Zfand6 (zinc finger AN1-type containing 6) - Rat Genome Database

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Gene: Zfand6 (zinc finger AN1-type containing 6) Rattus norvegicus
Analyze
Symbol: Zfand6
Name: zinc finger AN1-type containing 6
RGD ID: 1359317
Description: Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in several processes, including cellular response to tumor necrosis factor; protein targeting to peroxisome; and regulation of canonical NF-kappaB signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Orthologous to human ZFAND6 (zinc finger AN1-type containing 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AN1-type zinc finger protein 6; MGC94805; protein associated with PRK1; Za20d3; zgc:101121; zinc finger A20 domain-containing protein 3; zinc finger, A20 domain containing 3; zinc finger, AN1-type domain 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81147,990,099 - 148,061,221 (-)NCBIGRCr8
mRatBN7.21138,581,002 - 138,652,052 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1138,581,002 - 138,651,939 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1146,533,717 - 146,604,324 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01153,702,718 - 153,773,333 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01146,577,924 - 146,648,533 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01146,745,850 - 146,823,762 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,745,859 - 146,823,762 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01147,672,431 - 147,750,196 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41140,885,701 - 140,960,486 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11140,964,112 - 141,038,892 (-)NCBI
Celera1130,599,032 - 130,612,301 (-)NCBICelera
Cytogenetic Map1q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfand6RatBloom syndrome  ISOZFAND6 (Homo sapiens)8554872ClinVar Annotator: match by term: Bloom syndromeClinVarPMID:28492532
Zfand6Ratcolorectal cancer  ISOZFAND6 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial colorectal cancerClinVarPMID:28492532
Zfand6Rattyrosinemia type I  ISOZFAND6 (Homo sapiens)8554872ClinVar Annotator: match by term: Tyrosinemia type IClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfand6RatArsenic Poisoning  ISOZFAND6 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16835338
Zfand6RatDelayed Emergence from Anesthesia  ISOZFAND6 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16115977
Zfand6Ratskin disease  ISOZFAND6 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16835338

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfand6Rat(-)-epigallocatechin 3-gallate multiple interactionsISOZFAND6 (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of ZFAND6 mRNACTDPMID:22079256
Zfand6Rat(-)-epigallocatechin 3-gallate decreases expressionISOZFAND6 (Homo sapiens)6480464epigallocatechin gallate results in decreased expression of ZFAND6 mRNACTDPMID:22079256
Zfand6Rat1,2-dimethylhydrazine multiple interactionsISOZfand6 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of ZFAND6 mRNACTDPMID:22206623
Zfand6Rat17beta-estradiol decreases expressionISOZFAND6 (Homo sapiens)6480464Estradiol results in decreased expression of ZFAND6 mRNACTDPMID:23019147
Zfand6Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of ZFAND6 mRNACTDPMID:21215274 and PMID:33387578
Zfand6Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOZfand6 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of ZFAND6 mRNACTDPMID:21570461
Zfand6Rat3,4-methylenedioxymethamphetamine increases expressionISOZfand6 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of ZFAND6 mRNACTDPMID:26251327
Zfand6Rat3H-1,2-dithiole-3-thione decreases expressionEXP 64804641 and 2-dithiol-3-thione results in decreased expression of ZFAND6 mRNACTDPMID:19162173
Zfand6Ratall-trans-retinoic acid increases expressionISOZFAND6 (Homo sapiens)6480464Tretinoin results in increased expression of ZFAND6 mRNACTDPMID:33167477
Zfand6Ratarsane decreases expressionISOZFAND6 (Homo sapiens)6480464Arsenic results in decreased expression of ZFAND6 mRNACTDPMID:16835338
Zfand6Ratarsane multiple interactionsISOZFAND6 (Homo sapiens)6480464[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of ZFAND6 mRNACTDPMID:39836092
Zfand6Ratarsenic atom decreases expressionISOZFAND6 (Homo sapiens)6480464Arsenic results in decreased expression of ZFAND6 mRNACTDPMID:16835338
Zfand6Ratarsenic atom multiple interactionsISOZFAND6 (Homo sapiens)6480464[sodium arsenite results in increased abundance of Arsenic] which results in increased expression of ZFAND6 mRNACTDPMID:39836092
Zfand6Ratarsenite(3-) multiple interactionsISOZFAND6 (Homo sapiens)6480464arsenite promotes the reaction [G3BP1 protein binds to ZFAND6 mRNA]CTDPMID:32406909
Zfand6Ratbenzo[a]pyrene increases expressionISOZfand6 (Mus musculus)6480464Benzo(a)pyrene results in increased expression of ZFAND6 mRNACTDPMID:22228805
Zfand6Ratbenzo[a]pyrene decreases methylationISOZFAND6 (Homo sapiens)6480464Benzo(a)pyrene results in decreased methylation of ZFAND6 5' UTRCTDPMID:27901495
Zfand6Ratbeta-lapachone increases expressionISOZFAND6 (Homo sapiens)6480464beta-lapachone results in increased expression of ZFAND6 mRNACTDPMID:38218311
Zfand6Ratbis(2-ethylhexyl) phthalate increases expressionISOZfand6 (Mus musculus)6480464Diethylhexyl Phthalate results in increased expression of ZFAND6 mRNACTDPMID:33754040
Zfand6Ratbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of ZFAND6 mRNACTDPMID:25181051
Zfand6Ratbisphenol A decreases expressionISOZFAND6 (Homo sapiens)6480464bisphenol A results in decreased expression of ZFAND6 mRNA and bisphenol A results in decreased expression of ZFAND6 proteinCTDPMID:36232920 and PMID:37567409

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Biological Process
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfand6Ratapoptotic process involved_inIEAUniProtKB-KW:KW-00531600115GO_REF:0000043UniProtGO_REF:0000043
Zfand6Ratcellular response to tumor necrosis factor involved_inISSUniProtKB:Q6FIF01600115GO_REF:0000024UniProtGO_REF:0000024
Zfand6Ratcellular response to tumor necrosis factor involved_inISOZFAND6 (Homo sapiens)1624291 PMID:21810480RGDPMID:21810480
Zfand6Ratnegative regulation of apoptotic process involved_inISSUniProtKB:Q6FIF01600115GO_REF:0000024UniProtGO_REF:0000024
Zfand6Ratnegative regulation of apoptotic process involved_inISOZFAND6 (Homo sapiens)1624291 PMID:21810480RGDPMID:21810480
Zfand6Ratprotein targeting to peroxisome involved_inISSUniProtKB:Q9DCH61600115GO_REF:0000024UniProtGO_REF:0000024
Zfand6Ratprotein targeting to peroxisome involved_inIEAUniProtKB:Q9DCH6 and ensembl:ENSMUSP000001465181600115GO_REF:0000107EnsemblGO_REF:0000107
Zfand6Ratprotein targeting to peroxisome involved_inIBAMGI:1929510 and PANTHER:PTN0025786571600115GO_REF:0000033GO_CentralGO_REF:0000033
Zfand6Ratprotein targeting to peroxisome involved_inISOZfand6 (Mus musculus)1624291 PMID:21980954RGDPMID:21980954
Zfand6Ratprotein transport involved_inIEAUniProtKB-KW:KW-06531600115GO_REF:0000043UniProtGO_REF:0000043
Zfand6Ratregulation of canonical NF-kappaB signal transduction involved_inISSUniProtKB:Q6FIF01600115GO_REF:0000024UniProtGO_REF:0000024
Zfand6Ratregulation of canonical NF-kappaB signal transduction involved_inISOZFAND6 (Homo sapiens)1624291 PMID:21810480RGDPMID:21810480
Zfand6Ratsignal transduction acts_upstream_of_or_withinISOZfand6 (Mus musculus)1624291UniProtKB:Q7TST2 and PMID:11054541RGDPMID:11054541
1 to 13 of 13 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Zfand6Ratcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Zfand6Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043

Molecular Function
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#
Reference Title
Reference Citation
1. Cloning and characterization of AWP1, a novel protein that associates with serine/threonine kinase PRK1 in vivo. Duan W, etal., Gene 2000 Oct 3;256(1-2):113-21.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
PMID:15489334   PMID:18813897   PMID:21810480   PMID:21980954   PMID:23336395   PMID:23481562   PMID:27716383  



Zfand6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81147,990,099 - 148,061,221 (-)NCBIGRCr8
mRatBN7.21138,581,002 - 138,652,052 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1138,581,002 - 138,651,939 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1146,533,717 - 146,604,324 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01153,702,718 - 153,773,333 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01146,577,924 - 146,648,533 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01146,745,850 - 146,823,762 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1146,745,859 - 146,823,762 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01147,672,431 - 147,750,196 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41140,885,701 - 140,960,486 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11140,964,112 - 141,038,892 (-)NCBI
Celera1130,599,032 - 130,612,301 (-)NCBICelera
Cytogenetic Map1q31NCBI
ZFAND6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381580,058,951 - 80,138,393 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1580,059,568 - 80,140,292 (+)EnsemblGRCh38hg38GRCh38
GRCh371580,352,018 - 80,430,735 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361578,139,076 - 78,217,767 (+)NCBINCBI36Build 36hg18NCBI36
Build 341578,139,075 - 78,217,765NCBI
Celera1557,289,219 - 57,367,921 (+)NCBICelera
Cytogenetic Map15q25.1NCBI
HuRef1557,109,927 - 57,188,777 (+)NCBIHuRef
CHM1_11580,469,860 - 80,548,702 (+)NCBICHM1_1
T2T-CHM13v2.01577,923,092 - 78,001,808 (+)NCBIT2T-CHM13v2.0
Zfand6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39784,264,253 - 84,339,224 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl784,262,974 - 84,339,167 (-)EnsemblGRCm39 Ensembl
GRCm38784,615,045 - 84,690,016 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl784,613,766 - 84,689,959 (-)EnsemblGRCm38mm10GRCm38
MGSCv37791,763,564 - 91,827,861 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36784,491,239 - 84,555,536 (-)NCBIMGSCv36mm8
Celera782,017,675 - 82,086,800 (-)NCBICelera
Cytogenetic Map7D3NCBI
cM Map748.36NCBI
Zfand6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955533877,985 - 894,934 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955533823,883 - 895,713 (+)NCBIChiLan1.0ChiLan1.0
ZFAND6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21669,306,795 - 69,392,607 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11573,471,591 - 73,557,324 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01559,023,678 - 59,107,270 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11577,996,265 - 78,067,171 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1578,048,571 - 78,115,098 (+)Ensemblpanpan1.1panPan2
ZFAND6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1357,341,757 - 57,406,205 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl357,342,448 - 57,406,182 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha360,000,188 - 60,064,463 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0357,768,504 - 57,833,026 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl357,768,543 - 57,823,947 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1357,274,102 - 57,338,400 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0357,480,865 - 57,545,311 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0357,827,874 - 57,892,235 (-)NCBIUU_Cfam_GSD_1.0
Zfand6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640120,215,856 - 120,279,115 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647138,063,981 - 38,127,191 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647138,063,932 - 38,127,190 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFAND6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl748,967,579 - 49,034,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1748,967,402 - 49,034,711 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2754,475,829 - 54,542,954 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZFAND6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1263,274,721 - 3,356,873 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl263,274,194 - 3,314,527 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048138,518,274 - 138,601,371 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfand6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624941967,345 - 1,027,018 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624941953,407 - 1,025,082 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Zfand6
263 total Variants

Predicted Target Of
Summary Value
Count of predictions:398
Count of miRNA genes:217
Interacting mature miRNAs:260
Transcripts:ENSRNOT00000018098
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


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The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
9590300Scort16Serum corticosterone level QTL 164.390.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1103111621148111621Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat

1 to 10 of 64 rows
D1Got126  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21138,653,598 - 138,653,747 (+)MAPPERmRatBN7.2
Rnor_6.01146,837,765 - 146,837,913NCBIRnor6.0
Rnor_6.01146,824,360 - 146,824,508NCBIRnor6.0
Rnor_5.01147,764,387 - 147,764,535UniSTSRnor5.0
Rnor_5.01147,750,794 - 147,750,942UniSTSRnor5.0
RGSC_v3.41140,962,153 - 140,962,302RGDRGSC3.4
RGSC_v3.41140,962,154 - 140,962,302UniSTSRGSC3.4
RGSC_v3.11141,040,560 - 141,040,708RGD
Celera1130,671,119 - 130,671,267UniSTS
RH 3.4 Map11108.2UniSTS
RH 3.4 Map11108.2RGD
RH 2.0 Map1717.9RGD
Cytogenetic Map1q31UniSTS
D1Got131  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21138,631,855 - 138,632,048 (+)MAPPERmRatBN7.2
Rnor_6.01146,803,673 - 146,803,865NCBIRnor6.0
Rnor_5.01147,730,107 - 147,730,299UniSTSRnor5.0
RGSC_v3.41140,940,396 - 140,940,589RGDRGSC3.4
RGSC_v3.41140,940,397 - 140,940,589UniSTSRGSC3.4
RGSC_v3.11141,018,802 - 141,018,995RGD
Celera1130,649,738 - 130,649,908UniSTS
RH 3.4 Map11110.2RGD
RH 3.4 Map11110.2UniSTS
Cytogenetic Map1q31UniSTS
RH128267  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21138,581,136 - 138,581,334 (+)MAPPERmRatBN7.2
Rnor_6.01146,745,985 - 146,746,182NCBIRnor6.0
Rnor_5.04232,077,651 - 232,078,053UniSTSRnor5.0
Rnor_5.01147,672,566 - 147,672,763UniSTSRnor5.0
RGSC_v3.41140,885,836 - 140,886,033UniSTSRGSC3.4
Celera1130,599,167 - 130,599,364UniSTS
Cytogenetic Map1q31UniSTS
RH137620  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21138,608,612 - 138,608,777 (+)MAPPERmRatBN7.2
Rnor_6.01146,773,467 - 146,773,631NCBIRnor6.0
Rnor_5.01147,700,193 - 147,700,357UniSTSRnor5.0
RGSC_v3.41140,913,269 - 140,913,433UniSTSRGSC3.4
Celera1130,626,636 - 130,626,800UniSTS
Cytogenetic Map1q31UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 30 of 30 rows
RefSeq Transcripts NM_001007630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006229508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC076394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 30 rows

Ensembl Acc Id: ENSRNOT00000018098   ⟹   ENSRNOP00000018098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1138,581,016 - 138,651,939 (-)Ensembl
Rnor_6.0 Ensembl1146,745,859 - 146,823,762 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099671   ⟹   ENSRNOP00000088600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1138,581,015 - 138,640,796 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100459   ⟹   ENSRNOP00000095451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1138,581,002 - 138,640,760 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119528   ⟹   ENSRNOP00000078169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1138,581,016 - 138,651,939 (-)Ensembl
RefSeq Acc Id: NM_001007630   ⟹   NP_001007631
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,061,044 (-)NCBI
mRatBN7.21138,581,002 - 138,651,946 (-)NCBI
Rnor_6.01146,745,850 - 146,823,762 (-)NCBI
Rnor_5.01147,672,431 - 147,750,196 (-)NCBI
RGSC_v3.41140,885,701 - 140,960,486 (-)RGD
Celera1130,599,032 - 130,612,301 (-)RGD
Sequence:
RefSeq Acc Id: XM_006229499   ⟹   XP_006229561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,061,113 (-)NCBI
mRatBN7.21138,581,002 - 138,651,987 (-)NCBI
Rnor_6.01146,745,850 - 146,823,758 (-)NCBI
Rnor_5.01147,672,431 - 147,750,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229500   ⟹   XP_006229562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,050,416 (-)NCBI
mRatBN7.21138,581,002 - 138,641,097 (-)NCBI
Rnor_6.01146,745,850 - 146,813,727 (-)NCBI
Rnor_5.01147,672,431 - 147,750,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229502   ⟹   XP_006229564
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,050,416 (-)NCBI
mRatBN7.21138,581,002 - 138,641,097 (-)NCBI
Rnor_6.01146,745,850 - 146,813,727 (-)NCBI
Rnor_5.01147,672,431 - 147,750,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229504   ⟹   XP_006229566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,050,416 (-)NCBI
mRatBN7.21138,581,002 - 138,641,097 (-)NCBI
Rnor_6.01146,745,850 - 146,813,727 (-)NCBI
Rnor_5.01147,672,431 - 147,750,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229505   ⟹   XP_006229567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,061,141 (-)NCBI
mRatBN7.21138,581,002 - 138,652,043 (-)NCBI
Rnor_6.01146,745,850 - 146,823,758 (-)NCBI
Rnor_5.01147,672,431 - 147,750,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229506   ⟹   XP_006229568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,050,416 (-)NCBI
mRatBN7.21138,581,002 - 138,641,131 (-)NCBI
Rnor_6.01146,745,850 - 146,813,727 (-)NCBI
Rnor_5.01147,672,431 - 147,750,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229507   ⟹   XP_006229569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,061,221 (-)NCBI
mRatBN7.21138,581,002 - 138,652,052 (-)NCBI
Rnor_6.01146,745,850 - 146,823,758 (-)NCBI
Rnor_5.01147,672,431 - 147,750,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006229508   ⟹   XP_006229570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,050,416 (-)NCBI
mRatBN7.21138,581,002 - 138,641,117 (-)NCBI
Rnor_6.01146,745,850 - 146,813,727 (-)NCBI
Rnor_5.01147,672,431 - 147,750,196 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017588943   ⟹   XP_017444432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,061,113 (-)NCBI
mRatBN7.21138,581,002 - 138,651,987 (-)NCBI
Rnor_6.01146,745,850 - 146,823,758 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105745   ⟹   XP_038961673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,050,416 (-)NCBI
mRatBN7.21138,581,002 - 138,641,097 (-)NCBI
RefSeq Acc Id: XM_039105750   ⟹   XP_038961678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,061,212 (-)NCBI
mRatBN7.21138,581,002 - 138,651,984 (-)NCBI
RefSeq Acc Id: XM_063284809   ⟹   XP_063140879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,014,053 (-)NCBI
RefSeq Acc Id: XM_063284824   ⟹   XP_063140894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,061,113 (-)NCBI
RefSeq Acc Id: XM_063284825   ⟹   XP_063140895
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,061,111 (-)NCBI
RefSeq Acc Id: XM_063284837   ⟹   XP_063140907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,061,113 (-)NCBI
RefSeq Acc Id: XM_063284839   ⟹   XP_063140909
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,061,113 (-)NCBI
RefSeq Acc Id: XM_063284840   ⟹   XP_063140910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,061,113 (-)NCBI
RefSeq Acc Id: XM_063284841   ⟹   XP_063140911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,061,111 (-)NCBI
RefSeq Acc Id: XM_063284842   ⟹   XP_063140912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,050,416 (-)NCBI
RefSeq Acc Id: XM_063284851   ⟹   XP_063140921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,014,053 (-)NCBI
RefSeq Acc Id: XM_063284852   ⟹   XP_063140922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,061,141 (-)NCBI
RefSeq Acc Id: XM_063284854   ⟹   XP_063140924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,061,113 (-)NCBI
RefSeq Acc Id: XM_063284856   ⟹   XP_063140926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81147,990,099 - 148,061,113 (-)NCBI
1 to 30 of 34 rows
Protein RefSeqs NP_001007631 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229561 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229562 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229564 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229566 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229567 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229568 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229569 (Get FASTA)   NCBI Sequence Viewer  
  XP_006229570 (Get FASTA)   NCBI Sequence Viewer  
  XP_017444432 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961673 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961678 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140879 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140894 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140895 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140907 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140909 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140910 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140911 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140912 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140921 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140922 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140924 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140926 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH76394 (Get FASTA)   NCBI Sequence Viewer  
  EDM08768 (Get FASTA)   NCBI Sequence Viewer  
  EDM08769 (Get FASTA)   NCBI Sequence Viewer  
  EDM08770 (Get FASTA)   NCBI Sequence Viewer  
  EDM08771 (Get FASTA)   NCBI Sequence Viewer  
  EDM08772 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 34 rows
1 to 5 of 28 rows
1 to 5 of 28 rows
RefSeq Acc Id: NP_001007631   ⟸   NM_001007630
- UniProtKB: Q6DGF4 (UniProtKB/Swiss-Prot),   A6JCP3 (UniProtKB/TrEMBL),   A0A8I5YCN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229561   ⟸   XM_006229499
- Peptide Label: isoform X1
- UniProtKB: Q6DGF4 (UniProtKB/Swiss-Prot),   A6JCP3 (UniProtKB/TrEMBL),   A0A8I5YCN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229567   ⟸   XM_006229505
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AJP8 (UniProtKB/TrEMBL),   A0A8I5YCN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229569   ⟸   XM_006229507
- Peptide Label: isoform X3
- UniProtKB: A6JCP2 (UniProtKB/TrEMBL),   A0A8I6A8E7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006229568   ⟸   XM_006229506
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AJP8 (UniProtKB/TrEMBL),   A0A8I5YCN4 (UniProtKB/TrEMBL)
- Sequence:
A20-type   AN1-type

Name Modeler Protein Id AA Range Protein Structure
AF-Q6DGF4-F1-model_v2 AlphaFold Q6DGF4 1-223 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13690171
Promoter ID:EPDNEW_R695
Type:multiple initiation site
Name:Zfand6_1
Description:zinc finger AN1-type containing 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01146,823,729 - 146,823,789EPDNEW


1 to 33 of 33 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-58648 BioCyc
Ensembl Genes ENSRNOG00000013506 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000018098.6 UniProtKB/Swiss-Prot
  ENSRNOT00000099671 ENTREZGENE
  ENSRNOT00000100459 ENTREZGENE
Gene3D-CATH 1.20.5.4770 UniProtKB/Swiss-Prot
  4.10.1110.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7107784 IMAGE-MGC_LOAD
InterPro AN1-like_Znf UniProtKB/Swiss-Prot
  AN1_A20_ZnFinger UniProtKB/Swiss-Prot
  Znf_A20 UniProtKB/Swiss-Prot
  Znf_AN1 UniProtKB/Swiss-Prot
KEGG Report rno:293067 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94805 IMAGE-MGC_LOAD
NCBI Gene 293067 ENTREZGENE
PANTHER AN1-TYPE ZINC FINGER PROTEIN UniProtKB/Swiss-Prot
  AN1-TYPE ZINC FINGER PROTEIN 6 UniProtKB/Swiss-Prot
Pfam zf-A20 UniProtKB/Swiss-Prot
  zf-AN1 UniProtKB/Swiss-Prot
PhenoGen Zfand6 PhenoGen
PROSITE ZF_A20 UniProtKB/Swiss-Prot
  ZF_AN1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000013506 RatGTEx
SMART ZnF_A20 UniProtKB/Swiss-Prot
  ZnF_AN1 UniProtKB/Swiss-Prot
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot
  SSF118310 UniProtKB/Swiss-Prot
UniProt A0A8I5YCN4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A8E7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AJP8 ENTREZGENE, UniProtKB/TrEMBL
  A6JCP2 ENTREZGENE, UniProtKB/TrEMBL
  A6JCP3 ENTREZGENE, UniProtKB/TrEMBL
  Q6DGF4 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 33 of 33 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Zfand6  zinc finger AN1-type containing 6  Zfand6  zinc finger, AN1-type domain 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Zfand6  zinc finger, AN1-type domain 6  Za20d3  zinc finger, A20 domain containing 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Za20d3  zinc finger, A20 domain containing 3  zgc:101121  protein associated with PRK1  Symbol and Name updated 1299863 APPROVED
2005-07-29 zgc:101121  protein associated with PRK1      Symbol and Name status set to provisional 70820 PROVISIONAL