Krt80 (keratin 80) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Krt80 (keratin 80) Rattus norvegicus
Analyze
Symbol: Krt80
Name: keratin 80
RGD ID: 1359177
Description: Predicted to be a structural constituent of skin epidermis. Predicted to be involved in intermediate filament organization and keratinization. Predicted to be located in cytoplasm and intermediate filament. Predicted to be active in keratin filament. Orthologous to human KRT80 (keratin 80); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CK-80; cytokeratin-80; K80; Kb2; Kb20; keratin 80, type II; keratin, type II cytoskeletal 80; keratin-80; type II keratin Kb20; type II keratin-20; type-II keratin Kb20
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,341,951 - 134,363,872 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7134,341,956 - 134,364,211 (-)EnsemblGRCr8
mRatBN7.27132,463,216 - 132,485,134 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7132,463,218 - 132,485,508 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7134,266,548 - 134,286,776 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07136,496,053 - 136,516,283 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07136,405,779 - 136,426,014 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07142,995,715 - 143,015,932 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,994,119 - 143,016,040 (-)Ensemblrn6Rnor6.0
Rnor_5.07140,796,567 - 140,816,784 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47140,096,091 - 140,115,890 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7128,929,953 - 128,950,211 (-)NCBICelera
RGSC_v3.17140,172,527 - 140,192,327 (-)NCBI
Cytogenetic Map7q36NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,6-dimethoxyphenol  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
7,12-dimethyltetraphene  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
Archazolid B  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethylparaben  (ISO)
etoposide  (ISO)
furfural  (ISO)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
hydroquinone  (ISO)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
metformin  (ISO)
methamphetamine  (EXP)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
N-nitrosodiethylamine  (ISO)
nicotine  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
propanal  (ISO)
rac-lactic acid  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP,ISO)
valproic acid  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Comprehensive analysis of keratin gene clusters in humans and rodents. Hesse M, etal., Eur J Cell Biol 2004 Feb;83(1):19-26.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20843789  


Genomics

Comparative Map Data
Krt80
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87134,341,951 - 134,363,872 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7134,341,956 - 134,364,211 (-)EnsemblGRCr8
mRatBN7.27132,463,216 - 132,485,134 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7132,463,218 - 132,485,508 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7134,266,548 - 134,286,776 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07136,496,053 - 136,516,283 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07136,405,779 - 136,426,014 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07142,995,715 - 143,015,932 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,994,119 - 143,016,040 (-)Ensemblrn6Rnor6.0
Rnor_5.07140,796,567 - 140,816,784 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47140,096,091 - 140,115,890 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7128,929,953 - 128,950,211 (-)NCBICelera
RGSC_v3.17140,172,527 - 140,192,327 (-)NCBI
Cytogenetic Map7q36NCBI
KRT80
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,168,996 - 52,192,014 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1252,168,996 - 52,192,014 (-)Ensemblhg38GRCh38
GRCh371252,562,780 - 52,585,798 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361250,849,047 - 50,872,051 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1251,365,224 - 51,388,227 (-)NCBICelera
Cytogenetic Map12q13.13NCBI
HuRef1249,596,065 - 49,619,064 (-)NCBIHuRef
CHM1_11252,529,044 - 52,552,043 (-)NCBICHM1_1
T2T-CHM13v2.01252,132,581 - 52,155,594 (-)NCBIT2T-CHM13v2.0
Krt80
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915101,246,196 - 101,268,043 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl15101,245,325 - 101,268,043 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3815101,348,315 - 101,370,162 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15101,347,444 - 101,370,162 (-)Ensemblmm10GRCm38
MGSCv3715101,180,002 - 101,200,556 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3615101,175,481 - 101,198,366 (-)NCBIMGSCv36mm8
Celera15103,497,804 - 103,518,340 (-)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.78NCBI
Krt80
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555472,511,235 - 2,531,630 (-)Ensembl
ChiLan1.0NW_0049555472,511,235 - 2,531,631 (-)NCBIChiLan1.0ChiLan1.0
KRT80
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21042,003,383 - 42,026,325 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11242,000,161 - 42,023,088 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01236,561,484 - 36,593,887 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11237,348,186 - 37,371,250 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1237,348,186 - 37,371,250 (+)EnsemblpanPan2panpan1.1
KRT80
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,862,179 - 2,883,727 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,860,735 - 2,884,680 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2743,371,083 - 43,392,776 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0272,860,345 - 2,882,050 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,859,091 - 2,882,086 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,877,103 - 2,898,785 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,863,095 - 2,884,772 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02743,769,282 - 43,790,971 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Krt80
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494563,565,725 - 63,587,967 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365129,576,851 - 9,599,037 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365129,576,867 - 9,599,050 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KRT80
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl517,482,460 - 17,508,513 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1517,482,454 - 17,506,462 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KRT80
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11148,316,539 - 48,339,552 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1148,315,946 - 48,338,923 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037197,752,635 - 197,775,923 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Krt80
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624816177,066 - 197,698 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624816176,804 - 197,612 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Krt80
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11261,721,032 - 261,741,309 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Krt80
32 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:95
Count of miRNA genes:79
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000029697
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)7132099939137014596Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7119280025135560836Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 11 66 118 60 63 32 56 32 6 287 150 9 101 81 92 31 5 5

Sequence


Ensembl Acc Id: ENSRNOT00000029697   ⟹   ENSRNOP00000038848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7134,341,956 - 134,364,211 (-)Ensembl
mRatBN7.2 Ensembl7132,463,218 - 132,485,508 (-)Ensembl
Rnor_6.0 Ensembl7142,994,119 - 143,016,040 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103225   ⟹   ENSRNOP00000086494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7134,343,724 - 134,363,872 (-)Ensembl
mRatBN7.2 Ensembl7132,463,802 - 132,479,620 (-)Ensembl
RefSeq Acc Id: NM_001008815   ⟹   NP_001008815
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87134,341,956 - 134,363,872 (-)NCBI
mRatBN7.27132,463,216 - 132,485,134 (-)NCBI
Rnor_6.07142,995,715 - 143,015,932 (-)NCBI
Rnor_5.07140,796,567 - 140,816,784 (-)NCBI
RGSC_v3.47140,096,091 - 140,115,890 (-)RGD
Celera7128,929,953 - 128,950,211 (-)RGD
Sequence:
RefSeq Acc Id: XM_063263678   ⟹   XP_063119748
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87134,341,951 - 134,352,674 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001008815 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119748 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein DAA02056 (Get FASTA)   NCBI Sequence Viewer  
  DAA02057 (Get FASTA)   NCBI Sequence Viewer  
  EDL86899 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000038848
GenBank Protein Q6IMF1 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001008815   ⟸   NM_001008815
- UniProtKB: Q6IMF1 (UniProtKB/Swiss-Prot),   A0A8L2QJM1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000038848   ⟸   ENSRNOT00000029697
Ensembl Acc Id: ENSRNOP00000086494   ⟸   ENSRNOT00000103225
RefSeq Acc Id: XP_063119748   ⟸   XM_063263678
- Peptide Label: isoform X1
Protein Domains
IF rod

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6IMF1-F1-model_v2 AlphaFold Q6IMF1 1-452 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695669
Promoter ID:EPDNEW_R6194
Type:single initiation site
Name:Krt80_1
Description:keratin 80
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07143,016,040 - 143,016,100EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359177 AgrOrtholog
BioCyc Gene G2FUF-31990 BioCyc
Ensembl Genes ENSRNOG00000025994 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000029697 ENTREZGENE
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot
  Single helix bin UniProtKB/Swiss-Prot
  Vasodilator-stimulated phosphoprotein UniProtKB/Swiss-Prot
InterPro IF_rod_dom UniProtKB/Swiss-Prot
  Keratin_2_head UniProtKB/Swiss-Prot
  Keratin_II UniProtKB/Swiss-Prot
KEGG Report rno:315318 UniProtKB/Swiss-Prot
NCBI Gene 315318 ENTREZGENE
PANTHER GATA-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
  KERATIN, TYPE II CYTOSKELETAL 80 UniProtKB/Swiss-Prot
Pfam Filament UniProtKB/Swiss-Prot
  Keratin_2_head UniProtKB/Swiss-Prot
PhenoGen Krt80 PhenoGen
PRINTS TYPE2KERATIN UniProtKB/Swiss-Prot
PROSITE IF_ROD_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000025994 RatGTEx
SMART Filament UniProtKB/Swiss-Prot
Superfamily-SCOP Intermediate filament protein, coiled coil region UniProtKB/Swiss-Prot
UniProt A0A8I6A3W7_RAT UniProtKB/TrEMBL
  A0A8L2QJM1 ENTREZGENE, UniProtKB/TrEMBL
  K2C80_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-16 Krt80  keratin 80  Krt80  keratin 80, type II  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-01-28 Krt80  keratin 80, type II  Krt80  keratin 80  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Krt80  keratin 80  Kb20  type II keratin Kb20  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 Kb20  type II keratin Kb20      Symbol and Name status set to provisional 70820 PROVISIONAL