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Gene: C7h19orf25 (similar to human chromosome 19 open reading frame 25) Rattus norvegicus

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Symbol:

C7h19orf25

Name:

similar to human chromosome 19 open reading frame 25

RGD ID:

1359127

Description:

Orthologous to human C19orf25 (chromosome 19 open reading frame 25); INTERACTS WITH (+)-schisandrin B; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC299612; MGC94198; RGD1359127; similar to RIKEN cDNA 2310011J03; UPF0449 protein C19orf25 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	10,040,929 - 10,043,057 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	10,040,893 - 10,043,042 (+)	Ensembl				GRCr8
mRatBN7.2	7	9,390,255 - 9,392,383 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	7	12,267,068 - 12,269,197 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	14,142,410 - 14,144,539 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	12,009,872 - 12,012,000 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	12,256,387 - 12,258,515 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	12,256,387 - 12,258,513 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	12,426,182 - 12,428,310 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	10,901,594 - 10,903,722 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	7,567,048 - 7,569,176 (+)	NCBI		Celera
RGSC_v3.1	7	10,901,593 - 10,903,720 (+)	NCBI
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

2-hydroxypropanoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (EXP)

cisplatin (ISO)

clofibric acid (EXP)

Dibutyl phosphate (ISO)

endosulfan (EXP)

methyl methanesulfonate (ISO)

mono(2-ethylhexyl) phthalate (EXP)

N-nitrosodiethylamine (EXP)

paracetamol (EXP)

quercetin (ISO)

rac-lactic acid (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
2.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

C7h19orf25
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	10,040,929 - 10,043,057 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	10,040,893 - 10,043,042 (+)	Ensembl				GRCr8
mRatBN7.2	7	9,390,255 - 9,392,383 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	7	12,267,068 - 12,269,197 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	14,142,410 - 14,144,539 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	12,009,872 - 12,012,000 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	12,256,387 - 12,258,515 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	12,256,387 - 12,258,513 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	12,426,182 - 12,428,310 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	10,901,594 - 10,903,722 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	7,567,048 - 7,569,176 (+)	NCBI		Celera
RGSC_v3.1	7	10,901,593 - 10,903,720 (+)	NCBI
Cytogenetic Map	7	q11	NCBI

C19orf25
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	1,473,201 - 1,479,215 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	1,461,143 - 1,479,565 (-)	Ensembl			hg38	GRCh38
GRCh37	19	1,473,200 - 1,479,214 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	1,424,200 - 1,430,228 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	1,424,202 - 1,430,193	NCBI
Celera	19	1,407,199 - 1,413,220 (-)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	1,247,085 - 1,253,111 (-)	NCBI		HuRef
CHM1_1	19	1,473,202 - 1,479,229 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	1,443,239 - 1,449,245 (-)	NCBI		T2T-CHM13v2.0

2310011J03Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	80,154,089 - 80,156,382 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	80,154,088 - 80,156,371 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	80,318,255 - 80,320,548 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	80,318,254 - 80,320,537 (-)	Ensembl			mm10	GRCm38
MGSCv37	10	79,781,000 - 79,783,293 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	79,721,383 - 79,723,644 (-)	NCBI		MGSCv36	mm8
Celera	10	81,333,127 - 81,335,420 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

CUNH19orf25
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	6,461,082 - 6,464,720 (+)	Ensembl
ChiLan1.0	NW_004955495	6,461,082 - 6,464,720 (+)	NCBI	ChiLan1.0	ChiLan1.0

C20H19orf25
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	5,820,498 - 5,825,620 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	5,056,521 - 5,062,370 (-)	NCBI		NHGRI_mPanPan1

C20H19orf25
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	57,376,356 - 57,380,511 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	57,377,059 - 57,379,453 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	57,168,983 - 57,172,211 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	58,108,243 - 58,111,473 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	58,108,356 - 58,111,469 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	57,164,449 - 57,167,676 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	57,643,923 - 57,647,149 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	57,845,932 - 57,849,161 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH19orf25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	217,042,399 - 217,045,693 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936588	789,026 - 792,788 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936588	789,095 - 792,348 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C2H19orf25
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	76,998,982 - 77,003,326 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	76,998,982 - 77,003,332 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	77,891,264 - 77,895,615 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C6H19orf25
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	1,245,150 - 1,250,512 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	1,245,729 - 1,250,461 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666081	7,601,321 - 7,606,980 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH19orf25
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	7,217,890 - 7,219,253 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624828	7,217,567 - 7,220,839 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C1H19orf25
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	154,561,015 - 154,563,183 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C7h19orf25
5 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	512
Count of miRNA genes:	246
Interacting mature miRNAs:	284
Transcripts:	ENSRNOT00000021939
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1669658	46669658	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	1	23748937	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	7216097	52216097	Rat
2290372	Gluco33	Glucose level QTL 33	2.71		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	1	31777942	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1709527	46709527	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	32612984	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	9460877	54460877	Rat
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	29716167	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34650782	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	32612984	Rat

Markers in Region

RH132628

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	9,392,338 - 9,392,657 (+)	MAPPER	mRatBN7.2
mRatBN7.2	7	9,392,338 - 9,392,785 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	12,258,471 - 12,258,917	NCBI	Rnor6.0
Rnor_6.0	7	12,258,471 - 12,258,789	NCBI	Rnor6.0
Rnor_5.0	7	12,428,266 - 12,428,712	UniSTS	Rnor5.0
Rnor_5.0	7	12,428,266 - 12,428,584	UniSTS	Rnor5.0
RGSC_v3.4	7	10,903,678 - 10,904,124	UniSTS	RGSC3.4
RGSC_v3.4	7	10,903,678 - 10,903,996	UniSTS	RGSC3.4
Celera	7	7,569,132 - 7,569,450	UniSTS
Celera	7	7,569,132 - 7,569,578	UniSTS
Cytogenetic Map	7	q11	UniSTS

RH139351

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	9,392,201 - 9,392,281 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	12,258,334 - 12,258,413	NCBI	Rnor6.0
Rnor_5.0	7	12,428,129 - 12,428,208	UniSTS	Rnor5.0
RGSC_v3.4	7	10,903,541 - 10,903,620	UniSTS	RGSC3.4
Celera	7	7,568,995 - 7,569,074	UniSTS
Cytogenetic Map	7	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	92	59	6	356	192	11	139	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC079167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021939 ⟹ ENSRNOP00000021940

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	12,256,387 - 12,258,513 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000128648 ⟹ ENSRNOP00000110080

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	10,040,893 - 10,043,042 (+)	Ensembl

RefSeq Acc Id:

NM_001007657 ⟹ NP_001007658

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	10,040,929 - 10,043,057 (+)	NCBI
mRatBN7.2	7	9,390,255 - 9,392,383 (+)	NCBI
Rnor_6.0	7	12,256,387 - 12,258,515 (+)	NCBI
Rnor_5.0	7	12,426,182 - 12,428,310 (+)	NCBI
RGSC_v3.4	7	10,901,594 - 10,903,722 (+)	RGD
Celera	7	7,567,048 - 7,569,176 (+)	RGD

Sequence:

show sequence

GCGAAGATAGGCAGCAGGGTTTTTCTACGGCATACTGACGCGGAGGTCGAACCAAACTCCGAGG
TCCCAGGAGGAGGGTCAGGGAGCTCGGCGCAGGTCCGTAACGGGTGCGTAGGAGTTCGCGGGGT
GAGAGGGCCAAGCCGAGAGTGCACCCCGTTAGCGCGCGCTTCGCCTACAAGATGAGCTCCAAGG
CCAAGAAACGCGTGGTGCTGCCCACTCGCCCCGCGCCTCCCACGGTAGAGCAGATCCTGGAGGA
CGTGCGAGGGGCACCCGCCCAAGATCCTGTTTTTACTGCCCTGGCCCCAGAAGACCCCCTAGAG
CCACTCCCAAGGGCTGAGGACTCTGAGGTCCAGCAGGAGCAGATCTACCAACAGAGCCGGACCT
ACGTGGCTATGAACGAGAGGCTGCGGCAGGCGGGGGATGCGCTGAGGCAGAAGTTCGATGGCCT
TCGGCAAGCTGGTCAGAGGCTGGAACAGGATATTAGTCAGGTGACATCAGCCACGTCCTAGAGC
CAAGGTTAAACCTGATGTCCTTGGCCCAGGCCTGGGCACCTGACAACCAGAAGCTCTGGGTCAA
CATTTACTGCTCCAACCCTACCCTTGGGGGACCCAGTGGCCCACTCCGCGTGCTTGGGGCTTTG
TCCCCTCTTCCATCCTTAATGGCCTCTCACCGGTGATGGGACTTGGGGACATGGCCACCTCGTT
TTGGGGACACCAGCCTAGATTGCATCTAGGACTTGACTGCAGGTCAGGGCTCAGAGGCAGTCTG
CCCCATCGTTACCAGTCTTCCACCAATGTGCTCTTCCTGCCCCCTGTCACCCTGGACAGTGAAG
ATCTCCGTCCCCAACATCCACAGCAGGTCAGCCACTATTGGCTTGGTGACAGAGTAGTCTGGCT
ACCCCCTTCCTAGGGCTGGGGCTACTCAACAAAGGGGTTTTCATTCTGGGGAGGCCATGGGTCC
CAGAGGAGCCCCCCAAAGGCTGGAGTCCTGTGTGTGGTGGACATTGACCCTTCTGGACTAGGGT
TTGGTTTGTCTTCTTGCAGAAGACCCACCACTCTTGGAGTGGCCGGACTTTAGTTCTGAAGATG
AAAGATGTTTGATGCCTGAACACAGATCTCCCTTAAGCTGGACTAGATCACTGGGGGCCCAAAT
CCATGCCACCCCTTGGCCACTCGGGTGTTGGCACCGCACCGGCCTTCTTGGGTCCCAAGCTGGC
TGGACCTGTTTTGTCAGAAATGGTTTTAGCTTGTGGGCCATGTCATTCCTGACCTTCGACATTC
CTGGTGGCCACAGGGTCTGGCTTGCCCTGACTGGTGCAGCCTGGATTCCTGGTCTCCACTCCCA
CCATGACACCTCCACCACAAGTGACCAGTGGCTGATGGCCAAGTACAGCTCCGGTGACCCTCAA
TCAACCTTGGCTCCAGCATGTGGAGACCTGACACGTTGTCCAGTCAGTGGGGAGCTCGGGAGCC
CCGAATCGCCTTCTCGGGTTGGACAACAGCTGCAGAAGAAGGAAGGTTCTGGAACAACCTCCCC
GCTCTGGAGCCCATGTTAAAGATGAAACTCCAGAGCAGCCAAATGTCTCGCTTTATTAAAGATA
TGAACAAAGAATCAGAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001007658	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79167	(Get FASTA)	NCBI Sequence Viewer
	EDL89298	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000110080
GenBank Protein	Q6AY72	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001007658 ⟸ NM_001007657
- UniProtKB:	Q6AY72 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSSKAKKRVVLPTRPAPPTVEQILEDVRGAPAQDPVFTALAPEDPLEPLPRAEDSEVQQEQIYQ QSRTYVAMNERLRQAGDALRQKFDGLRQAGQRLEQDISQVTSATS hide sequence

Ensembl Acc Id:

ENSRNOP00000021940 ⟸ ENSRNOT00000021939

Ensembl Acc Id:

ENSRNOP00000110080 ⟸ ENSRNOT00000128648

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AY72-F1-model_v2	AlphaFold	Q6AY72	1-109	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695025

Promoter ID:

EPDNEW_R5549

Type:

multiple initiation site

Name:

RGD1359127_1

Description:

similar to RIKEN cDNA 2310011J03

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	12,256,374 - 12,256,434	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359127	AgrOrtholog
BioCyc Gene	G2FUF-34931	BioCyc
Ensembl Genes	ENSRNOG00000016399	Ensembl
	ENSRNOG00000079774	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000128648	ENTREZGENE
IMAGE_CLONE	IMAGE:7129744	IMAGE-MGC_LOAD
InterPro	UPF0449	UniProtKB/Swiss-Prot
KEGG Report	rno:299612	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94198	IMAGE-MGC_LOAD
NCBI Gene	299612	ENTREZGENE
PANTHER	PTHR34766	UniProtKB/Swiss-Prot
	UPF0449 PROTEIN C19ORF25	UniProtKB/Swiss-Prot
Pfam	UPF0449	UniProtKB/Swiss-Prot
PhenoGen	C7h19orf25	PhenoGen
RatGTEx	ENSRNOG00000016399	RatGTEx
	ENSRNOG00000079774	RatGTEx
UniProt	CS025_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-09-19	C7h19orf25	similar to human chromosome 19 open reading frame 25	RGD1359127	similar to RIKEN cDNA 2310011J03	Symbol and Name Changed	1299863	APPROVED
2005-11-17	RGD1359127	similar to RIKEN cDNA 2310011J03			Symbol updated	1299863	APPROVED

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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