Tifa (TRAF-interacting protein with forkhead-associated domain) - Rat Genome Database

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Gene: Tifa (TRAF-interacting protein with forkhead-associated domain) Rattus norvegicus
Analyze
Symbol: Tifa
Name: TRAF-interacting protein with forkhead-associated domain
RGD ID: 1359151
Description: Predicted to be involved in several processes, including positive regulation of canonical NF-kappaB signal transduction; protein homooligomerization; and tumor necrosis factor-mediated signaling pathway. Predicted to be active in cytoplasm. Orthologous to human TIFA (TRAF interacting protein with forkhead associated domain); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Ab2-389; LOC310877; T2bp; TRAF-interacting protein with FHA domain-containing protein A; Traf2 binding protein; TRAF2-binding protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82218,927,724 - 218,942,111 (+)NCBIGRCr8
mRatBN7.22216,257,926 - 216,267,635 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2216,234,774 - 216,267,841 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2223,922,080 - 223,931,305 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02221,821,777 - 221,831,000 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02216,675,867 - 216,685,087 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02232,104,394 - 232,137,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2232,104,809 - 232,137,422 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02251,423,679 - 251,482,346 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42225,067,695 - 225,076,898 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12225,054,374 - 225,063,575 (+)NCBI
Celera2208,569,719 - 208,578,933 (+)NCBICelera
Cytogenetic Map2q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxyphenyl retinamide  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
Benoxacor  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
clothianidin  (ISO)
cobalt dichloride  (EXP)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP)
diclofenac  (ISO)
dicrotophos  (ISO)
dimethylarsinic acid  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fipronil  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (EXP)
genistein  (EXP)
gentamycin  (EXP)
hypochlorous acid  (ISO)
ketamine  (EXP)
lipopolysaccharide  (ISO)
methylarsonic acid  (ISO)
orphenadrine  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
protein kinase inhibitor  (ISO)
quercetin  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
succimer  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11798190   PMID:22566686   PMID:26068852   PMID:28222186   PMID:28877472   PMID:30111836  


Genomics

Comparative Map Data
Tifa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82218,927,724 - 218,942,111 (+)NCBIGRCr8
mRatBN7.22216,257,926 - 216,267,635 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2216,234,774 - 216,267,841 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2223,922,080 - 223,931,305 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02221,821,777 - 221,831,000 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02216,675,867 - 216,685,087 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02232,104,394 - 232,137,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2232,104,809 - 232,137,422 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02251,423,679 - 251,482,346 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42225,067,695 - 225,076,898 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12225,054,374 - 225,063,575 (+)NCBI
Celera2208,569,719 - 208,578,933 (+)NCBICelera
Cytogenetic Map2q42NCBI
TIFA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384112,274,537 - 112,285,904 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4112,272,968 - 112,285,955 (-)EnsemblGRCh38hg38GRCh38
GRCh374113,195,693 - 113,207,060 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364113,416,231 - 113,426,508 (-)NCBINCBI36Build 36hg18NCBI36
Celera4110,490,861 - 110,501,136 (-)NCBICelera
Cytogenetic Map4q25NCBI
HuRef4108,928,327 - 108,938,602 (-)NCBIHuRef
CHM1_14113,173,595 - 113,183,871 (-)NCBICHM1_1
T2T-CHM13v2.04115,582,899 - 115,594,247 (-)NCBIT2T-CHM13v2.0
Tifa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393127,582,524 - 127,592,043 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3127,583,454 - 127,625,813 (+)EnsemblGRCm39 Ensembl
GRCm383127,788,875 - 127,798,394 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3127,789,805 - 127,832,164 (+)EnsemblGRCm38mm10GRCm38
MGSCv373127,492,831 - 127,501,307 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363127,781,941 - 127,800,104 (+)NCBIMGSCv36mm8
MGSCv363128,273,227 - 128,291,450 (+)NCBIMGSCv36mm8
Celera3134,292,137 - 134,300,604 (+)NCBICelera
Cytogenetic Map3G2NCBI
cM Map356.54NCBI
Tifa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545714,444,814 - 14,450,767 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545714,444,811 - 14,460,168 (+)NCBIChiLan1.0ChiLan1.0
TIFA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23110,350,189 - 110,362,391 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14110,637,766 - 110,655,760 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04104,765,007 - 104,776,217 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14115,328,436 - 115,338,732 (-)NCBIpanpan1.1PanPan1.1panPan2
TIFA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13232,125,870 - 32,135,159 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3232,126,634 - 32,127,191 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha329,896,747 - 9,907,233 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03232,349,595 - 32,360,055 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3232,349,597 - 32,359,545 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13232,332,694 - 32,343,179 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03232,093,596 - 32,104,107 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0327,757,210 - 7,767,777 (+)NCBIUU_Cfam_GSD_1.0
Tifa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053018,750,214 - 8,757,559 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365633,152,049 - 3,158,999 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365633,151,515 - 3,159,071 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TIFA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8110,377,892 - 110,389,604 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18110,377,817 - 110,394,190 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28118,358,074 - 118,366,203 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TIFA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1760,074,764 - 60,085,029 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl760,076,999 - 60,077,556 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603738,834,354 - 38,846,161 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tifa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248386,160,712 - 6,167,408 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tifa
89 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:409
Count of miRNA genes:228
Interacting mature miRNAs:266
Transcripts:ENSRNOT00000014533
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2189599258218414891Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2185876309219753474Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2185876309219753474Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
631203Gluco14Glucose level QTL 140.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)2206665645219003804Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
2299161Iddm33Insulin dependent diabetes mellitus QTL 332.98blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2206312063220876787Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 2 13 8 11
Low 1 41 55 41 6 41 8 11 72 35 31 8
Below cutoff 2 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000014533   ⟹   ENSRNOP00000061870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2216,258,189 - 216,267,841 (+)Ensembl
Rnor_6.0 Ensembl2232,128,235 - 232,137,422 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000083193   ⟹   ENSRNOP00000072333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2216,235,440 - 216,266,816 (+)Ensembl
Rnor_6.0 Ensembl2232,104,809 - 232,135,991 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097096   ⟹   ENSRNOP00000088802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2216,234,774 - 216,266,827 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102851   ⟹   ENSRNOP00000087830
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2216,258,217 - 216,267,841 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112612   ⟹   ENSRNOP00000077082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2216,259,279 - 216,267,841 (+)Ensembl
RefSeq Acc Id: NM_001014044   ⟹   NP_001014066
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,932,886 - 218,942,111 (+)NCBI
mRatBN7.22216,258,407 - 216,267,630 (+)NCBI
Rnor_6.02232,128,235 - 232,137,425 (+)NCBI
Rnor_5.02251,423,679 - 251,482,346 (+)NCBI
RGSC_v3.42225,067,695 - 225,076,898 (+)RGD
Celera2208,569,719 - 208,578,933 (+)RGD
Sequence:
RefSeq Acc Id: XM_039102463   ⟹   XP_038958391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,933,767 - 218,942,111 (+)NCBI
mRatBN7.22216,259,339 - 216,267,635 (+)NCBI
RefSeq Acc Id: XM_039102464   ⟹   XP_038958392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,932,149 - 218,942,111 (+)NCBI
mRatBN7.22216,257,926 - 216,267,635 (+)NCBI
RefSeq Acc Id: XM_039102465   ⟹   XP_038958393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,934,271 - 218,942,111 (+)NCBI
mRatBN7.22216,259,772 - 216,267,635 (+)NCBI
RefSeq Acc Id: XR_005500306
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,932,667 - 218,942,111 (+)NCBI
mRatBN7.22216,258,472 - 216,267,635 (+)NCBI
RefSeq Acc Id: XR_010063617
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,927,724 - 218,934,611 (+)NCBI
RefSeq Acc Id: XR_010063618
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82218,927,724 - 218,934,611 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001014066   ⟸   NM_001014044
- UniProtKB: Q5XIB9 (UniProtKB/Swiss-Prot),   A6HVM2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000061870   ⟸   ENSRNOT00000014533
RefSeq Acc Id: ENSRNOP00000072333   ⟸   ENSRNOT00000083193
RefSeq Acc Id: XP_038958392   ⟸   XM_039102464
- Peptide Label: isoform X1
- UniProtKB: Q5XIB9 (UniProtKB/Swiss-Prot),   A6HVM2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958391   ⟸   XM_039102463
- Peptide Label: isoform X1
- UniProtKB: Q5XIB9 (UniProtKB/Swiss-Prot),   A6HVM2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958393   ⟸   XM_039102465
- Peptide Label: isoform X1
- UniProtKB: Q5XIB9 (UniProtKB/Swiss-Prot),   A6HVM2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000077082   ⟸   ENSRNOT00000112612
RefSeq Acc Id: ENSRNOP00000088802   ⟸   ENSRNOT00000097096
RefSeq Acc Id: ENSRNOP00000087830   ⟸   ENSRNOT00000102851
Protein Domains
FHA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIB9-F1-model_v2 AlphaFold Q5XIB9 1-185 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691742
Promoter ID:EPDNEW_R2267
Type:initiation region
Name:Tifa_1
Description:TRAF-interacting protein with forkhead-associated domain
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02232,128,256 - 232,128,316EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359151 AgrOrtholog
BioCyc Gene G2FUF-51266 BioCyc
Ensembl Genes ENSRNOG00000010941 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055026603 UniProtKB/Swiss-Prot
  ENSRNOG00060003272 UniProtKB/Swiss-Prot
  ENSRNOG00065015295 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000014533 ENTREZGENE
  ENSRNOT00000014533.7 UniProtKB/Swiss-Prot
  ENSRNOT00000083193.2 UniProtKB/TrEMBL
  ENSRNOT00000097096.1 UniProtKB/TrEMBL
  ENSRNOT00000102851.1 UniProtKB/Swiss-Prot
  ENSRNOT00000112612.1 UniProtKB/Swiss-Prot
  ENSRNOT00055045916 UniProtKB/Swiss-Prot
  ENSRNOT00055045926 UniProtKB/Swiss-Prot
  ENSRNOT00055045928 UniProtKB/Swiss-Prot
  ENSRNOT00060005371 UniProtKB/Swiss-Prot
  ENSRNOT00060005378 UniProtKB/Swiss-Prot
  ENSRNOT00060005380 UniProtKB/Swiss-Prot
  ENSRNOT00065025367 UniProtKB/Swiss-Prot
  ENSRNOT00065025377 UniProtKB/Swiss-Prot
  ENSRNOT00065025379 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7193165 IMAGE-MGC_LOAD
InterPro FHA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIFA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:310877 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94710 IMAGE-MGC_LOAD
NCBI Gene 310877 ENTREZGENE
PANTHER PTHR31266 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRAF-INTERACTING PROTEIN WITH FHA DOMAIN-CONTAINING PROTEIN A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tifa PhenoGen
PROSITE FHA_DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010941 RatGTEx
  ENSRNOG00055026603 RatGTEx
  ENSRNOG00060003272 RatGTEx
  ENSRNOG00065015295 RatGTEx
Superfamily-SCOP SSF49879 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K2Q4_RAT UniProtKB/TrEMBL
  A0A8I6AA78_RAT UniProtKB/TrEMBL
  A6HVM2 ENTREZGENE, UniProtKB/TrEMBL
  Q5XIB9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-05-02 Tifa  TRAF-interacting protein with forkhead-associated domain  T2bp  Traf2 binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 T2bp  Traf2 binding protein  LOC310877  TRAF2 binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-29 LOC310877  TRAF2 binding protein      Symbol and Name status set to provisional 70820 PROVISIONAL