBN7.2	12	16,248,230 - 16,270,762 (-)	NCBI

RefSeq Acc Id:

XM_063271473 ⟹ XP_063127543

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	21,362,004 - 21,384,527 (-)	NCBI

RefSeq Acc Id:

XM_063271474 ⟹ XP_063127544

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	21,356,253 - 21,384,541 (-)	NCBI

RefSeq Acc Id:

XR_010056404

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	21,358,506 - 21,384,080 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001163875	(Get FASTA)	NCBI Sequence Viewer
	XP_017453872	(Get FASTA)	NCBI Sequence Viewer
	XP_038945496	(Get FASTA)	NCBI Sequence Viewer
	XP_038945498	(Get FASTA)	NCBI Sequence Viewer
	XP_038945499	(Get FASTA)	NCBI Sequence Viewer
	XP_038945501	(Get FASTA)	NCBI Sequence Viewer
	XP_038945502	(Get FASTA)	NCBI Sequence Viewer
	XP_038945503	(Get FASTA)	NCBI Sequence Viewer
	XP_063127543	(Get FASTA)	NCBI Sequence Viewer
	XP_063127544	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB36789	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000036664
	ENSRNOP00000036664.4
	ENSRNOP00000093142
	ENSRNOP00000093142.1

RefSeq Acc Id:

NP_001163875 ⟸ NM_001170404

- UniProtKB:

D3ZFZ1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGLVSFEDVAVDFTWQEWQELDAAQRTLYRDVMLENYSSLVSLGHCVTKPELILRLEHGFRPWS
IGGDASVWSLPGVLEVYTPDESCLENPESHMWPVGSISRNLSNKEMIEAEMKVQLELYRGTKPC
ECKPCMKMVSLPLQRNEQHAYYARVKPYEWKECQKAFCYKSALTQHQRPRTRLKIYQCTECRKA
FPSKSELTVHHRIHTGEKPHECDECGKAFYRKSTLTVHQKTHRGEKPYECKECCKAFYYKSTLT
EHQRIHTGEKPYVCKECGKAFFYKSNLTRHHRTHTGEKPYECEECRKGFSSKSELTSHHRTHTG
EKPYQCEECGKAFYCKSTLRVHQKIHTGEKPYECKECQKSFYYKSTLTEHQRTHTGEKPYECKD
CGKAFFYKSQLTRHHRIHTGEKPYECEECRKAFSSKSELTAHHRTHTGEKPYECEECGKCFCRK
SHLTLHHRIHTGEKPYECKDCRKAFFCKSGLARHLGTHTHGTNTKNREKHFPATQSSVNIRNDT
QVRNPVAIKNEEKHSTINQSSVHMMDFLELRSPIDVHNAGKLAFLTHTSFNMNELR

hide sequence

RefSeq Acc Id:

XP_017453872 ⟸ XM_017598383

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLENYSSLVSLGHCVTKPELILRLEHGFRPWSIGGDASVWSLPGVLEVYTPDESCLENPESHMW
PVGSISRNLSNKEMIEAEMKVQLELYRGTKPCECKPCMKMVSLPLQRNEQHAYYARVKPYEWKE
CQKAFCYKSALTQHQRPRTRLKIYQCTECRKAFPSKSELTVHHRIHTGEKPHECDECGKAFYRK
STLTVHQKTHRGEKPYECKECCKAFYYKSTLTEHQRIHTGEKPYVCKECGKAFFYKSNLTRHHR
THTGEKPYECEECRKGFSSKSELTSHHRTHTGEKPYQCEECGKAFYCKSTLRVHQKIHTGEKPY
ECKECQKSFYYKSTLTEHQRTHTGEKPYECKDCGKAFFYKSQLTRHHRIHTGEKPYECEECRKA
FSSKSELTAHHRTHTGEKPYECEECGKCFCRKSHLTLHHRIHTGEKPYECKDCRKAFFCKSGLA
RHLGTHTHGTNTKNREKHFPATQSSVNIRNDTQVRNPVAIKNEEKHSTINQSSVHMMDFLELRS
PIDVHNAGKLAFLTHTSFNMNELR

hide sequence

RefSeq Acc Id:

ENSRNOP00000036664 ⟸ ENSRNOT00000030757

RefSeq Acc Id:	XP_038945498 ⟸ XM_039089570
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038945501 ⟸ XM_039089573
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038945499 ⟸ XM_039089571
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038945503 ⟸ XM_039089575
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038945496 ⟸ XM_039089568
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AIG3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038945502 ⟸ XM_039089574
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSRNOP00000093142 ⟸ ENSRNOT00000117344

RefSeq Acc Id:	XP_063127544 ⟸ XM_063271474
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063127543 ⟸ XM_063271473
- Peptide Label:	isoform X2

Protein Domains

C2H2-type KRAB

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZFZ1-F1-model_v2	AlphaFold	D3ZFZ1	1-568	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698483

Promoter ID:

EPDNEW_R9007

Type:

multiple initiation site

Name:

Zfp157_1

Description:

zinc finger protein 157

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	18,487,210 - 18,487,270	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359435	AgrOrtholog
BioCyc Gene	G2FUF-19852	BioCyc
Ensembl Genes	ENSRNOG00000001323	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000030757	ENTREZGENE
	ENSRNOT00000030757.6	UniProtKB/TrEMBL
	ENSRNOT00000117344.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:360775	UniProtKB/TrEMBL
NCBI Gene	360775	ENTREZGENE
PANTHER	NOVEL KRAB BOX AND ZINC FINGER, C2H2 TYPE DOMAIN CONTAINING PROTEIN-RELATED	UniProtKB/TrEMBL
	ZINC FINGER AND BTB DOMAIN-CONTAINING	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PharmGKB	ZNF157	RGD
PhenoGen	Zfp157	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000001323	RatGTEx
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8I6AIG3	ENTREZGENE, UniProtKB/TrEMBL
	D3ZFZ1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Zfp157	zinc finger protein 157	RGD1359435	similar to zinc finger protein 11b (KOX 2)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-11-17	RGD1359435	similar to zinc finger protein 11b (KOX 2)	LOC360775		Symbol updated	1299863	APPROVED
2005-07-29	LOC360775	similar to zinc finger protein 11b (KOX 2)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar