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Gene: Desi2 (desumoylating isopeptidase 2) Rattus norvegicus

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Symbol:

Desi2

Name:

desumoylating isopeptidase 2

RGD ID:

1359392

Description:

Predicted to enable deubiquitinase activity and long-chain fatty acyl-CoA hydrolase activity. Predicted to be involved in macromolecule depalmitoylation and proteolysis. Predicted to be located in cytoplasm. Orthologous to human DESI2 (desumoylating isopeptidase 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CGI-146; DeSI-2; deubiquitinase DESI2; Fam152a; family with sequence similarity 152, member A; palmitoyl protein thioesterase DESI2; PNAS-4; PPPDE peptidase domain containing 1; PPPDE peptidase domain-containing protein 1; Pppde1; S-depalmitoylase DESI2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DESI2 (desumoylating isopeptidase 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Desi2 (desumoylating isopeptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Desi2 (desumoylating isopeptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DESI2 (desumoylating isopeptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DESI2 (desumoylating isopeptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Desi2 (desumoylating isopeptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DESI2 (desumoylating isopeptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DESI2 (desumoylating isopeptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Desi2 (desumoylating isopeptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Desi2 (desumoylating isopeptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Desi2 (desumoylating isopeptidase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	DESI2 (desumoylating isopeptidase 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	desi2 (desumoylating isopeptidase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG12231	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	F36D4.5	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F36D4.5	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7222	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	desi2l	Alliance	DIOPT (OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	desi2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	92,493,765 - 92,543,307 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	92,493,989 - 92,564,981 (+)	Ensembl				GRCr8
mRatBN7.2	13	89,961,767 - 90,011,255 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	89,961,934 - 90,016,416 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	92,467,195 - 92,510,053 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	93,867,337 - 93,910,193 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	91,048,646 - 91,091,598 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	96,111,800 - 96,156,693 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	96,111,800 - 96,154,685 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	100,553,747 - 100,599,426 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	93,895,171 - 93,903,458 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	89,520,725 - 89,563,808 (+)	NCBI		Celera
RGSC_v3.1	13	94,084,106 - 94,092,392 (+)	NCBI
Cytogenetic Map	13	q25	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ovarian Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsenous acid (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

coumestrol (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dibenz[a,h]anthracene (ISO)

diethylstilbestrol (ISO)

dorsomorphin (ISO)

elemental selenium (ISO)

finasteride (EXP)

flutamide (EXP)

furan (ISO)

glafenine (EXP)

inulin (ISO)

irinotecan (ISO)

ketoconazole (ISO)

leflunomide (EXP)

menadione (ISO)

nefazodone (EXP)

nimesulide (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propiconazole (ISO)

raloxifene (ISO)

Salinomycin (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone enanthate (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (EXP,ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

macromolecule depalmitoylation (IEA)

proteolysis (IEA)

Cellular Component

cytoplasm (IEA,ISO,ISS)

Molecular Function

cysteine-type deubiquitinase activity (IEA,ISO)

deubiquitinase activity (IBA)

hydrolase activity (IEA)

K48-linked deubiquitinase activity (IEA,ISO,ISS)

K63-linked deubiquitinase activity (IEA,ISO,ISS)

long-chain fatty acyl-CoA hydrolase activity (IEA,ISO,ISS)

palmitoyl-(protein) hydrolase activity (IEA)

peptidase activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:21553223	PMID:22370726	PMID:28483520	PMID:33794264

Genomics

Comparative Map Data

Desi2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	92,493,765 - 92,543,307 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	92,493,989 - 92,564,981 (+)	Ensembl				GRCr8
mRatBN7.2	13	89,961,767 - 90,011,255 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	89,961,934 - 90,016,416 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	92,467,195 - 92,510,053 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	93,867,337 - 93,910,193 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	91,048,646 - 91,091,598 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	96,111,800 - 96,156,693 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	96,111,800 - 96,154,685 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	100,553,747 - 100,599,426 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	93,895,171 - 93,903,458 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	89,520,725 - 89,563,808 (+)	NCBI		Celera
RGSC_v3.1	13	94,084,106 - 94,092,392 (+)	NCBI
Cytogenetic Map	13	q25	NCBI

DESI2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	244,653,126 - 244,709,033 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	244,653,091 - 244,709,033 (+)	Ensembl			hg38	GRCh38
GRCh37	1	244,816,428 - 244,872,335 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	242,882,975 - 242,938,958 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	218,106,243 - 218,162,211 (+)	NCBI		Celera
Cytogenetic Map	1	q44	NCBI
HuRef	1	215,199,549 - 215,255,506 (+)	NCBI		HuRef
CHM1_1	1	246,088,656 - 246,144,628 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	244,069,385 - 244,125,271 (+)	NCBI		T2T-CHM13v2.0

Desi2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	178,014,983 - 178,080,164 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	178,014,983 - 178,084,867 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	178,187,417 - 178,252,598 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	178,187,417 - 178,257,301 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	180,117,548 - 180,182,729 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	180,024,385 - 180,089,269 (+)	NCBI		MGSCv36	mm8
Celera	1	185,247,627 - 185,312,483 (+)	NCBI		Celera
Cytogenetic Map	1	H4	NCBI
cM Map	1	82.93	NCBI

Desi2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	7,880,648 - 7,894,629 (+)	Ensembl
ChiLan1.0	NW_004955406	7,881,815 - 7,894,690 (+)	NCBI	ChiLan1.0	ChiLan1.0

DESI2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	4,448,197 - 4,507,060 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	4,670,620 - 4,726,951 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	220,246,390 - 220,302,577 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	225,626,913 - 225,682,778 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	225,626,913 - 225,682,772 (+)	Ensembl			panPan2	panpan1.1

DESI2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	35,688,519 - 35,734,283 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	35,687,888 - 35,731,186 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	35,161,634 - 35,208,048 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	35,516,735 - 35,563,360 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	35,516,660 - 35,563,350 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	35,352,288 - 35,398,850 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	35,367,194 - 35,413,792 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	35,632,821 - 35,679,443 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Desi2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	48,566,633 - 48,617,795 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936526	6,129,500 - 6,180,668 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936526	6,130,714 - 6,180,546 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DESI2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	17,365,689 - 17,416,635 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	17,365,649 - 17,416,642 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	19,696,102 - 19,747,165 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DESI2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	81,670,135 - 81,733,696 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	81,670,170 - 81,733,812 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	83,892,549 - 83,956,201 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Desi2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	14,879,277 - 14,927,002 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624771	14,879,275 - 14,927,352 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Desi2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	56,546,922 - 56,591,376 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Desi2
192 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	213
Count of miRNA genes:	149
Interacting mature miRNAs:	165
Transcripts:	ENSRNOT00000005967
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
1302791	Stl29	Serum triglyceride level QTL 29	3.3	0.0011	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	13	89333129	92500981	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

RH133177

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	90,004,865 - 90,005,075 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	96,154,763 - 96,154,972	NCBI	Rnor6.0
Rnor_5.0	13	100,597,496 - 100,597,705	UniSTS	Rnor5.0
RGSC_v3.4	13	93,903,532 - 93,903,741	UniSTS	RGSC3.4
Celera	13	89,563,882 - 89,564,091	UniSTS
RH 3.4 Map	13	607.5	UniSTS
Cytogenetic Map	13	q25	UniSTS

RH144438

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	90,004,372 - 90,004,497 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	96,154,270 - 96,154,394	NCBI	Rnor6.0
Rnor_5.0	13	100,597,003 - 100,597,127	UniSTS	Rnor5.0
RGSC_v3.4	13	93,903,039 - 93,903,163	UniSTS	RGSC3.4
Celera	13	89,563,389 - 89,563,513	UniSTS
RH 3.4 Map	13	608.5	UniSTS
Cytogenetic Map	13	q25	UniSTS

BI293545

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	89,977,262 - 89,977,412 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	96,127,116 - 96,127,265	NCBI	Rnor6.0
Rnor_5.0	13	100,570,275 - 100,570,424	UniSTS	Rnor5.0
Celera	13	89,536,259 - 89,536,408	UniSTS
RH 3.4 Map	13	605.9	UniSTS
Cytogenetic Map	13	q25	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090530	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005967 ⟹ ENSRNOP00000005967

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,494,188 - 92,537,255 (+)	Ensembl
mRatBN7.2 Ensembl	13	89,961,934 - 90,004,788 (+)	Ensembl
Rnor_6.0 Ensembl	13	96,111,800 - 96,154,685 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087964 ⟹ ENSRNOP00000069021

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,493,989 - 92,564,981 (+)	Ensembl
mRatBN7.2 Ensembl	13	89,961,934 - 90,016,416 (+)	Ensembl
Rnor_6.0 Ensembl	13	96,122,120 - 96,153,823 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096311 ⟹ ENSRNOP00000090662

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,523,702 - 92,537,255 (+)	Ensembl
mRatBN7.2 Ensembl	13	89,991,647 - 90,004,805 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098343 ⟹ ENSRNOP00000091146

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,494,994 - 92,537,255 (+)	Ensembl
mRatBN7.2 Ensembl	13	89,971,669 - 90,004,805 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108395 ⟹ ENSRNOP00000091139

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,522,997 - 92,537,255 (+)	Ensembl
mRatBN7.2 Ensembl	13	89,990,942 - 90,004,805 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115830 ⟹ ENSRNOP00000090046

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,494,158 - 92,537,255 (+)	Ensembl
mRatBN7.2 Ensembl	13	89,962,414 - 90,004,805 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000130824 ⟹ ENSRNOP00000103188

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,494,149 - 92,535,934 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000149431 ⟹ ENSRNOP00000100406

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,523,884 - 92,548,465 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000149433 ⟹ ENSRNOP00000107831

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	92,494,140 - 92,535,934 (+)	Ensembl

RefSeq Acc Id:

NM_001013873 ⟹ NP_001013895

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,493,989 - 92,536,844 (+)	NCBI
mRatBN7.2	13	89,961,934 - 90,004,792 (+)	NCBI
Rnor_6.0	13	96,111,800 - 96,154,689 (+)	NCBI
Rnor_5.0	13	100,553,747 - 100,599,426 (+)	NCBI
RGSC_v3.4	13	93,895,171 - 93,903,458 (+)	RGD
Celera	13	89,520,725 - 89,563,808 (+)	RGD

Sequence:

show sequence

GGCACCCAACCCGCCGCCATTTTAGGTCTCGAGGTGCAGCGCCTGAGAGAGTCAGCGCGCAGGC
GGGCTCAGCCCTGGCTCCGAGCGGGCCCCGCCTCCAGGGTGCCTGGAGCCCGCCCCTCGCCCAG
GCTCCGCCTTCCCCCACGTGTCTGCGGCCGAGGGGAGGCGCCTGAGCCGGAGCGGGCTCTCCAC
CGGTCTGGCCCGGTCCTCATACAGGTTTCTGACAGCGGCTCCCGGGAGCGGCCCCGGCTGCCGG
ATGCTTCCGCCCCGACTGCGGCGGGCCGGGCTGGACGCTTAGTGCCCGGCTCGAGCCCTGCCTG
AGGCTCCCGCGGGGGTGGCAGCGGCCTCCGCCCCGCGGAGACCGAGCGGCTGGAGGACGAGGCG
GCGGTCGTGGGGAGGAGGATGGGGGCTAACCAGTTAGTGGTGCTCAACGTCTACGACATGTACT
GGATGAATGAATACACCTCATCTATCGGAATTGGAGTTTTTCATTCTGGAATTGAAGTATATGG
CAGAGAATTCGCTTATGGTGGCCATCCTTATCCTTTTTCTGGAATATTTGAAATTTCCCCAGGA
AATGCTGCTGAGCTAGGAGAAACATTTAAATTTAAAGAAGCTGTTGTTCTAGGGAGTACGGACT
TCCTGGAAGATGACATAGAAAAGATTGTGGAAGAGCTGGGGAAAGAGTACAAAGGCAACGCCTA
CCATCTGATGCACAAGAACTGCAACCACTTCTCCTCCGCCCTGTCAGAGATTCTCTGTGGGAAA
GAGATTCCTCGCTGGATCAACCGGCTGGCCTACTTCAGCTCCTGTATACCCTTTCTACAGAGTT
GCCTCCCAAAGGAGTGGCTCACTCCTGCGGCACTGCAGTCTAGTGTCAGCCAAGAACTCCAGGA
TGAACTGGAAGAAGCAGAGGACGCAGCCGCATCCACTGCCATGGCAAGTGCTGCAGCTGGAGGC
AGAACTGGGCGTCACACTAAACTATAATTATGATCTCTGCCGTCTGCCTTCAGAACGGTCTCTG
GCAGTTGAGTGTCACTAGAGAAAAAGAAAATAGAGTAAATGTCCTTTGGATATTTTGTATGCAA
AGATGGCTCTCCCCCAAATCCCAGTTTTTCAGCTCAGGATTATATTTGTAATCAAAAACAAAAA
AGAAAAAAAATCACTCGGCACAGGAGGGAGAACTTCGTACGAAGCTGCCCTCTTCTCTTTTCTT
TTTAACCCACTTGTAAATTTGGATTCACTTCCTCTGTTTTATACGAGCTCTGTTAAATTACGTT
TACAGTATTTTGTACCACTGTTTACAAATCTTGCATGGACTTCTGCCACCGTGAAGGAAGAGTA
TCCTCCTCTTCAGACGTGAGGCAGACCATCTCTGTACACTTCCTGACAGCTGCAGAGCCACGGC
CTAATAGTGGGCACAAGAGAAGGCTCTCACGACTGCAGGTCTCATCACCTGCTCACAGGCTGTC
CCTTAGAGTCCCATTTGGCACCCAGACACAGGAGTGCCAGCTGGCCTCATGTGAAGGAGCACAC
ATGGCCAGAGGGCTCCTTGGGCCCCAGGTCAGCTCCTTTCCACACCTCCTTCCTGTTCCGAGCA
GCACATTCCCCAAGGTGCCCATGGAGCAACTGGTTTCATCCCAAACACACCTGCTCAGCAGGGG
GGGGGTGTCGTGTCTGCCGGCTAGATGCCTCTGACCCTTTAATGAAGATGTGTTCATGGAAGAC
ACTCTTATAACGATGAGTGGTTTGCACATGTCTTACAGAGGGGCCTCATTTTTACTTTAGTACA
TTCTAAACTCCTCCCTGTACAGGATATTTTTGGTGGGCTGGGAGTATCCTAACCTAGCTTCCTG
AGCAGCAGTCTAAACTGACATTAAACTGCTTTTTAACTAGCCAGACTACCTTTTATACTGGACA
TTGAAAACTAGAATCTGAAACACACCTAACATTTAATACTTGTGTACACCATATCAGAAATGGC
TTGTTGGAGTTTTAGTTCATGGGGGAGTGGTTGCACCTCATAATAGAGATTCTATTTTCATTGA
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006250317 ⟹ XP_006250379

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,493,948 - 92,543,307 (+)	NCBI
mRatBN7.2	13	89,961,812 - 90,011,255 (+)	NCBI
Rnor_6.0	13	96,111,960 - 96,156,693 (+)	NCBI
Rnor_5.0	13	100,553,747 - 100,599,426 (+)	NCBI

Sequence:

show sequence

GGGAGGCGCCTGAGCCGGAGCGGGCTCTCCACCGGTCTGGCCCGGTCCTCATACAGGTTTCTGA
CAGCGGCTCCCGGGAGCGGCCCCGGCTGCCGGATGCTTCCGCCCCGACTGCGGCGGGCCGGGCT
GGACGCTTAGTGCCCGGCTCGAGCCCTGCCTGAGGCTCCCGCGGGGGTGGCAGCGGCCTCCGCC
CCGCGGAGACCGAGCGGCTGGAGGACGAGGCGGCGGTCGTGGGGAGGAGGATGGGGGCTAACCA
GTTAGTGGTGCTCAACGTCTACGACATGGGACCCACGAAGAAATTTCAGTCACTTCACTGTAGA
TATAACCTCCTGGACCAAATAGAAAGAAGAAAGCAAATGCAACACCAGCATTCATCTCTCTCTA
CTTTCTGAAGATGAATTGTGACTGGACACTCACGTGTCCACCATGCCTAGACTGAACCTTCAAA
CCTACTGGATGAATGAATACACCTCATCTATCGGAATTGGAGTTTTTCATTCTGGAATTGAAGT
ATATGGCAGAGAATTCGCTTATGGTGGCCATCCTTATCCTTTTTCTGGAATATTTGAAATTTCC
CCAGGAAATGCTGCTGAGCTAGGAGAAACATTTAAATTTAAAGAAGCTGTTGTTCTAGGGAGTA
CGGACTTCCTGGAAGATGACATAGAAAAGATTGTGGAAGAGCTGGGGAAAGAGTACAAAGGCAA
CGCCTACCATCTGATGCACAAGAACTGCAACCACTTCTCCTCCGCCCTGTCAGAGATTCTCTGT
GGGAAAGAGATTCCTCGCTGGATCAACCGGCTGGCCTACTTCAGCTCCTGTATACCCTTTCTAC
AGAGTTGCCTCCCAAAGGAGTGGCTCACTCCTGCGGCACTGCAGTCTAGTGTCAGCCAAGAACT
CCAGGATGAACTGGAAGAAGCAGAGGACGCAGCCGCATCCACTGCCATGGCAAGTGCTGCAGCT
GGAGGCAGAACTGGGCGTCACACTAAACTATAATTATGATCTCTGCCGTCTGCCTTCAGAACGG
TCTCTGGCAGTTGAGTGTCACTAGAGAAAAAGAAAATAGAGTAAATGTCCTTTGGATATTTTGT
ATGCAAAGATGGCTCTCCCCCAAATCCCAGTTTTTCAGCTCAGGATTATATTTGTAATCAAAAA
CAAAAAAGAAAAAAAATCACTCGGCACAGGAGGGAGAACTTCGTACGAAGCTGCCCTCTTCTCT
TTTCTTTTTAACCCACTTGTAAATTTGGATTCACTTCCTCTGTTTTATACGAGCTCTGTTAAAT
TACGTTTACAGTATTTTGTACCACTGTTTACAAATCTTGCATGGACTTCTGCCACCGTGAAGGA
AGAGTATCCTCCTCTTCAGACGTGAGGCAGACCATCTCTGTACACTTCCTGACAGCTGCAGAGC
CACGGCCTAATAGTGGGCACAAGAGAAGGCTCTCACGACTGCAGGTCTCATCACCTGCTCACAG
GCTGTCCCTTAGAGTCCCATTTGGCACCCAGACACAGGAGTGCCAGCTGGCCTCATGTGAAGGA
GCACACATGGCCAGAGGGCTCCTTGGGCCCCAGGTCAGCTCCTTTCCACACCTCCTTCCTGTTC
CGAGCAGCACATTCCCCAAGGTGCCCATGGAGCAACTGGTTTCATCCCAAACACACCTGCTCAG
CAGGGGGGGGGTGTCGTGTCTGCCGGCTAGATGCCTCTGACCCTTTAATGAAGATGTGTTCATG
GAAGACACTCTTATAACGATGAGTGGTTTGCACATGTCTTACAGAGGGGCCTCATTTTTACTTT
AGTACATTCTAAACTCCTCCCTGTACAGGATATTTTTGGTGGGCTGGGAGTATCCTAACCTAGC
TTCCTGAGCAGCAGTCTAAACTGACATTAAACTGCTTTTTAACTAGCCAGACTACCTTTTATAC
TGGACATTGAAAACTAGAATCTGAAACACACCTAACATTTAATACTTGTGTACACCATATCAGA
AATGGCTTGTTGGAGTTTTAGTTCATGGGGGAGTGGTTGCACCTCATAATAGAGATTCTATTTT
CATTGATAACTTGTTAAAAATCATATTTTTGTGTCTTAAATTCATCTTTTTATGTTCTCAATGT
ACATCTCTTACATAACATACCCTTAGGAGGAAGTTGTGCTACAGATAAGTCTTTAGCAAGGAAG
TCATCTGTTAGAGTCCAACCCCCAGTGAGCCTTGGATGTAGAACCAATCATTACGTCACAATCA
ATGTTCTGCCTTAAGAGTGAGTGTGTAAGTGGATGCAACATAGGAACATCCCAGGTACTGACTG
CAGCTTCCGATGCAAGGTTAGTGTGGGAGCCACAGTCTGTGTGAGGACGATACATGTCTTTGAG
TAAATGACATCTTTAACTTTGCCATGAGCTGATTTTGATTGATACTTATTAACGTAAGCACACT
CTCTTTATAGGGAAAGTAAACCTTGGGTTATTTGACACTTTGTGCTGTTTGACTGTTCCGTTCC
AGAGAAGAAAGTTGCTGCAGGTTACTCTGCCAGGGGGCGGGGGGGGGGTGCATTTGTTTTAGGA
AACGTGCAGCAAGACAGGATTGTGGGATTGTGGTCTTTATGAAGAGTTGACGTAGTTCAGTTCT
GAAAAGAAGACTGAGGACAAGACACTAATGCTCCCAAGAGGTGTTCACTACAAAAGCCCAAGCC
CTCAGCCCAGCTTAGTAGGAGTTGACTTGGGGTTTTCTGTTTGTTTGTTTTATTAATCGTGTGG
ATCATGGTGTTTCTATGAGATATAAAAATGTTTTGACCCAAGGGAATGGCCCCTCAGTTAGACA
TTTCTCGGTAAATAGCCAGGAACATCTCTCTGCTCACCCATAGTTCAGCAGCTCAGCACACACA
CGAGTGACTTGCTGTTCTCACACCTGACTGTGATATTTGCAATTTGAAGTAGTGTAAAAGTCTT
GTAGGAGATAAACAGCGTGTGTGCAGGTCACCTGAGAGTCAGGACACACGATTCTTTGCACTTT
AGTGTACCTGAGGTTAAGAGGAAGAGAATCTCATTTAGTGAAACCTTCTCTACAGTGCAAATTA
AGAATGGGTTAATTAACTTTGCTTGTCTTGCCCTCAGAAGAAACAATCTTGTTCTCAGCATGAA
CTCCTAAGAAAACCCCTAAGTCAGAACCCGAGTCATGAATTCACATGTGATCCCGGGAGTCAGA
TACAGCTTTTGTAGTTGCAACCAAGTGAACTGTTTCTCCTGGTAGGTGTTCAAACAGTAATAGC
AGTGAAAGATCAGGTAGCTGGGTTCTGGTGCTTGTTTTAAATACGCTTGGGCTTTTAAATCCTC
ACTGGGGGCATTGGCTTTAGATTGTGGCTTATGGGGCTGTGGAAGGCGGTGATTGTCCTCGAGG
CCTGACCTCCAGCCAACTCTTGCTCTGACTCACAGCAATAGCATAGCTACCCATCACCAGCATC
TTACAGAGCAGGGAACCCCAGGTTTAGTCCATCGATAGATAGCCTGGTGCGTCTGTGTGCGTGT
GTGCATGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTCAGGC
ACCGCAGACAGCAGCAGGACTCTTTCCCATGGCTTCTTCCATCAGAAGACGGGTAGAAACACGT
TCACTGCTTCTCAGCTCTAACCATTGTGTCGTCCTGTGGCTCCATTATGTCTTTACTGCAGCTT
TGGTGTATGCTGTTTTCCTTAAATGACTAATTTTAAAAGTTAGTTTTTTCAGCAGTGGCCATCC
CATTTGGGCCAGTATGGTTTGAAAGTGTTGCTTGGTTGTTAGACTTTCGTTGTCTGCTTGGTCT
GTTCACACACATCTCCGCTGTCAACAAGTGGGACGGCTGTCAACAAATCTTCATGGACCTGAAG
AGAATTTCTGTGAGGATGACTGCAAGTGTACTGTCACTCACAGTGTCTCTAAAACACCAAGAGC
TCTCCCTCCCTTTTGCTACCTTGATATAGCATTGGGTTATCATGTCACAACATTGGAATACATC
GATTTATTAAAAACTACTTTTATAAGAAA

hide sequence

RefSeq Acc Id:

XM_017598724 ⟹ XP_017454213

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,493,948 - 92,543,307 (+)	NCBI
mRatBN7.2	13	89,962,245 - 90,011,255 (+)	NCBI
Rnor_6.0	13	96,111,960 - 96,156,693 (+)	NCBI

Sequence:

show sequence

GGGAGGCGCCTGAGCCGGAGCGGGCTCTCCACCGGTCTGGCCCGGTCCTCATACAGGTTTCTGA
CAGCGGCTCCCGGGAGCGGCCCCGGCTGCCGGATGCTTCCGCCCCGACTGCGGCGGGCCGGGCT
GGACGCTTAGTGCCCGGCTCGAGCCCTGCCTGAGGCTCCCGCGGGGGTGGCAGCGGCCTCCGCC
CCGCGGAGACCGAGCGGCTGGAGGACGAGGCGGCGGTCGTGGGGAGGAGGATGGGGGCTAACCA
GTTAGTGGTGCTCAACGTCTACGACATGGGACCCACGAAGAAATTTCAGTCACTTCACTGTAGA
TATAACCTCCTGGACCAAATAGAAAGAAGAAAGCAAATGCAACACCAGCATTCATCTCTCTCTA
CTTTCTGAAGATGAATTGTGACTGGACACTCACGTGTCCACCATGCCTAGACTGAACCTTCAAA
CCGAAGCAGAGTTTCTCTTTAAAAGCACCAGTCTCTAACAATCGCAGCTGCTGTCTTCACGTGT
GTCTTTTCTGCATCTTTACTTTTATGATGTGTGTGTTGCATGATGGGTTACCATGAGGTCATGC
CATAGCATACATTCGGAGTACTGGATGAATGAATACACCTCATCTATCGGAATTGGAGTTTTTC
ATTCTGGAATTGAAGTATATGGCAGAGAATTCGCTTATGGTGGCCATCCTTATCCTTTTTCTGG
AATATTTGAAATTTCCCCAGGAAATGCTGCTGAGCTAGGAGAAACATTTAAATTTAAAGAAGCT
GTTGTTCTAGGGAGTACGGACTTCCTGGAAGATGACATAGAAAAGATTGTGGAAGAGCTGGGGA
AAGAGTACAAAGGCAACGCCTACCATCTGATGCACAAGAACTGCAACCACTTCTCCTCCGCCCT
GTCAGAGATTCTCTGTGGGAAAGAGATTCCTCGCTGGATCAACCGGCTGGCCTACTTCAGCTCC
TGTATACCCTTTCTACAGAGTTGCCTCCCAAAGGAGTGGCTCACTCCTGCGGCACTGCAGTCTA
GTGTCAGCCAAGAACTCCAGGATGAACTGGAAGAAGCAGAGGACGCAGCCGCATCCACTGCCAT
GGCAAGTGCTGCAGCTGGAGGCAGAACTGGGCGTCACACTAAACTATAATTATGATCTCTGCCG
TCTGCCTTCAGAACGGTCTCTGGCAGTTGAGTGTCACTAGAGAAAAAGAAAATAGAGTAAATGT
CCTTTGGATATTTTGTATGCAAAGATGGCTCTCCCCCAAATCCCAGTTTTTCAGCTCAGGATTA
TATTTGTAATCAAAAACAAAAAAGAAAAAAAATCACTCGGCACAGGAGGGAGAACTTCGTACGA
AGCTGCCCTCTTCTCTTTTCTTTTTAACCCACTTGTAAATTTGGATTCACTTCCTCTGTTTTAT
ACGAGCTCTGTTAAATTACGTTTACAGTATTTTGTACCACTGTTTACAAATCTTGCATGGACTT
CTGCCACCGTGAAGGAAGAGTATCCTCCTCTTCAGACGTGAGGCAGACCATCTCTGTACACTTC
CTGACAGCTGCAGAGCCACGGCCTAATAGTGGGCACAAGAGAAGGCTCTCACGACTGCAGGTCT
CATCACCTGCTCACAGGCTGTCCCTTAGAGTCCCATTTGGCACCCAGACACAGGAGTGCCAGCT
GGCCTCATGTGAAGGAGCACACATGGCCAGAGGGCTCCTTGGGCCCCAGGTCAGCTCCTTTCCA
CACCTCCTTCCTGTTCCGAGCAGCACATTCCCCAAGGTGCCCATGGAGCAACTGGTTTCATCCC
AAACACACCTGCTCAGCAGGGGGGGGGTGTCGTGTCTGCCGGCTAGATGCCTCTGACCCTTTAA
TGAAGATGTGTTCATGGAAGACACTCTTATAACGATGAGTGGTTTGCACATGTCTTACAGAGGG
GCCTCATTTTTACTTTAGTACATTCTAAACTCCTCCCTGTACAGGATATTTTTGGTGGGCTGGG
AGTATCCTAACCTAGCTTCCTGAGCAGCAGTCTAAACTGACATTAAACTGCTTTTTAACTAGCC
AGACTACCTTTTATACTGGACATTGAAAACTAGAATCTGAAACACACCTAACATTTAATACTTG
TGTACACCATATCAGAAATGGCTTGTTGGAGTTTTAGTTCATGGGGGAGTGGTTGCACCTCATA
ATAGAGATTCTATTTTCATTGATAACTTGTTAAAAATCATATTTTTGTGTCTTAAATTCATCTT
TTTATGTTCTCAATGTACATCTCTTACATAACATACCCTTAGGAGGAAGTTGTGCTACAGATAA
GTCTTTAGCAAGGAAGTCATCTGTTAGAGTCCAACCCCCAGTGAGCCTTGGATGTAGAACCAAT
CATTACGTCACAATCAATGTTCTGCCTTAAGAGTGAGTGTGTAAGTGGATGCAACATAGGAACA
TCCCAGGTACTGACTGCAGCTTCCGATGCAAGGTTAGTGTGGGAGCCACAGTCTGTGTGAGGAC
GATACATGTCTTTGAGTAAATGACATCTTTAACTTTGCCATGAGCTGATTTTGATTGATACTTA
TTAACGTAAGCACACTCTCTTTATAGGGAAAGTAAACCTTGGGTTATTTGACACTTTGTGCTGT
TTGACTGTTCCGTTCCAGAGAAGAAAGTTGCTGCAGGTTACTCTGCCAGGGGGCGGGGGGGGGG
TGCATTTGTTTTAGGAAACGTGCAGCAAGACAGGATTGTGGGATTGTGGTCTTTATGAAGAGTT
GACGTAGTTCAGTTCTGAAAAGAAGACTGAGGACAAGACACTAATGCTCCCAAGAGGTGTTCAC
TACAAAAGCCCAAGCCCTCAGCCCAGCTTAGTAGGAGTTGACTTGGGGTTTTCTGTTTGTTTGT
TTTATTAATCGTGTGGATCATGGTGTTTCTATGAGATATAAAAATGTTTTGACCCAAGGGAATG
GCCCCTCAGTTAGACATTTCTCGGTAAATAGCCAGGAACATCTCTCTGCTCACCCATAGTTCAG
CAGCTCAGCACACACACGAGTGACTTGCTGTTCTCACACCTGACTGTGATATTTGCAATTTGAA
GTAGTGTAAAAGTCTTGTAGGAGATAAACAGCGTGTGTGCAGGTCACCTGAGAGTCAGGACACA
CGATTCTTTGCACTTTAGTGTACCTGAGGTTAAGAGGAAGAGAATCTCATTTAGTGAAACCTTC
TCTACAGTGCAAATTAAGAATGGGTTAATTAACTTTGCTTGTCTTGCCCTCAGAAGAAACAATC
TTGTTCTCAGCATGAACTCCTAAGAAAACCCCTAAGTCAGAACCCGAGTCATGAATTCACATGT
GATCCCGGGAGTCAGATACAGCTTTTGTAGTTGCAACCAAGTGAACTGTTTCTCCTGGTAGGTG
TTCAAACAGTAATAGCAGTGAAAGATCAGGTAGCTGGGTTCTGGTGCTTGTTTTAAATACGCTT
GGGCTTTTAAATCCTCACTGGGGGCATTGGCTTTAGATTGTGGCTTATGGGGCTGTGGAAGGCG
GTGATTGTCCTCGAGGCCTGACCTCCAGCCAACTCTTGCTCTGACTCACAGCAATAGCATAGCT
ACCCATCACCAGCATCTTACAGAGCAGGGAACCCCAGGTTTAGTCCATCGATAGATAGCCTGGT
GCGTCTGTGTGCGTGTGTGCATGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGGTCAGGCACCGCAGACAGCAGCAGGACTCTTTCCCATGGCTTCTTCCATCAGAAG
ACGGGTAGAAACACGTTCACTGCTTCTCAGCTCTAACCATTGTGTCGTCCTGTGGCTCCATTAT
GTCTTTACTGCAGCTTTGGTGTATGCTGTTTTCCTTAAATGACTAATTTTAAAAGTTAGTTTTT
TCAGCAGTGGCCATCCCATTTGGGCCAGTATGGTTTGAAAGTGTTGCTTGGTTGTTAGACTTTC
GTTGTCTGCTTGGTCTGTTCACACACATCTCCGCTGTCAACAAGTGGGACGGCTGTCAACAAAT
CTTCATGGACCTGAAGAGAATTTCTGTGAGGATGACTGCAAGTGTACTGTCACTCACAGTGTCT
CTAAAACACCAAGAGCTCTCCCTCCCTTTTGCTACCTTGATATAGCATTGGGTTATCATGTCAC
AACATTGGAATACATCGATTTATTAAAAACTACTTTTATAAGAAA

hide sequence

RefSeq Acc Id:

XM_017598725 ⟹ XP_017454214

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,494,498 - 92,543,307 (+)	NCBI
mRatBN7.2	13	89,962,854 - 90,011,255 (+)	NCBI
Rnor_6.0	13	96,112,259 - 96,156,693 (+)	NCBI

Sequence:

show sequence

GGCGGCCCGCGCCGGCCGGCACTCTGACGGGCTGGGACCCGGGCTCGGTGCTTCCTGCCTCGAG
CCCCCGCCTCCAGTTTAGTTCTCAGGGGTTGGGGGAGGGGACAGTGGCGCTGTCTTCTAATCCG
GAGACTGGCCGGCCGCCTCTTGGAGGTGTCCAGTCATTCTGAGGGAGGGCTTGGGCTCGAGCTT
CCTCCGAGCCCTCAGCTCCCCCGACTGTGGGCCCGACCCCTGGGCGGATGAGCGGTGCCCTATC
CGCGAAGCTTCTGTCGCTGTGCGACCTCCCCGCCGTCACCTGGCCTCGAAGCTGCCCAACTCCC
CTCTGCCCTGCTCCTGCTGGCCCTTTCCTGTATCCAAATGCTCAAGTCTTCCAGTAACTCCCAA
CCCTTCAAGTCTAGAAAGTCACAGCTGCGATGCGGATGCTAGAGTCTCCCTAAAGGTGAACAGG
ATCCAACACACCCTCATCTCCAAGGCAGCCTCATTAAAATGAATGAAGCTAAAATTTATCTAGA
AAATAGCGCCGTTGAATTATTTAGAGATCACAGAGGTGATCACTAGATTCCGAAGACCACTTTC
CAGGTGATGCAACAGGTGGATGACGTGACCACTAGAGAGGGAAGGGAAGCCTTGTTTATTATGT
CATCTAACTTTGAAGAGCTGCAAACACGCAGGCTAGGGGGGTCAAAGTTTGGGTTCCCTGGGGT
TGCAATTGCAATAATAGCCCTAGAAGAAGCACGAGTAGAGAATGATCGCCACTGGACCCACGAA
GAAATTTCAGTCACTTCACTGTAGATATAACCTCCTGGACCAAATAGAAAGAAGAAAGCAAATG
CAACACCAGCATTCATCTCTCTCTACTTTCTGAAGATGAATTGTGACTGGACACTCACGTGTCC
ACCATGCCTAGACTGAACCTTCAAACCGAAGCAGAGTTTCTCTTTAAAAGCACCAGTCTCTAAC
AATCGCAGCTGCTGTCTTCACGTGTGTCTTTTCTGCATCTTTACTTTTATGATGTGTGTGTTGC
ATGATGGGTTACCATGAGGTCATGCCATAGCATACATTCGGAGTACTGGATGAATGAATACACC
TCATCTATCGGAATTGGAGTTTTTCATTCTGGAATTGAAGTATATGGCAGAGAATTCGCTTATG
GTGGCCATCCTTATCCTTTTTCTGGAATATTTGAAATTTCCCCAGGAAATGCTGCTGAGCTAGG
AGAAACATTTAAATTTAAAGAAGCTGTTGTTCTAGGGAGTACGGACTTCCTGGAAGATGACATA
GAAAAGATTGTGGAAGAGCTGGGGAAAGAGTACAAAGGCAACGCCTACCATCTGATGCACAAGA
ACTGCAACCACTTCTCCTCCGCCCTGTCAGAGATTCTCTGTGGGAAAGAGATTCCTCGCTGGAT
CAACCGGCTGGCCTACTTCAGCTCCTGTATACCCTTTCTACAGAGTTGCCTCCCAAAGGAGTGG
CTCACTCCTGCGGCACTGCAGTCTAGTGTCAGCCAAGAACTCCAGGATGAACTGGAAGAAGCAG
AGGACGCAGCCGCATCCACTGCCATGGCAAGTGCTGCAGCTGGAGGCAGAACTGGGCGTCACAC
TAAACTATAATTATGATCTCTGCCGTCTGCCTTCAGAACGGTCTCTGGCAGTTGAGTGTCACTA
GAGAAAAAGAAAATAGAGTAAATGTCCTTTGGATATTTTGTATGCAAAGATGGCTCTCCCCCAA
ATCCCAGTTTTTCAGCTCAGGATTATATTTGTAATCAAAAACAAAAAAGAAAAAAAATCACTCG
GCACAGGAGGGAGAACTTCGTACGAAGCTGCCCTCTTCTCTTTTCTTTTTAACCCACTTGTAAA
TTTGGATTCACTTCCTCTGTTTTATACGAGCTCTGTTAAATTACGTTTACAGTATTTTGTACCA
CTGTTTACAAATCTTGCATGGACTTCTGCCACCGTGAAGGAAGAGTATCCTCCTCTTCAGACGT
GAGGCAGACCATCTCTGTACACTTCCTGACAGCTGCAGAGCCACGGCCTAATAGTGGGCACAAG
AGAAGGCTCTCACGACTGCAGGTCTCATCACCTGCTCACAGGCTGTCCCTTAGAGTCCCATTTG
GCACCCAGACACAGGAGTGCCAGCTGGCCTCATGTGAAGGAGCACACATGGCCAGAGGGCTCCT
TGGGCCCCAGGTCAGCTCCTTTCCACACCTCCTTCCTGTTCCGAGCAGCACATTCCCCAAGGTG
CCCATGGAGCAACTGGTTTCATCCCAAACACACCTGCTCAGCAGGGGGGGGGTGTCGTGTCTGC
CGGCTAGATGCCTCTGACCCTTTAATGAAGATGTGTTCATGGAAGACACTCTTATAACGATGAG
TGGTTTGCACATGTCTTACAGAGGGGCCTCATTTTTACTTTAGTACATTCTAAACTCCTCCCTG
TACAGGATATTTTTGGTGGGCTGGGAGTATCCTAACCTAGCTTCCTGAGCAGCAGTCTAAACTG
ACATTAAACTGCTTTTTAACTAGCCAGACTACCTTTTATACTGGACATTGAAAACTAGAATCTG
AAACACACCTAACATTTAATACTTGTGTACACCATATCAGAAATGGCTTGTTGGAGTTTTAGTT
CATGGGGGAGTGGTTGCACCTCATAATAGAGATTCTATTTTCATTGATAACTTGTTAAAAATCA
TATTTTTGTGTCTTAAATTCATCTTTTTATGTTCTCAATGTACATCTCTTACATAACATACCCT
TAGGAGGAAGTTGTGCTACAGATAAGTCTTTAGCAAGGAAGTCATCTGTTAGAGTCCAACCCCC
AGTGAGCCTTGGATGTAGAACCAATCATTACGTCACAATCAATGTTCTGCCTTAAGAGTGAGTG
TGTAAGTGGATGCAACATAGGAACATCCCAGGTACTGACTGCAGCTTCCGATGCAAGGTTAGTG
TGGGAGCCACAGTCTGTGTGAGGACGATACATGTCTTTGAGTAAATGACATCTTTAACTTTGCC
ATGAGCTGATTTTGATTGATACTTATTAACGTAAGCACACTCTCTTTATAGGGAAAGTAAACCT
TGGGTTATTTGACACTTTGTGCTGTTTGACTGTTCCGTTCCAGAGAAGAAAGTTGCTGCAGGTT
ACTCTGCCAGGGGGCGGGGGGGGGGTGCATTTGTTTTAGGAAACGTGCAGCAAGACAGGATTGT
GGGATTGTGGTCTTTATGAAGAGTTGACGTAGTTCAGTTCTGAAAAGAAGACTGAGGACAAGAC
ACTAATGCTCCCAAGAGGTGTTCACTACAAAAGCCCAAGCCCTCAGCCCAGCTTAGTAGGAGTT
GACTTGGGGTTTTCTGTTTGTTTGTTTTATTAATCGTGTGGATCATGGTGTTTCTATGAGATAT
AAAAATGTTTTGACCCAAGGGAATGGCCCCTCAGTTAGACATTTCTCGGTAAATAGCCAGGAAC
ATCTCTCTGCTCACCCATAGTTCAGCAGCTCAGCACACACACGAGTGACTTGCTGTTCTCACAC
CTGACTGTGATATTTGCAATTTGAAGTAGTGTAAAAGTCTTGTAGGAGATAAACAGCGTGTGTG
CAGGTCACCTGAGAGTCAGGACACACGATTCTTTGCACTTTAGTGTACCTGAGGTTAAGAGGAA
GAGAATCTCATTTAGTGAAACCTTCTCTACAGTGCAAATTAAGAATGGGTTAATTAACTTTGCT
TGTCTTGCCCTCAGAAGAAACAATCTTGTTCTCAGCATGAACTCCTAAGAAAACCCCTAAGTCA
GAACCCGAGTCATGAATTCACATGTGATCCCGGGAGTCAGATACAGCTTTTGTAGTTGCAACCA
AGTGAACTGTTTCTCCTGGTAGGTGTTCAAACAGTAATAGCAGTGAAAGATCAGGTAGCTGGGT
TCTGGTGCTTGTTTTAAATACGCTTGGGCTTTTAAATCCTCACTGGGGGCATTGGCTTTAGATT
GTGGCTTATGGGGCTGTGGAAGGCGGTGATTGTCCTCGAGGCCTGACCTCCAGCCAACTCTTGC
TCTGACTCACAGCAATAGCATAGCTACCCATCACCAGCATCTTACAGAGCAGGGAACCCCAGGT
TTAGTCCATCGATAGATAGCCTGGTGCGTCTGTGTGCGTGTGTGCATGTGCGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTCAGGCACCGCAGACAGCAGCAGGACTCT
TTCCCATGGCTTCTTCCATCAGAAGACGGGTAGAAACACGTTCACTGCTTCTCAGCTCTAACCA
TTGTGTCGTCCTGTGGCTCCATTATGTCTTTACTGCAGCTTTGGTGTATGCTGTTTTCCTTAAA
TGACTAATTTTAAAAGTTAGTTTTTTCAGCAGTGGCCATCCCATTTGGGCCAGTATGGTTTGAA
AGTGTTGCTTGGTTGTTAGACTTTCGTTGTCTGCTTGGTCTGTTCACACACATCTCCGCTGTCA
ACAAGTGGGACGGCTGTCAACAAATCTTCATGGACCTGAAGAGAATTTCTGTGAGGATGACTGC
AAGTGTACTGTCACTCACAGTGTCTCTAAAACACCAAGAGCTCTCCCTCCCTTTTGCTACCTTG
ATATAGCATTGGGTTATCATGTCACAACATTGGAATACATCGATTTATTAAAAACTACTTTTAT
AAGAAA

hide sequence

RefSeq Acc Id:

XM_039090529 ⟹ XP_038946457

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,494,500 - 92,543,307 (+)	NCBI
mRatBN7.2	13	89,962,854 - 90,011,255 (+)	NCBI

RefSeq Acc Id:

XM_039090530 ⟹ XP_038946458

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,493,765 - 92,543,307 (+)	NCBI
mRatBN7.2	13	89,961,767 - 90,011,255 (+)	NCBI

RefSeq Acc Id:

XM_039090532 ⟹ XP_038946460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,493,766 - 92,532,185 (+)	NCBI
mRatBN7.2	13	89,961,772 - 90,003,485 (+)	NCBI

RefSeq Acc Id:

XM_063272134 ⟹ XP_063128204

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,499,411 - 92,543,307 (+)	NCBI

RefSeq Acc Id:

XM_063272135 ⟹ XP_063128205

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,499,411 - 92,543,307 (+)	NCBI

RefSeq Acc Id:

XM_063272136 ⟹ XP_063128206

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,495,233 - 92,543,307 (+)	NCBI

RefSeq Acc Id:

XM_063272137 ⟹ XP_063128207

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	92,499,401 - 92,543,307 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013895	(Get FASTA)	NCBI Sequence Viewer
	XP_006250379	(Get FASTA)	NCBI Sequence Viewer
	XP_017454213	(Get FASTA)	NCBI Sequence Viewer
	XP_017454214	(Get FASTA)	NCBI Sequence Viewer
	XP_038946457	(Get FASTA)	NCBI Sequence Viewer
	XP_038946458	(Get FASTA)	NCBI Sequence Viewer
	XP_038946460	(Get FASTA)	NCBI Sequence Viewer
	XP_063128204	(Get FASTA)	NCBI Sequence Viewer
	XP_063128205	(Get FASTA)	NCBI Sequence Viewer
	XP_063128206	(Get FASTA)	NCBI Sequence Viewer
	XP_063128207	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83584	(Get FASTA)	NCBI Sequence Viewer
	EDL94795	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005967
	ENSRNOP00000005967.5
	ENSRNOP00000091146
	ENSRNOP00000103188
	ENSRNOP00000107831
GenBank Protein	Q5XIT6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001013895 ⟸ NM_001013873
- UniProtKB:	Q5XIT6 (UniProtKB/Swiss-Prot), A0A8I6GJD8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGANQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAAELG ETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWI NRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQDELEEAEDAAASTAMASAAAGGRTGRHT KL hide sequence

RefSeq Acc Id:	XP_006250379 ⟸ XM_006250317
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AD20 (UniProtKB/TrEMBL), A0A8I6AER3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRLNLQTYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAAELGETFKFK EAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLAYF SSCIPFLQSCLPKEWLTPAALQSSVSQELQDELEEAEDAAASTAMASAAAGGRTGRHTKL hide sequence

RefSeq Acc Id:	XP_017454213 ⟸ XM_017598724
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AF15 (UniProtKB/TrEMBL), A0A8I6GJD8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSCHSIHSEYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAAELGETFK FKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLA YFSSCIPFLQSCLPKEWLTPAALQSSVSQELQDELEEAEDAAASTAMASAAAGGRTGRHTKL hide sequence

RefSeq Acc Id:	XP_017454214 ⟸ XM_017598725
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AF15 (UniProtKB/TrEMBL), A0A8I6GJD8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSCHSIHSEYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNAAELGETFK FKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSALSEILCGKEIPRWINRLA YFSSCIPFLQSCLPKEWLTPAALQSSVSQELQDELEEAEDAAASTAMASAAAGGRTGRHTKL hide sequence

Ensembl Acc Id:

ENSRNOP00000069021 ⟸ ENSRNOT00000087964

Ensembl Acc Id:

ENSRNOP00000005967 ⟸ ENSRNOT00000005967

RefSeq Acc Id:	XP_038946458 ⟸ XM_039090530
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038946460 ⟸ XM_039090532
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038946457 ⟸ XM_039090529
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6GJD8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000090046 ⟸ ENSRNOT00000115830

Ensembl Acc Id:

ENSRNOP00000090662 ⟸ ENSRNOT00000096311

Ensembl Acc Id:

ENSRNOP00000091146 ⟸ ENSRNOT00000098343

Ensembl Acc Id:

ENSRNOP00000091139 ⟸ ENSRNOT00000108395

RefSeq Acc Id:	XP_063128206 ⟸ XM_063272136
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AD20 (UniProtKB/TrEMBL), A0A8I6AER3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128207 ⟸ XM_063272137
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063128204 ⟸ XM_063272134
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AF15 (UniProtKB/TrEMBL), A0A8I6GJD8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128205 ⟸ XM_063272135
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AF15 (UniProtKB/TrEMBL), A0A8I6GJD8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000107831 ⟸ ENSRNOT00000149433

Ensembl Acc Id:

ENSRNOP00000103188 ⟸ ENSRNOT00000130824

Ensembl Acc Id:

ENSRNOP00000100406 ⟸ ENSRNOT00000149431

Protein Domains

PPPDE

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIT6-F1-model_v2	AlphaFold	Q5XIT6	1-194	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699046

Promoter ID:

EPDNEW_R9571

Type:

initiation region

Name:

Desi2_1

Description:

desumoylating isopeptidase 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	96,111,976 - 96,112,036	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359392	AgrOrtholog
BioCyc Gene	G2FUF-17177	BioCyc
Ensembl Genes	ENSRNOG00000004524	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000005967	ENTREZGENE
	ENSRNOT00000005967.8	UniProtKB/Swiss-Prot
	ENSRNOT00000098343	ENTREZGENE
	ENSRNOT00000130824	ENTREZGENE
	ENSRNOT00000149433	ENTREZGENE
Gene3D-CATH	3.90.1720.30	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7131107	IMAGE-MGC_LOAD
InterPro	PPPDE_dom	UniProtKB/Swiss-Prot
	PPPDE_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:289277	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94230	IMAGE-MGC_LOAD
NCBI Gene	289277	ENTREZGENE
PANTHER	DEUBIQUITINASE DESI2	UniProtKB/Swiss-Prot
	PTHR12378	UniProtKB/Swiss-Prot
Pfam	Peptidase_C97	UniProtKB/Swiss-Prot
PhenoGen	Desi2	PhenoGen
PROSITE	PPPDE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000004524	RatGTEx
SMART	DUF862	UniProtKB/Swiss-Prot
UniProt	A0A0G2JUA0_RAT	UniProtKB/TrEMBL
	A0A8I6AD20	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AER3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AF15	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GJD8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LEU4_RAT	UniProtKB/TrEMBL
	A0ABK0LJK0_RAT	UniProtKB/TrEMBL
	A0ABK0LWD6_RAT	UniProtKB/TrEMBL
	DESI2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-10	Desi2	desumoylating isopeptidase 2	Pppde1	PPPDE peptidase domain containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-02-23	Pppde1	PPPDE peptidase domain containing 1	Fam152a	family with sequence similarity 152, member A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Fam152a	family with sequence similarity 152, member A	PNAS-4	CGI-146 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-29	PNAS-4	CGI-146 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD