Ydjc (YdjC chitooligosaccharide deacetylase homolog)

Gene: Ydjc (YdjC chitooligosaccharide deacetylase homolog) Rattus norvegicus

Analyze

Symbol:

Ydjc

Name:

YdjC chitooligosaccharide deacetylase homolog

RGD ID:

1359227

Description:

Predicted to enable deacetylase activity. Predicted to be involved in carbohydrate metabolic process. Orthologous to human YDJC (YdjC chitooligosaccharide deacetylase homolog); INTERACTS WITH (+)-schisandrin B; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

carbohydrate deacetylase; hypothetical LOC287938; LOC287938; UPF0249 protein ydjC homolog; YdjC homolog; YdjC homolog (bacterial)

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	97,338,529 - 97,348,909 (-)	NCBI		GRCr8
mRatBN7.2	11	83,832,177 - 83,844,691 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	83,841,306 - 83,846,336 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	92,571,489 - 92,573,318 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	85,232,631 - 85,234,460 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	84,286,210 - 84,288,039 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	88,089,142 - 88,094,254 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	88,090,921 - 88,093,516 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	91,135,410 - 91,146,385 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	85,845,500 - 85,848,083 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	85,886,097 - 85,888,680 (-)	NCBI
Celera	11	82,603,512 - 82,605,347 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 22q11.2 deletion syndrome, distal (ISO)

DiGeorge syndrome (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (EXP,ISO)

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-palmitoylglycerol (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP,ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

dibutyl phthalate (EXP,ISO)

diuron (ISO)

doxorubicin (ISO)

fenvalerate (EXP)

folic acid (ISO)

furan (EXP)

indometacin (ISO)

methotrexate (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

temozolomide (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (EXP)

trimellitic anhydride (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

diacetylchitobiose catabolic process (IEA)

Molecular Function

deacetylase activity (IBA)

metal ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Ydjc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	97,338,529 - 97,348,909 (-)	NCBI		GRCr8
mRatBN7.2	11	83,832,177 - 83,844,691 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	83,841,306 - 83,846,336 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	92,571,489 - 92,573,318 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	85,232,631 - 85,234,460 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	84,286,210 - 84,288,039 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	88,089,142 - 88,094,254 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	88,090,921 - 88,093,516 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	91,135,410 - 91,146,385 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	85,845,500 - 85,848,083 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	85,886,097 - 85,888,680 (-)	NCBI
Celera	11	82,603,512 - 82,605,347 (-)	NCBI		Celera
Cytogenetic Map	11	q23	NCBI

YDJC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	21,628,089 - 21,630,022 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	21,628,089 - 21,630,064 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	21,982,378 - 21,984,311 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	20,312,378 - 20,314,340 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	22	5,799,918 - 5,801,880 (-)	NCBI		Celera
Cytogenetic Map	22	q11.21	NCBI
HuRef	22	4,940,252 - 4,942,214 (-)	NCBI		HuRef
CHM1_1	22	21,982,576 - 21,984,538 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	22,041,573 - 22,043,506 (-)	NCBI		T2T-CHM13v2.0

Ydjc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	16,964,813 - 16,966,721 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	16,962,485 - 16,978,565 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	17,146,949 - 17,148,857 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	17,144,621 - 17,160,701 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	17,147,072 - 17,148,936 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	17,060,542 - 17,062,406 (+)	NCBI		MGSCv36	mm8
Celera	16	17,719,757 - 17,721,621 (+)	NCBI		Celera
Cytogenetic Map	16	A3	NCBI
cM Map	16	10.63	NCBI

Ydjc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	17,482,020 - 17,484,853 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	17,481,581 - 17,483,858 (+)	NCBI	ChiLan1.0	ChiLan1.0

YDJC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	31,173,298 - 31,175,877 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	33,722,025 - 33,724,124 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	3,750,719 - 3,752,990 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	20,233,969 - 20,236,172 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	20,233,969 - 20,236,176 (-)	Ensembl	panpan1.1		panPan2

YDJC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	30,904,103 - 30,906,015 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	30,904,718 - 30,905,951 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	30,861,431 - 30,863,326 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	32,309,921 - 32,311,816 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	32,310,196 - 32,311,744 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	30,359,251 - 30,361,153 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	29,983,002 - 29,984,885 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	31,072,890 - 31,074,806 (-)	NCBI		UU_Cfam_GSD_1.0

Ydjc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	140,687,030 - 140,688,920 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936619	2,065,193 - 2,066,667 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936619	2,065,118 - 2,067,032 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

YDJC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	50,260,788 - 50,262,550 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	50,260,813 - 50,262,553 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	53,711,336 - 53,713,076 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

YDJC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	4,479,690 - 4,481,915 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	4,479,985 - 4,481,586 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666085	2,517,263 - 2,519,349 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ydjc
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	1,181,956 - 1,183,485 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	1,181,617 - 1,183,581 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ydjc
46 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	72
Count of miRNA genes:	61
Interacting mature miRNAs:	69
Transcripts:	ENSRNOT00000002542
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724554	Iddm17	Insulin dependent diabetes mellitus QTL 17		0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	18976208	86241447	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	54457534	86241447	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	56351424	86241447	Rat
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	60346590	86241447	Rat
634339	Niddm50	Non-insulin dependent diabetes mellitus QTL 50	3.32		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	66422148	86241447	Rat
1354593	Stl12	Serum triglyceride level QTL 12	3.36		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	11	66422148	86241447	Rat

Markers in Region

BE107630

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	83,841,338 - 83,841,497 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	88,090,954 - 88,091,112	NCBI	Rnor6.0
Rnor_5.0	11	91,143,107 - 91,143,265	UniSTS	Rnor5.0
RGSC_v3.4	11	85,845,521 - 85,845,679	UniSTS	RGSC3.4
Celera	11	82,603,545 - 82,603,703	UniSTS
RH 3.4 Map	11	721.21	UniSTS
Cytogenetic Map	11	q23	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			2						52		11	1
Low	3	43	33	19	19	19	1	1	22	35	30	10	1
Below cutoff			20	20		20	7	9					7

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005490989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005490990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010055937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000002542 ⟹ ENSRNOP00000002542

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	83,841,306 - 83,843,141 (-)	Ensembl
Rnor_6.0 Ensembl	11	88,090,921 - 88,092,756 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000078394 ⟹ ENSRNOP00000070207

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	83,841,321 - 83,843,902 (-)	Ensembl
Rnor_6.0 Ensembl	11	88,090,934 - 88,093,516 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000107793 ⟹ ENSRNOP00000078698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	83,842,359 - 83,843,141 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113517 ⟹ ENSRNOP00000096206

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	83,841,306 - 83,843,257 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000115656 ⟹ ENSRNOP00000083127

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	83,841,306 - 83,846,336 (-)	Ensembl

RefSeq Acc Id:

NM_001013863 ⟹ NP_001013885

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,345,528 - 97,347,363 (-)	NCBI
mRatBN7.2	11	83,841,306 - 83,843,141 (-)	NCBI
Rnor_6.0	11	88,090,921 - 88,092,756 (-)	NCBI
Rnor_5.0	11	91,135,410 - 91,146,385 (-)	NCBI
RGSC_v3.4	11	85,845,500 - 85,848,083 (-)	RGD
Celera	11	82,603,512 - 82,605,347 (-)	NCBI

Sequence:

show sequence

CCAGGATTTGGCAGCCATGGCTTTTCCCCGCGTGCGGCTGGTTGTCACCGCTGATGACTTTGGT
TATTGCCCGCGGCGGGATGAGGGCATCGTGGAGGCCTTCCTGGCAGGAACTGTGACCAGCGTGT
CACTGCTGGTCAACGGCACAGCCGCAGAGAGCGCGGCCGAGCTGGCCCGCAGGCACAGCATTCC
CACGGGTCTCCACGCCAACCTGTCTGAGGGCCGTCCGGTGGGCCCGGCCCGCCACAACGCCTCG
TCGCTCCTCAGTCCGGAAGGCTTCTTTCTTGGCAAGATGGGATTTCGAGAGGCCTTAGCGGCTG
GAGACGTTGCTTTGCCCCAGGTGCGGGAGGAGCTAGAAGCTCAACTCAGCCGCTTCCGGGAGTT
GTTGGGCAAGTCCCCCACGCACGTGGACGGTCACCAGCACGTGCACGTGCTCCCAGGCGTGTGT
CAGGTGTTCGCCGAGGCTTTGCAGGAGTACGGGGTCCGCTTCACACGGCTGCCGGCAGAACGTG
GCGTGGGCAGCTGCGCGTGGCTCGAAGCGCCAGCGCGCGCCTTCGCCTGCACTGTGGAGCGCGA
TGCCCGGGCCGCCATCGGTCCCTTCTCTCGCCACGGCCTGCGGTGGACCGATGCCTTTGTGGGC
CTGAGCACTTGTGGCCGGCATATGTCTGCTCACCGAGTCTTGGGATCACTGGCGCGAGCCCTAG
AAGATATCCCTGCTGGCCACGCCCTGACTGCCGAGCTGATGGCACACCCCGGATACCCCAGTGT
GCCTCCAGCAGGGGGCTGCGGTGAGGGCCCAGATGCATTCTCTTGTTCTTGGGAGAGGCTGCAT
GAGCTGCACGTTCTCACAGCACCCACTTTGAGGGCTTGGCTGGCCCAAAATGGTGTGCAGCTCT
GCGCCATAGACGACCTGGATTCCAAAAGGCCAGGGGAAGGGGTTCCCTTGTGAGGCAACTCTGG
AACCTTTCTTGGAGCCTTCCCGTCTCTGACACCGAAGGCCAGCTACAAACTGCCTAATCACTAT
GAAGGCCAGGGCTAAAAGCCTGACTAACCCTGTTCCCAGGTCCTTTAGGCTGAGTAGAAGGCCG
ACCTTGGGCAGCCTTGCCTGGCTGCAGGCAGGCCCAGTCTGACATCGGGACGTAAGGCCAGCTG
AGCATTTATTTGGTGCCCGTTCATGTGACATTTGTAACCACTTGTTTAAGAGCAGTGGGAAGAG
GTTGGTGTGTTAATAAAATAACGTCTTTCAGATTTGGCTGGTTT

hide sequence

RefSeq Acc Id:

XM_039088068 ⟹ XP_038943996

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,345,540 - 97,347,347 (-)	NCBI
mRatBN7.2	11	83,841,318 - 83,844,686 (-)	NCBI

RefSeq Acc Id:

XM_039088070 ⟹ XP_038943998

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,338,529 - 97,347,347 (-)	NCBI
mRatBN7.2	11	83,839,527 - 83,843,153 (-)	NCBI

RefSeq Acc Id:

XM_039088071 ⟹ XP_038943999

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,345,540 - 97,348,909 (-)	NCBI
mRatBN7.2	11	83,841,318 - 83,844,686 (-)	NCBI

RefSeq Acc Id:

XM_039088072 ⟹ XP_038944000

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,345,540 - 97,348,909 (-)	NCBI
mRatBN7.2	11	83,841,318 - 83,844,686 (-)	NCBI

RefSeq Acc Id:

XM_063270323 ⟹ XP_063126393

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,338,529 - 97,347,347 (-)	NCBI

RefSeq Acc Id:

XR_005490989

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,338,529 - 97,347,347 (-)	NCBI
mRatBN7.2	11	83,832,177 - 83,843,153 (-)	NCBI

RefSeq Acc Id:

XR_005490990

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,338,529 - 97,347,347 (-)	NCBI
mRatBN7.2	11	83,832,177 - 83,843,153 (-)	NCBI

RefSeq Acc Id:

XR_010055937

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	97,338,529 - 97,348,909 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001013885	(Get FASTA)	NCBI Sequence Viewer
	XP_038943996	(Get FASTA)	NCBI Sequence Viewer
	XP_038943998	(Get FASTA)	NCBI Sequence Viewer
	XP_038943999	(Get FASTA)	NCBI Sequence Viewer
	XP_038944000	(Get FASTA)	NCBI Sequence Viewer
	XP_063126393	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86565	(Get FASTA)	NCBI Sequence Viewer
	EDL77879	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002542
	ENSRNOP00000002542.4
	ENSRNOP00000070207.1
	ENSRNOP00000078698.1
	ENSRNOP00000083127
	ENSRNOP00000083127.1
	ENSRNOP00000096206.1

RefSeq Acc Id:

NP_001013885 ⟸ NM_001013863

- UniProtKB:

A6JSM8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAFPRVRLVVTADDFGYCPRRDEGIVEAFLAGTVTSVSLLVNGTAAESAAELARRHSIPTGLHA
NLSEGRPVGPARHNASSLLSPEGFFLGKMGFREALAAGDVALPQVREELEAQLSRFRELLGKSP
THVDGHQHVHVLPGVCQVFAEALQEYGVRFTRLPAERGVGSCAWLEAPARAFACTVERDARAAI
GPFSRHGLRWTDAFVGLSTCGRHMSAHRVLGSLARALEDIPAGHALTAELMAHPGYPSVPPAGG
CGEGPDAFSCSWERLHELHVLTAPTLRAWLAQNGVQLCAIDDLDSKRPGEGVPL

hide sequence

RefSeq Acc Id:

ENSRNOP00000002542 ⟸ ENSRNOT00000002542

RefSeq Acc Id:

ENSRNOP00000070207 ⟸ ENSRNOT00000078394

RefSeq Acc Id:	XP_038943998 ⟸ XM_039088070
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038944000 ⟸ XM_039088072
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZWK3 (UniProtKB/TrEMBL), Q5RJN8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038943999 ⟸ XM_039088071
- Peptide Label:	isoform X4
- UniProtKB:	Q5RJN8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038943996 ⟸ XM_039088068
- Peptide Label:	isoform X1
- UniProtKB:	G3V683 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000083127 ⟸ ENSRNOT00000115656

RefSeq Acc Id:

ENSRNOP00000078698 ⟸ ENSRNOT00000107793

RefSeq Acc Id:

ENSRNOP00000096206 ⟸ ENSRNOT00000113517

RefSeq Acc Id:	XP_063126393 ⟸ XM_063270323
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V683-F1-model_v2	AlphaFold	G3V683	1-310	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698334

Promoter ID:

EPDNEW_R8859

Type:

initiation region

Name:

Ydjc_1

Description:

YdjC chitooligosaccharide deacetylase homolog

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	88,092,752 - 88,092,812	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359227	AgrOrtholog
BioCyc Gene	G2FUF-20577	BioCyc
Ensembl Genes	ENSRNOG00000001861	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000002542.7	UniProtKB/TrEMBL
	ENSRNOT00000078394.2	UniProtKB/TrEMBL
	ENSRNOT00000107793.1	UniProtKB/TrEMBL
	ENSRNOT00000113517.1	UniProtKB/TrEMBL
	ENSRNOT00000115656.1	UniProtKB/TrEMBL
Gene3D-CATH	Glycoside hydrolase/deacetylase	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7113479	IMAGE-MGC_LOAD
InterPro	Glyco_hydro/deAcase_b/a-brl	UniProtKB/TrEMBL
	Uncharacterised_UPF0249/HpnK	UniProtKB/TrEMBL
KEGG Report	rno:287938	UniProtKB/TrEMBL
MGC_CLONE	MGC:105851	IMAGE-MGC_LOAD
NCBI Gene	287938	ENTREZGENE
PANTHER	CARBOHYDRATE DEACETYLASE	UniProtKB/TrEMBL
	PTHR31609	UniProtKB/TrEMBL
Pfam	YdjC	UniProtKB/TrEMBL
PhenoGen	Ydjc	PhenoGen
RatGTEx	ENSRNOG00000001861	RatGTEx
Superfamily-SCOP	SSF88713	UniProtKB/TrEMBL
UniProt	A0A8I5ZLC0_RAT	UniProtKB/TrEMBL
	A0A8I5ZWK3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AQH8_RAT	UniProtKB/TrEMBL
	A6JSM8	ENTREZGENE, UniProtKB/TrEMBL
	G3V683	ENTREZGENE, UniProtKB/TrEMBL
	Q5RJN8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-04-05	Ydjc	YdjC chitooligosaccharide deacetylase homolog	Ydjc	YdjC homolog (bacterial)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-31	Ydjc	YdjC homolog (bacterial)	LOC287938	hypothetical LOC287938	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-29	LOC287938	hypothetical LOC287938			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar