Crppa (CDP-L-ribitol pyrophosphorylase A) - Rat Genome Database

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Gene: Crppa (CDP-L-ribitol pyrophosphorylase A) Rattus norvegicus
Analyze
Symbol: Crppa
Name: CDP-L-ribitol pyrophosphorylase A
RGD ID: 1359368
Description: Predicted to enable D-ribitol-5-phosphate cytidylyltransferase activity and protein homodimerization activity. Predicted to be involved in protein O-linked glycosylation via mannose. Predicted to act upstream of or within axon guidance and protein glycosylation. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2U and congenital muscular dystrophy-dystroglycanopathy type A7. Orthologous to human CRPPA (CDP-L-ribitol pyrophosphorylase A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aconitine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase-like protein; D-ribitol-5-phosphate cytidylyltransferase; isoprenoid synthase domain containing; isoprenoid synthase domain-containing protein; Ispd; LOC493574; Nip; notch1-induced protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8658,847,550 - 59,124,309 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl658,848,621 - 59,181,406 (+)EnsemblGRCr8
mRatBN7.2653,120,264 - 53,397,030 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl653,121,438 - 53,397,028 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx653,411,532 - 53,688,416 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0653,726,406 - 54,003,317 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0653,200,797 - 53,477,789 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0655,880,136 - 56,159,466 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl655,881,387 - 56,159,464 (+)Ensemblrn6Rnor6.0
Rnor_5.0665,490,939 - 65,818,620 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4655,139,155 - 55,419,630 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera652,259,290 - 52,534,570 (+)NCBICelera
RGSC_v3.1655,421,454 - 55,422,754 (+)NCBI
Cytogenetic Map6q16-q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22522420   PMID:22522421   PMID:23217742   PMID:26687144  


Genomics

Comparative Map Data
Crppa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8658,847,550 - 59,124,309 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl658,848,621 - 59,181,406 (+)EnsemblGRCr8
mRatBN7.2653,120,264 - 53,397,030 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl653,121,438 - 53,397,028 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx653,411,532 - 53,688,416 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0653,726,406 - 54,003,317 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0653,200,797 - 53,477,789 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0655,880,136 - 56,159,466 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl655,881,387 - 56,159,464 (+)Ensemblrn6Rnor6.0
Rnor_5.0665,490,939 - 65,818,620 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4655,139,155 - 55,419,630 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera652,259,290 - 52,534,570 (+)NCBICelera
RGSC_v3.1655,421,454 - 55,422,754 (+)NCBI
Cytogenetic Map6q16-q21NCBI
CRPPA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38716,087,525 - 16,421,538 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl716,087,525 - 16,502,504 (-)Ensemblhg38GRCh38
GRCh37716,127,150 - 16,461,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36716,097,786 - 16,427,472 (-)NCBIBuild 36Build 36hg18NCBI36
Celera716,106,872 - 16,440,699 (-)NCBICelera
Cytogenetic Map7p21.2NCBI
HuRef716,012,324 - 16,347,484 (-)NCBIHuRef
CHM1_1716,126,841 - 16,460,716 (-)NCBICHM1_1
T2T-CHM13v2.0716,220,757 - 16,551,280 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2716,180,240 - 16,514,081 (-)NCBI
Crppa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391236,430,334 - 36,739,502 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1236,431,449 - 36,739,502 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381236,380,575 - 36,689,503 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1236,381,450 - 36,689,503 (+)Ensemblmm10GRCm38
MGSCv371237,108,106 - 37,416,031 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361236,891,849 - 37,015,131 (+)NCBIMGSCv36mm8
Celera1237,825,234 - 38,127,522 (+)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1216.84NCBI
Crppa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541019,359,868 - 19,614,344 (-)Ensembl
ChiLan1.0NW_00495541019,359,495 - 19,614,283 (-)NCBIChiLan1.0ChiLan1.0
CRPPA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2620,926,262 - 21,257,091 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1769,249,358 - 69,581,484 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0716,747,569 - 17,078,389 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1716,076,235 - 16,405,268 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl716,077,091 - 16,405,220 (-)EnsemblpanPan2panpan1.1
CRPPA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11430,697,060 - 30,989,423 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1430,648,128 - 30,989,604 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1430,218,221 - 30,510,640 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01430,609,518 - 30,909,358 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1430,608,023 - 30,908,861 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11430,712,952 - 31,011,922 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01430,431,982 - 30,724,382 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01430,744,230 - 31,036,870 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Crppa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511874,982,852 - 75,270,444 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365462,657,392 - 2,945,115 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365462,658,195 - 2,945,542 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRPPA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl985,422,317 - 85,710,750 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1985,419,401 - 85,711,146 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2994,460,506 - 94,549,186 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRPPA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12141,691,771 - 42,008,484 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2141,691,912 - 42,010,301 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604262,495,611 - 62,819,031 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crppa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473913,814,072 - 14,116,020 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473913,813,779 - 14,114,296 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Crppa
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1749,925,492 - 50,182,940 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Crppa
1763 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:664
Count of miRNA genes:270
Interacting mature miRNAs:340
Transcripts:ENSRNOT00000008312
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63902865963457441Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat

Markers in Region
RH128230  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2653,396,554 - 53,396,740 (+)MAPPERmRatBN7.2
Rnor_6.0656,158,991 - 56,159,176NCBIRnor6.0
Rnor_5.0665,769,360 - 65,769,545UniSTSRnor5.0
RGSC_v3.4655,419,155 - 55,419,340UniSTSRGSC3.4
Celera652,534,095 - 52,534,280UniSTS
RH 3.4 Map6381.7UniSTS
Cytogenetic Map6q16UniSTS
AU049968  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2653,303,028 - 53,303,211 (+)MAPPERmRatBN7.2
Rnor_6.0656,063,514 - 56,063,696NCBIRnor6.0
Rnor_5.0665,674,542 - 65,674,724UniSTSRnor5.0
RGSC_v3.4655,322,005 - 55,322,187UniSTSRGSC3.4
Cytogenetic Map6q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 66 59 6 330 166 11 141 81 91 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000008312   ⟹   ENSRNOP00000008312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl658,848,621 - 59,124,318 (+)Ensembl
mRatBN7.2 Ensembl653,121,438 - 53,397,028 (+)Ensembl
Rnor_6.0 Ensembl655,881,484 - 56,159,464 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000078548   ⟹   ENSRNOP00000073650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl658,848,621 - 59,103,592 (+)Ensembl
mRatBN7.2 Ensembl653,121,438 - 53,396,089 (+)Ensembl
Rnor_6.0 Ensembl655,881,387 - 56,055,489 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101778   ⟹   ENSRNOP00000086474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl658,848,621 - 59,181,406 (+)Ensembl
mRatBN7.2 Ensembl653,121,438 - 53,396,089 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104443   ⟹   ENSRNOP00000090565
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl658,848,621 - 59,124,318 (+)Ensembl
mRatBN7.2 Ensembl653,121,438 - 53,397,028 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109606   ⟹   ENSRNOP00000080108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl658,848,621 - 59,124,318 (+)Ensembl
mRatBN7.2 Ensembl653,121,438 - 53,397,028 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000129015   ⟹   ENSRNOP00000103215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl658,848,621 - 59,173,282 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000135152   ⟹   ENSRNOP00000111381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl658,848,621 - 59,124,116 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000169388   ⟹   ENSRNOP00000105836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl658,848,621 - 59,124,318 (+)Ensembl
RefSeq Acc Id: NM_001008386   ⟹   NP_001008387
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8658,848,724 - 59,124,309 (+)NCBI
mRatBN7.2653,121,438 - 53,397,030 (+)NCBI
Rnor_6.0655,881,484 - 56,159,466 (+)NCBI
Rnor_5.0665,490,939 - 65,818,620 (+)NCBI
RGSC_v3.4655,139,155 - 55,419,630 (+)RGD
Celera652,259,290 - 52,534,570 (+)RGD
Sequence:
RefSeq Acc Id: XM_039112669   ⟹   XP_038968597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8658,847,550 - 59,112,473 (+)NCBI
mRatBN7.2653,120,264 - 53,376,637 (+)NCBI
RefSeq Acc Id: XM_039112670   ⟹   XP_038968598
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8658,847,550 - 59,124,309 (+)NCBI
mRatBN7.2653,120,264 - 53,397,030 (+)NCBI
RefSeq Acc Id: XM_063262263   ⟹   XP_063118333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8658,847,550 - 58,912,557 (+)NCBI
RefSeq Acc Id: XR_005505559
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8658,847,550 - 58,958,140 (+)NCBI
mRatBN7.2653,120,264 - 53,230,849 (+)NCBI
RefSeq Acc Id: NP_001008387   ⟸   NM_001008386
- UniProtKB: Q5S6T4 (UniProtKB/Swiss-Prot),   Q5S6T3 (UniProtKB/Swiss-Prot),   A0A8I6AE23 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008312   ⟸   ENSRNOT00000008312
Ensembl Acc Id: ENSRNOP00000073650   ⟸   ENSRNOT00000078548
RefSeq Acc Id: XP_038968598   ⟸   XM_039112670
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038968597   ⟸   XM_039112669
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K627 (UniProtKB/TrEMBL),   A0A8I6AE23 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000090565   ⟸   ENSRNOT00000104443
Ensembl Acc Id: ENSRNOP00000080108   ⟸   ENSRNOT00000109606
Ensembl Acc Id: ENSRNOP00000086474   ⟸   ENSRNOT00000101778
RefSeq Acc Id: XP_063118333   ⟸   XM_063262263
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000103215   ⟸   ENSRNOT00000129015
Ensembl Acc Id: ENSRNOP00000105836   ⟸   ENSRNOT00000169388
Ensembl Acc Id: ENSRNOP00000111381   ⟸   ENSRNOT00000135152
Protein Domains
D-ribitol-5-phosphate cytidylyltransferase C-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5S6T3-F1-model_v2 AlphaFold Q5S6T3 1-447 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694568
Promoter ID:EPDNEW_R5088
Type:single initiation site
Name:Ispd_1
Description:isoprenoid synthase domain containing
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0655,881,383 - 55,881,443EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359368 AgrOrtholog
BioCyc Gene G2FUF-37790 BioCyc
BioCyc Pathway PWY-7981 [alpha-dystroglycan glycosylation] BioCyc
BioCyc Pathway Image PWY-7981 BioCyc
Ensembl Genes ENSRNOG00000006199 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000008312 ENTREZGENE
  ENSRNOT00000008312.5 UniProtKB/Swiss-Prot
  ENSRNOT00000078548 ENTREZGENE
Gene3D-CATH Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A UniProtKB/Swiss-Prot
InterPro IspD/TarI UniProtKB/Swiss-Prot
  ISPD_C UniProtKB/Swiss-Prot
  ISPD_synthase_CS UniProtKB/Swiss-Prot
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot
KEGG Report rno:493574 UniProtKB/Swiss-Prot
NCBI Gene 493574 ENTREZGENE
PANTHER D-RIBITOL-5-PHOSPHATE CYTIDYLYLTRANSFERASE UniProtKB/Swiss-Prot
  D-RIBITOL-5-PHOSPHATE CYTIDYLYLTRANSFERASE UniProtKB/Swiss-Prot
Pfam IspD UniProtKB/Swiss-Prot
  ISPD_C UniProtKB/Swiss-Prot
PhenoGen Crppa PhenoGen
PROSITE ISPD UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000006199 RatGTEx
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot
UniProt A0A0G2K627 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZPF4_RAT UniProtKB/TrEMBL
  A0A8I6A1A9_RAT UniProtKB/TrEMBL
  A0A8I6AE23 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LEX1_RAT UniProtKB/TrEMBL
  A0ABK0LPW2_RAT UniProtKB/TrEMBL
  A0ABK0M2T0_RAT UniProtKB/TrEMBL
  ISPD_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5S6T4 ENTREZGENE
UniProt Secondary Q5S6T4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Crppa  CDP-L-ribitol pyrophosphorylase A  Ispd  isoprenoid synthase domain containing  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-20 Ispd  isoprenoid synthase domain containing  LOC493574  notch1-induced protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC493574  notch1-induced protein      Symbol and Name status set to provisional 70820 PROVISIONAL