C19orf25 (chromosome 19 open reading frame 25)

Gene: C19orf25 (chromosome 19 open reading frame 25) Homo sapiens

Analyze

Symbol:

C19orf25

Name:

chromosome 19 open reading frame 25

RGD ID:

1352315

HGNC Page

HGNC:26711

Description:

ASSOCIATED WITH cerebral creatine deficiency syndrome; cyclic hematopoiesis; Neurodevelopmental Disorders; INTERACTS WITH 2-hydroxypropanoic acid; antirheumatic drug; aristolochic acid A

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

FLJ36666; hypothetical protein LOC148223; UPF0449 protein C19orf25

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	1,473,201 - 1,479,215 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	1,461,143 - 1,479,219 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	1,473,200 - 1,479,214 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	1,424,200 - 1,430,228 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	1,424,202 - 1,430,193	NCBI
Celera	19	1,407,199 - 1,413,220 (-)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	1,247,085 - 1,253,111 (-)	NCBI		HuRef
CHM1_1	19	1,473,202 - 1,479,229 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	1,443,239 - 1,449,245 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cerebral creatine deficiency syndrome (IAGP)

cyclic hematopoiesis (IAGP)

Neurodevelopmental Disorders (IAGP)

progressive myoclonus epilepsy 9 (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (ISO)

2-hydroxypropanoic acid (EXP)

antirheumatic drug (EXP)

aristolochic acid A (EXP)

arsane (EXP)

arsenic atom (EXP)

bisphenol A (EXP,ISO)

butanal (EXP)

cadmium dichloride (ISO)

cisplatin (EXP)

clofibric acid (ISO)

endosulfan (ISO)

methyl methanesulfonate (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (ISO)

paracetamol (ISO)

quercetin (EXP)

rac-lactic acid (EXP)

silicon dioxide (EXP)

sunitinib (EXP)

tetrachloromethane (ISO)

valproic acid (EXP)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (IPI)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8619474	PMID:9110174	PMID:12477932	PMID:14702039	PMID:15342556	PMID:15489334	PMID:15824131	PMID:16189514	PMID:16303743	PMID:17207965	PMID:19913121	PMID:20360068
PMID:20628086	PMID:21516116	PMID:22939629	PMID:25416956	PMID:26186194	PMID:26496610	PMID:26638075	PMID:26760575	PMID:27432908	PMID:27880917	PMID:28514442	PMID:28986522
PMID:29395067	PMID:29568061	PMID:29778836	PMID:30833792	PMID:31056421	PMID:32296183	PMID:32814053	PMID:32877691	PMID:33957083	PMID:33961781	PMID:34079125	PMID:34432599
PMID:35271311	PMID:35384245	PMID:35944360	PMID:37931956

Genomics

Comparative Map Data

C19orf25
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	1,473,201 - 1,479,215 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	1,461,143 - 1,479,219 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	1,473,200 - 1,479,214 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	1,424,200 - 1,430,228 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	1,424,202 - 1,430,193	NCBI
Celera	19	1,407,199 - 1,413,220 (-)	NCBI		Celera
Cytogenetic Map	19	p13.3	NCBI
HuRef	19	1,247,085 - 1,253,111 (-)	NCBI		HuRef
CHM1_1	19	1,473,202 - 1,479,229 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	1,443,239 - 1,449,245 (-)	NCBI		T2T-CHM13v2.0

2310011J03Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	80,154,089 - 80,156,382 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	80,154,088 - 80,156,371 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	80,318,255 - 80,320,548 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	80,318,254 - 80,320,537 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	79,781,000 - 79,783,293 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	79,721,383 - 79,723,644 (-)	NCBI		MGSCv36	mm8
Celera	10	81,333,127 - 81,335,420 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

C7h19orf25
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	10,040,929 - 10,043,057 (+)	NCBI		GRCr8
mRatBN7.2	7	9,390,255 - 9,392,383 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	7	12,267,068 - 12,269,197 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	14,142,410 - 14,144,539 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	12,009,872 - 12,012,000 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	12,256,387 - 12,258,515 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	12,256,387 - 12,258,513 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	12,426,182 - 12,428,310 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	10,901,594 - 10,903,722 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	10,901,593 - 10,903,720 (+)	NCBI
Celera	7	7,567,048 - 7,569,176 (+)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

CUNH19orf25
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	6,461,082 - 6,464,720 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955495	6,461,082 - 6,464,720 (+)	NCBI	ChiLan1.0	ChiLan1.0

C20H19orf25
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	5,820,498 - 5,825,620 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	5,056,521 - 5,062,370 (-)	NCBI		NHGRI_mPanPan1

C20H19orf25
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	57,376,356 - 57,380,511 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	57,377,059 - 57,379,453 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	57,168,983 - 57,172,211 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	58,108,243 - 58,111,473 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	58,108,356 - 58,111,469 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	57,164,449 - 57,167,676 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	57,643,923 - 57,647,149 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	57,845,932 - 57,849,161 (+)	NCBI		UU_Cfam_GSD_1.0

CUNH19orf25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	217,042,399 - 217,045,693 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936588	789,095 - 792,348 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C2H19orf25
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	76,998,982 - 77,003,326 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	76,998,982 - 77,003,332 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	77,891,264 - 77,895,615 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CUNH19orf25
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	1,245,150 - 1,250,512 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	1,245,729 - 1,250,461 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666081	7,601,321 - 7,606,980 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH19orf25
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	7,217,890 - 7,219,253 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624828	7,217,567 - 7,220,839 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in C19orf25
2 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 19p13.3(chr19:259395-2555149)x3	copy number gain	See cases [RCV000051044]	Chr19:259395..2555149 [GRCh38] Chr19:259395..2555147 [GRCh37] Chr19:210395..2506147 [NCBI36] Chr19:19p13.3	pathogenic
GRCh38/hg38 19p13.3-13.2(chr19:265917-8564134)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052876]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052876]\|See cases [RCV000052876]	Chr19:265917..8564134 [GRCh38] Chr19:265917..8629018 [GRCh37] Chr19:216917..8535018 [NCBI36] Chr19:19p13.3-13.2	pathogenic
GRCh38/hg38 19p13.3(chr19:259395-1952650)x3	copy number gain	See cases [RCV000052875]	Chr19:259395..1952650 [GRCh38] Chr19:259395..1952649 [GRCh37] Chr19:210395..1903649 [NCBI36] Chr19:19p13.3	pathogenic
GRCh38/hg38 19p13.3(chr19:233565-4699472)x3	copy number gain	See cases [RCV000052575]	Chr19:233565..4699472 [GRCh38] Chr19:233565..4699484 [GRCh37] Chr19:184565..4650484 [NCBI36] Chr19:19p13.3	pathogenic
GRCh38/hg38 19p13.3(chr19:945098-1972299)x1	copy number loss	See cases [RCV000053938]	Chr19:945098..1972299 [GRCh38] Chr19:945098..1972298 [GRCh37] Chr19:896098..1923298 [NCBI36] Chr19:19p13.3	pathogenic
GRCh38/hg38 19p13.3(chr19:421537-2897921)x3	copy number gain	See cases [RCV000134894]	Chr19:421537..2897921 [GRCh38] Chr19:421537..2897919 [GRCh37] Chr19:372537..2848919 [NCBI36] Chr19:19p13.3	likely pathogenic
GRCh38/hg38 19p13.3(chr19:259395-2068507)x3	copy number gain	See cases [RCV000135433]	Chr19:259395..2068507 [GRCh38] Chr19:259395..2068506 [GRCh37] Chr19:210395..2019506 [NCBI36] Chr19:19p13.3	pathogenic
GRCh38/hg38 19p13.3(chr19:1351163-2555149)x3	copy number gain	See cases [RCV000136880]	Chr19:1351163..2555149 [GRCh38] Chr19:1351162..2555147 [GRCh37] Chr19:1302162..2506147 [NCBI36] Chr19:19p13.3	uncertain significance
GRCh38/hg38 19p13.3(chr19:275925-1892276)x3	copy number gain	See cases [RCV000141358]	Chr19:275925..1892276 [GRCh38] Chr19:275925..1892275 [GRCh37] Chr19:226925..1843275 [NCBI36] Chr19:19p13.3	pathogenic
GRCh38/hg38 19p13.3(chr19:259395-6795611)x3	copy number gain	See cases [RCV000142627]	Chr19:259395..6795611 [GRCh38] Chr19:259395..6795622 [GRCh37] Chr19:210395..6746622 [NCBI36] Chr19:19p13.3	pathogenic
GRCh38/hg38 19p13.3(chr19:1453072-1481984)x1	copy number loss	Breast ductal adenocarcinoma [RCV000207057]	Chr19:1453072..1481984 [GRCh38] Chr19:1453071..1481983 [GRCh37] Chr19:19p13.3	uncertain significance
GRCh37/hg19 19p13.3(chr19:277373-2555164)x3	copy number gain	See cases [RCV000240507]	Chr19:277373..2555164 [GRCh37] Chr19:19p13.3	pathogenic
GRCh37/hg19 19p13.3(chr19:260911-1965786)x3	copy number gain	See cases [RCV000511452]	Chr19:260911..1965786 [GRCh37] Chr19:19p13.3	likely pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)x3	copy number gain	See cases [RCV000511289]	Chr19:260912..58956888 [GRCh37] Chr19:19p13.3-q13.43	pathogenic\|uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)	copy number gain	See cases [RCV000512296]	Chr19:260912..58956888 [GRCh37] Chr19:19p13.3-q13.43	pathogenic
GRCh37/hg19 19p13.3(chr19:259395-3152419)	copy number gain	Global developmental delay [RCV000626520]	Chr19:259395..3152419 [GRCh37] Chr19:19p13.3	likely pathogenic
GRCh37/hg19 19p13.3(chr19:260911-3200875)x3	copy number gain	not provided [RCV000684094]	Chr19:260911..3200875 [GRCh37] Chr19:19p13.3	pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:68029-59110290)x3	copy number gain	not provided [RCV000752439]	Chr19:68029..59110290 [GRCh37] Chr19:19p13.3-q13.43	pathogenic
GRCh37/hg19 19p13.3(chr19:1396462-1488242)x3	copy number gain	not provided [RCV000739964]	Chr19:1396462..1488242 [GRCh37] Chr19:19p13.3	benign
GRCh37/hg19 19p13.3(chr19:1396462-1489817)x3	copy number gain	not provided [RCV000739965]	Chr19:1396462..1489817 [GRCh37] Chr19:19p13.3	benign
GRCh37/hg19 19p13.3(chr19:1396462-1489895)x3	copy number gain	not provided [RCV000739966]	Chr19:1396462..1489895 [GRCh37] Chr19:19p13.3	benign
GRCh37/hg19 19p13.3(chr19:1397488-1488242)x3	copy number gain	not provided [RCV000739967]	Chr19:1397488..1488242 [GRCh37] Chr19:19p13.3	benign
GRCh37/hg19 19p13.3(chr19:1397488-1488257)x3	copy number gain	not provided [RCV000739968]	Chr19:1397488..1488257 [GRCh37] Chr19:19p13.3	benign
GRCh37/hg19 19p13.3(chr19:1397488-1489817)x3	copy number gain	not provided [RCV000739969]	Chr19:1397488..1489817 [GRCh37] Chr19:19p13.3	benign
GRCh37/hg19 19p13.3(chr19:1397488-1490703)x3	copy number gain	not provided [RCV000739970]	Chr19:1397488..1490703 [GRCh37] Chr19:19p13.3	benign
GRCh37/hg19 19p13.3(chr19:1398782-1488242)x3	copy number gain	not provided [RCV000739971]	Chr19:1398782..1488242 [GRCh37] Chr19:19p13.3	benign
GRCh37/hg19 19p13.3-q13.43(chr19:260912-59097160)x3	copy number gain	not provided [RCV000752444]	Chr19:260912..59097160 [GRCh37] Chr19:19p13.3-q13.43	pathogenic
GRCh37/hg19 19p13.3(chr19:1398782-1488257)x3	copy number gain	not provided [RCV000739972]	Chr19:1398782..1488257 [GRCh37] Chr19:19p13.3	benign
GRCh37/hg19 19p13.3(chr19:1401345-1488257)x3	copy number gain	not provided [RCV000739973]	Chr19:1401345..1488257 [GRCh37] Chr19:19p13.3	benign
GRCh37/hg19 19p13.3(chr19:1457002-1488257)x3	copy number gain	not provided [RCV000739974]	Chr19:1457002..1488257 [GRCh37] Chr19:19p13.3	benign
GRCh37/hg19 19p13.3(chr19:1460473-1488257)x3	copy number gain	not provided [RCV000739975]	Chr19:1460473..1488257 [GRCh37] Chr19:19p13.3	benign
GRCh37/hg19 19p13.3(chr19:1460473-1550650)x3	copy number gain	not provided [RCV000739976]	Chr19:1460473..1550650 [GRCh37] Chr19:19p13.3	benign
GRCh37/hg19 19p13.3(chr19:1460795-1488242)x3	copy number gain	not provided [RCV000739977]	Chr19:1460795..1488242 [GRCh37] Chr19:19p13.3	benign
NC_000019.9:g.1406030_3597207dup	duplication	Neurodevelopmental disorder [RCV000787423]	Chr19:1406030..3597207 [GRCh37] Chr19:19p13.3	uncertain significance
GRCh37/hg19 19p13.3(chr19:1342624-1817866)x3	copy number gain	not provided [RCV000846077]	Chr19:1342624..1817866 [GRCh37] Chr19:19p13.3	uncertain significance
GRCh37/hg19 19p13.3(chr19:260911-4788357)x3	copy number gain	not provided [RCV000846988]	Chr19:260911..4788357 [GRCh37] Chr19:19p13.3	pathogenic
NC_000019.9:g.(?_589946)_(4818389_?)dup	duplication	not provided [RCV003105391]	Chr19:589946..4818389 [GRCh37] Chr19:19p13.3	uncertain significance
NC_000019.9:g.(?_589946)_(2151333_?)dup	duplication	Cyclical neutropenia [RCV003107569]	Chr19:589946..2151333 [GRCh37] Chr19:19p13.3	uncertain significance
GRCh37/hg19 19p13.3(chr19:1205244-1479188)x1	copy number loss	not provided [RCV002472605]	Chr19:1205244..1479188 [GRCh37] Chr19:19p13.3	pathogenic
GRCh37/hg19 19p13.3(chr19:1075192-2256387)x3	copy number gain	not provided [RCV001007026]	Chr19:1075192..2256387 [GRCh37] Chr19:19p13.3	likely pathogenic
GRCh37/hg19 19p13.3(chr19:260912-4384674)x3	copy number gain	See cases [RCV001007443]	Chr19:260912..4384674 [GRCh37] Chr19:19p13.3	pathogenic
GRCh37/hg19 19p13.3(chr19:260911-3501271)x3	copy number gain	not provided [RCV001007025]	Chr19:260911..3501271 [GRCh37] Chr19:19p13.3	pathogenic
GRCh37/hg19 19p13.3(chr19:260911-2256387)x3	copy number gain	See cases [RCV002285065]	Chr19:260911..2256387 [GRCh37] Chr19:19p13.3	pathogenic
NC_000019.9:g.(?_1465134)_(1497210_?)dup	duplication	not provided [RCV003107363]	Chr19:1465134..1497210 [GRCh37] Chr19:19p13.3	uncertain significance
NC_000019.9:g.(?_1388504)_(1497210_?)dup	duplication	Cerebral creatine deficiency syndrome [RCV001872879]	Chr19:1388504..1497210 [GRCh37] Chr19:19p13.3	uncertain significance
NC_000019.9:g.(?_589946)_(1650247_?)dup	duplication	not provided [RCV001940167]	Chr19:589946..1650247 [GRCh37] Chr19:19p13.3	uncertain significance
NM_005883.3(APC2):c.3044C>T (p.Pro1015Leu)	single nucleotide variant	not provided [RCV000958752]	Chr19:1466345 [GRCh38] Chr19:1466344 [GRCh37] Chr19:19p13.3	benign\|likely benign
NC_000019.9:g.(?_589946)_(5696788_?)dup	duplication	not provided [RCV003113597]	Chr19:589946..5696788 [GRCh37] Chr19:19p13.3	uncertain significance
NC_000019.9:g.(?_1206913)_(1650247_?)del	deletion	Cerebral creatine deficiency syndrome [RCV003119440]	Chr19:1206913..1650247 [GRCh37] Chr19:19p13.3	pathogenic
NC_000019.9:g.(?_1456055)_(2456931_?)dup	duplication	Progressive myoclonic epilepsy type 9 [RCV003122897]	Chr19:1456055..2456931 [GRCh37] Chr19:19p13.3	uncertain significance
GRCh37/hg19 19p13.3(chr19:1356893-1676446)x1	copy number loss	not provided [RCV002474821]	Chr19:1356893..1676446 [GRCh37] Chr19:19p13.3	uncertain significance
NM_152482.3(C19orf25):c.335C>T (p.Ala112Val)	single nucleotide variant	not specified [RCV004242335]	Chr19:1475054 [GRCh38] Chr19:1475053 [GRCh37] Chr19:19p13.3	uncertain significance
NC_000019.9:g.(?_1206913)_(3771740_?)dup	duplication	not provided [RCV003154903]	Chr19:1206913..3771740 [GRCh37] Chr19:19p13.3	uncertain significance
GRCh37/hg19 19p13.3-13.2(chr19:260912-7246777)x3	copy number gain	not provided [RCV003485190]	Chr19:260912..7246777 [GRCh37] Chr19:19p13.3-13.2	pathogenic
NM_152482.3(C19orf25):c.280G>A (p.Gly94Ser)	single nucleotide variant	not specified [RCV004429473]	Chr19:1475109 [GRCh38] Chr19:1475108 [GRCh37] Chr19:19p13.3	uncertain significance

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	6906
Count of miRNA genes:	1061
Interacting mature miRNAs:	1328
Transcripts:	ENST00000427685, ENST00000436106, ENST00000585675, ENST00000586564, ENST00000588427, ENST00000588849, ENST00000588871, ENST00000589421, ENST00000589529, ENST00000590621, ENST00000591027, ENST00000592486, ENST00000592605, ENST00000592872
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

RH39051

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	19	1,472,937 - 1,473,197	UniSTS	GRCh37
Build 36	19	1,423,937 - 1,424,197	RGD	NCBI36
Celera	19	1,406,936 - 1,407,196	RGD
Cytogenetic Map	19	p13.3	UniSTS
HuRef	19	1,246,822 - 1,247,082	UniSTS

D2S2123

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	19	1,473,201 - 1,473,305	UniSTS	GRCh37
Build 36	19	1,424,201 - 1,424,305	RGD	NCBI36
Celera	19	1,407,200 - 1,407,304	RGD
Cytogenetic Map	19	p13.3	UniSTS
HuRef	19	1,247,086 - 1,247,190	UniSTS

STS-N99984

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	19	1,474,177 - 1,474,368	UniSTS	GRCh37
Build 36	19	1,425,177 - 1,425,368	RGD	NCBI36
Celera	19	1,408,176 - 1,408,367	RGD
Cytogenetic Map	19	p13.3	UniSTS
HuRef	19	1,248,062 - 1,248,253	UniSTS
GeneMap99-GB4 RH Map	19	0.0	UniSTS

WI-14332

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	19	1,473,082 - 1,473,231	UniSTS	GRCh37
Build 36	19	1,424,082 - 1,424,231	RGD	NCBI36
Celera	19	1,407,081 - 1,407,230	RGD
Cytogenetic Map	19	p13.3	UniSTS
HuRef	19	1,246,967 - 1,247,116	UniSTS
GeneMap99-GB4 RH Map	19	6.06	UniSTS
Whitehead-RH Map	19	7.6	UniSTS

RH15927

Human Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	19	p13.3	UniSTS
GeneMap99-GB4 RH Map	19	19.95	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

visual system

adipose tissue

appendage

entire extraembryonic component

pharyngeal arch

High

Medium

1193

1000

1200

166

1127

110

1573

573

2770

285

1175

1269

211

1041

Low

1246

1990

526

458

823

355

2784

1624

964

134

285

344

108

993

1747

Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_152482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005259506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006722653	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054320002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC027307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK056004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK075267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK093985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK297944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL122089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY007120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC018441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC071633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP210473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CQ783391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000427685 ⟹ ENSP00000389254

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	1,474,155 - 1,479,216 (-)	Ensembl

RefSeq Acc Id:

ENST00000436106 ⟹ ENSP00000397394

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	1,473,201 - 1,479,118 (-)	Ensembl

RefSeq Acc Id:

ENST00000585675 ⟹ ENSP00000468688

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	1,473,201 - 1,479,215 (-)	Ensembl

RefSeq Acc Id:

ENST00000586564 ⟹ ENSP00000466372

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	1,474,168 - 1,479,181 (-)	Ensembl

RefSeq Acc Id:

ENST00000588427 ⟹ ENSP00000468000

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	1,461,143 - 1,479,201 (-)	Ensembl

RefSeq Acc Id:

ENST00000588849 ⟹ ENSP00000466283

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	1,474,186 - 1,478,916 (-)	Ensembl

RefSeq Acc Id:

ENST00000588871 ⟹ ENSP00000465469

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	1,473,204 - 1,479,194 (-)	Ensembl

RefSeq Acc Id:

ENST00000589421

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	1,478,435 - 1,479,134 (-)	Ensembl

RefSeq Acc Id:

ENST00000590621 ⟹ ENSP00000468064

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	1,474,479 - 1,478,897 (-)	Ensembl

RefSeq Acc Id:

ENST00000591027 ⟹ ENSP00000478936

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	1,475,904 - 1,479,213 (-)	Ensembl

RefSeq Acc Id:

ENST00000592486

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	1,474,172 - 1,476,485 (-)	Ensembl

RefSeq Acc Id:

ENST00000592605

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	1,478,413 - 1,479,219 (-)	Ensembl

RefSeq Acc Id:

ENST00000592872 ⟹ ENSP00000467861

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	1,474,174 - 1,479,183 (-)	Ensembl

RefSeq Acc Id:

ENST00000651077 ⟹ ENSP00000498309

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	19	1,474,176 - 1,479,215 (-)	Ensembl

RefSeq Acc Id:

NM_152482 ⟹ NP_689695

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	1,473,201 - 1,479,215 (-)	NCBI
GRCh37	19	1,473,200 - 1,479,555 (-)	NCBI
Build 36	19	1,424,200 - 1,430,228 (-)	NCBI Archive
Celera	19	1,407,199 - 1,413,220 (-)	RGD
HuRef	19	1,247,085 - 1,253,111 (-)	RGD
CHM1_1	19	1,473,202 - 1,479,229 (-)	NCBI
T2T-CHM13v2.0	19	1,443,239 - 1,449,245 (-)	NCBI

Sequence:

show sequence

GGAATCGGAAGTGGCTGCGTCGTCGACGCTGGGCTTTCGGGTCCCGCGCCCAGAGATGGGCTCC
AAGGCAAAGAAGCGCGTGCTGCTGCCCACCCGCCCAGCGCCCCCCACGGTGGAGCAGATCCTGG
AGGATGTGCGGGGTGCGCCGGCAGAGGATCCAGTGTTCACCATCCTGGCCCCGGAAGACCCCCC
AGTTCCCTTCAGGATGATGGAGGATGCGGAGGCCCCGGGAGAGCAGCTCTACCAGCAAAGCCGG
GCCTACGTGGCTGCCAACCAGCGGCTGCAGCAGGCGGGCAACGTGCTGAGGCAGAGGTGTGAGC
TCCTGCAGCGAGCCGGCGAGGACCTGGAGCGGGAGGTGGCCCAGATGAAGCAGGCAGCATTACC
GGCAGCCGAGGCTGCCTCCTCAGGCTGACCTCTCGGGGCCTGCAGGCTTGGGCAGCGCACAAGG
TGGCCTGCACCCAGGCTTTCCCTGGGGGTCCGTCGGCCCCAGACTGGCATTCACGGGGTCCCAG
CCCACGTGGGTGTTGACACAGGCGCCCCTCCTGATGCTGGGGCTGCGGTTCATCCGTCGTCTCA
TTCATGCCGAGTTGGTGGGACCCACCCAGCTGGCTCCGTCCTGCGTGACCTGAGGGCCCCACTG
GGGTTCTGGAAGAGGATAGGGACATTATTGCTGTACTGTGATTCTGTCGTCAGCTCACAGTGGC
CGTGCTCTGCAGTGGGGCCCCTGGGAGCAGGTGCCACCTCCTTCCTCTCCCGGGGCAGGCACTC
GCCTGTCCACTTCTGAGTCCAGGTGTTGGGATCGAGGTGTTAACTGTGATTCCATCCAGCGAGT
GCCCACCCAATGTCAGAGCAGCCCGAGGGCCAGCCTGAGCCCCTGACCCCACTTCCTTCTGGGC
CCCGGGCTCCTCCCACAAGCCACGTTGATCTTCACAACGACCCTGGGCCGCTGGGGTCACCCAA
GAGAAGCAGCCCTGAGACCCAGCCAGGCTGGGCCTAGCTCCACGGCACGGGTGTCTCCCAGCCA
CTGCCCTTGCTGGAGGACCGCTGTGAGTCACTGGCCAGGAGCCCAGGGTGTCCTGAGTCTCATA
GCCACCCTGCCAGCTGCAGCAGGTCCTGGGCCTGCTTCCCTGCGGGTTCTGGCCCTGGGGGAGG
GGGCGTTAGTGCGGCGGAGGGTCTTGCCAAAGGCTTTTCATCCTAAATAGCAACTTGAGTGGAA
ACCTGGGCAAGGCGGCCCAGAGGCTGGGCCCTGCACATAAAGCTTTCGTGTGTGTCTGGCCGTC
TGAATGGTGCCTCTGTGAGCGGCTCCGTCCCGGGGCCCCGGAAGCTGGGGAGGGATGGGTACCG
GCGACCCCGGGAACCCTGCTCAGTCCTGCCGGGCACTGCATGCAGGGACCGTCCGCCTGACCCA
GAGACCTGGGGCTGCCTCACCCTCTCTCCAGACCCACAGCCAGCTTTGTTTCTTGAATGTGGAA
GATGTTTCTTATTCCCTGAAGAAAGGGGGCCTGCCACACACAGCCTGGGAGGCGCCTCATCCAG
AAACTGGGACTTGGCTAGCCCGGCCTGGGCCCTAGGGACTTCTCACTGGTCATGCTTCTGAAGC
TGCTCACCTGGCCGAGGGAGGTCCCGGCAGTGTCCCAGGGTGGAAGGTGGGGAGGGGGCCGGCT
CCTGCCATCCCTTCCCACCCTGCACTTCTGTGCTGCTTGCAGTCATAGCTTTCCTTGTCCCCCC
AGCTGGGCCAGGGCTGTGCTCCCTGAAGTGGCTTTGACGTGGGGCCGTCCCAGCTCCCGCAGCC
CCTGTCCACCATTGACTCTCCCCGGTAGTGGCTGCTGTGGCTGCCCCATCCCAGCTGTTGCACC
AGCCACAGCTCCTAGTGGCTCATGGGTGCCTCCTGCCCCACACTGGGGCCTGCCATAATAACTG
GCCCAGGTACCAATGCCCAGGTTGGACCCCCTGTCTGGGGTGCTGTGCACCCCCTGGAGCCTGC
CCTCCCTTGGGACCAGGGGGAGACTCCTGGCCTCAGCCAGTGCCTCCCCGGCCCATCTGGGTGG
GGTGCCCACAAACCCTGTGCCCCCAGTTTCTGCTTTCTGGCTCTGCTTCCAGGGATCTAACCTG
GGGGGTCTCAGCAATTCTGTGGCAGCACATAGACAGCGATGAACCTACCCGCCCACAGCCCATT
TTGAGGAAGAGGTGATGGCGGCAGGCAATGCAAGAGCTCAGTTTATTAAATGTGTGCGAGTCGG
ACA

hide sequence

RefSeq Acc Id:

XM_006722653 ⟹ XP_006722716

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	1,473,201 - 1,479,215 (-)	NCBI

Sequence:

show sequence

TTTCGGGTCCCGCGCCCAGGTGGGAAGAGGCCGGCGACTGGGAGATGGGCTCCAAGGCAAAGAA
GCGCGTGCTGCTGCCCACCCGCCCAGCGCCCCCCACGGTGGAGCAGATCCTGGAGGATGTGCGG
GGTGCGCCGGCAGAGGATCCAGTGTTCACCATCCTGGCCCCGGAAGACCCCCCAGTTCCCTTCA
GGATGATGGAGGATGCGGAGGCCCCGGGAGAGCAGCTCTACCAGCAAAGCCGGGCCTACGTGGC
TGCCAACCAGCGGCTGCAGCAGGCGGGCAACGTGCTGAGGCAGAGGTGTGAGCTCCTGCAGCGA
GCCGGCGAGGACCTGGAGCGGGAGGTGGCCCAGATGAAGCAGGCAGCATTACCGGCAGCCGAGG
CTGCCTCCTCAGGCTGACCTCTCGGGGCCTGCAGGCTTGGGCAGCGCACAAGGTGGCCTGCACC
CAGGCTTTCCCTGGGGGTCCGTCGGCCCCAGACTGGCATTCACGGGGTCCCAGCCCACGTGGGT
GTTGACACAGGCGCCCCTCCTGATGCTGGGGCTGCGGTTCATCCGTCGTCTCATTCATGCCGAG
TTGGTGGGACCCACCCAGCTGGCTCCGTCCTGCGTGACCTGAGGGCCCCACTGGGGTTCTGGAA
GAGGATAGGGACATTATTGCTGTACTGTGATTCTGTCGTCAGCTCACAGTGGCCGTGCTCTGCA
GTGGGGCCCCTGGGAGCAGGTGCCACCTCCTTCCTCTCCCGGGGCAGGCACTCGCCTGTCCACT
TCTGAGTCCAGGTGTTGGGATCGAGGTGTTAACTGTGATTCCATCCAGCGAGTGCCCACCCAAT
GTCAGAGCAGCCCGAGGGCCAGCCTGAGCCCCTGACCCCACTTCCTTCTGGGCCCCGGGCTCCT
CCCACAAGCCACGTTGATCTTCACAACGACCCTGGGCCGCTGGGGTCACCCAAGAGAAGCAGCC
CTGAGACCCAGCCAGGCTGGGCCTAGCTCCACGGCACGGGTGTCTCCCAGCCACTGCCCTTGCT
GGAGGACCGCTGTGAGTCACTGGCCAGGAGCCCAGGGTGTCCTGAGTCTCATAGCCACCCTGCC
AGCTGCAGCAGGTCCTGGGCCTGCTTCCCTGCGGGTTCTGGCCCTGGGGGAGGGGGCGTTAGTG
CGGCGGAGGGTCTTGCCAAAGGCTTTTCATCCTAAATAGCAACTTGAGTGGAAACCTGGGCAAG
GCGGCCCAGAGGCTGGGCCCTGCACATAAAGCTTTCGTGTGTGTCTGGCCGTCTGAATGGTGCC
TCTGTGAGCGGCTCCGTCCCGGGGCCCCGGAAGCTGGGGAGGGATGGGTACCGGCGACCCCGGG
AACCCTGCTCAGTCCTGCCGGGCACTGCATGCAGGGACCGTCCGCCTGACCCAGAGACCTGGGG
CTGCCTCACCCTCTCTCCAGACCCACAGCCAGCTTTGTTTCTTGAATGTGGAAGATGTTTCTTA
TTCCCTGAAGAAAGGGGGCCTGCCACACACAGCCTGGGAGGCGCCTCATCCAGAAACTGGGACT
TGGCTAGCCCGGCCTGGGCCCTAGGGACTTCTCACTGGTCATGCTTCTGAAGCTGCTCACCTGG
CCGAGGGAGGTCCCGGCAGTGTCCCAGGGTGGAAGGTGGGGAGGGGGCCGGCTCCTGCCATCCC
TTCCCACCCTGCACTTCTGTGCTGCTTGCAGTCATAGCTTTCCTTGTCCCCCCAGCTGGGCCAG
GGCTGTGCTCCCTGAAGTGGCTTTGACGTGGGGCCGTCCCAGCTCCCGCAGCCCCTGTCCACCA
TTGACTCTCCCCGGTAGTGGCTGCTGTGGCTGCCCCATCCCAGCTGTTGCACCAGCCACAGCTC
CTAGTGGCTCATGGGTGCCTCCTGCCCCACACTGGGGCCTGCCATAATAACTGGCCCAGGTACC
AATGCCCAGGTTGGACCCCCTGTCTGGGGTGCTGTGCACCCCCTGGAGCCTGCCCTCCCTTGGG
ACCAGGGGGAGACTCCTGGCCTCAGCCAGTGCCTCCCCGGCCCATCTGGGTGGGGTGCCCACAA
ACCCTGTGCCCCCAGTTTCTGCTTTCTGGCTCTGCTTCCAGGGATCTAACCTGGGGGGTCTCAG
CAATTCTGTGGCAGCACATAGACAGCGATGAACCTACCCGCCCACAGCCCATTTTGAGGAAGAG
GTGATGGCGGCAGGCAATGCAAGAGCTCAGTTTATTAAATGTGTGCGAGTCGGACA

hide sequence

RefSeq Acc Id:

XM_054320002 ⟹ XP_054175977

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	19	1,443,239 - 1,449,243 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_689695	(Get FASTA)	NCBI Sequence Viewer
	XP_006722716	(Get FASTA)	NCBI Sequence Viewer
	XP_054175977	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH18441	(Get FASTA)	NCBI Sequence Viewer
	BAC04262	(Get FASTA)	NCBI Sequence Viewer
	BAG52098	(Get FASTA)	NCBI Sequence Viewer
	BAG60260	(Get FASTA)	NCBI Sequence Viewer
	CAB59260	(Get FASTA)	NCBI Sequence Viewer
	CAF86596	(Get FASTA)	NCBI Sequence Viewer
	EAW69495	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000389254.2
	ENSP00000397394.1
	ENSP00000465469.1
	ENSP00000466283.1
	ENSP00000466372
	ENSP00000466372.1
	ENSP00000467861.1
	ENSP00000468000.1
	ENSP00000468064.2
	ENSP00000468688
	ENSP00000468688.2
	ENSP00000478936.1
	ENSP00000498309.1
GenBank Protein	Q9UFG5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_689695 ⟸ NM_152482
- UniProtKB:	Q8N9R7 (UniProtKB/Swiss-Prot), B3KQN6 (UniProtKB/Swiss-Prot), Q8WV94 (UniProtKB/Swiss-Prot), Q9UFG5 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGSKAKKRVLLPTRPAPPTVEQILEDVRGAPAEDPVFTILAPEDPPVPFRMMEDAEAPGEQLYQ QSRAYVAANQRLQQAGNVLRQRCELLQRAGEDLEREVAQMKQAALPAAEAASSG hide sequence

RefSeq Acc Id:	XP_006722716 ⟸ XM_006722653
- Peptide Label:	isoform X1
- UniProtKB:	Q8N9R7 (UniProtKB/Swiss-Prot), B3KQN6 (UniProtKB/Swiss-Prot), Q8WV94 (UniProtKB/Swiss-Prot), Q9UFG5 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGSKAKKRVLLPTRPAPPTVEQILEDVRGAPAEDPVFTILAPEDPPVPFRMMEDAEAPGEQLYQ QSRAYVAANQRLQQAGNVLRQRCELLQRAGEDLEREVAQMKQAALPAAEAASSG hide sequence

RefSeq Acc Id:

ENSP00000389254 ⟸ ENST00000427685

RefSeq Acc Id:

ENSP00000468688 ⟸ ENST00000585675

RefSeq Acc Id:

ENSP00000466372 ⟸ ENST00000586564

RefSeq Acc Id:

ENSP00000498309 ⟸ ENST00000651077

RefSeq Acc Id:

ENSP00000468000 ⟸ ENST00000588427

RefSeq Acc Id:

ENSP00000465469 ⟸ ENST00000588871

RefSeq Acc Id:

ENSP00000466283 ⟸ ENST00000588849

RefSeq Acc Id:

ENSP00000468064 ⟸ ENST00000590621

RefSeq Acc Id:

ENSP00000478936 ⟸ ENST00000591027

RefSeq Acc Id:

ENSP00000467861 ⟸ ENST00000592872

RefSeq Acc Id:

ENSP00000397394 ⟸ ENST00000436106

RefSeq Acc Id:	XP_054175977 ⟸ XM_054320002
- Peptide Label:	isoform X1
- UniProtKB:	Q9UFG5 (UniProtKB/Swiss-Prot), Q8N9R7 (UniProtKB/Swiss-Prot), B3KQN6 (UniProtKB/Swiss-Prot), Q8WV94 (UniProtKB/Swiss-Prot)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9UFG5-F1-model_v2	AlphaFold	Q9UFG5	1-118	view protein structure

Promoters

RGD ID:

6811510

Promoter ID:

HG_ACW:39078

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

K562

Transcripts:

C19ORF25.MAPR07-UNSPLICED

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	19	1,425,766 - 1,426,266 (-)	MPROMDB

RGD ID:

6795210

Promoter ID:

HG_KWN:28397

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4

Transcripts:

ENST00000335104, NM_152482, UC002LSX.1, UC002LSY.2

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	19	1,430,051 - 1,430,551 (-)	MPROMDB

RGD ID:

7237837

Promoter ID:

EPDNEW_H24664

Type:

initiation region

Name:

C19orf25_1

Description:

chromosome 19 open reading frame 25

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H24665

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	1,479,215 - 1,479,275	EPDNEW

RGD ID:

7237839

Promoter ID:

EPDNEW_H24665

Type:

initiation region

Name:

C19orf25_2

Description:

chromosome 19 open reading frame 25

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H24664

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	19	1,479,556 - 1,479,616	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:26711	AgrOrtholog
COSMIC	C19orf25	COSMIC
Ensembl Genes	ENSG00000119559	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENST00000427685.2	UniProtKB/TrEMBL
	ENST00000436106.3	UniProtKB/Swiss-Prot
	ENST00000585675	ENTREZGENE
	ENST00000585675.6	UniProtKB/Swiss-Prot
	ENST00000586564	ENTREZGENE
	ENST00000586564.5	UniProtKB/Swiss-Prot
	ENST00000588427.5	UniProtKB/TrEMBL
	ENST00000588849.1	UniProtKB/TrEMBL
	ENST00000588871.5	UniProtKB/TrEMBL
	ENST00000590621.1	UniProtKB/TrEMBL
	ENST00000591027.2	UniProtKB/TrEMBL
	ENST00000592872.5	UniProtKB/Swiss-Prot
	ENST00000651077.1	UniProtKB/TrEMBL
GTEx	ENSG00000119559	GTEx
HGNC ID	HGNC:26711	ENTREZGENE
Human Proteome Map	C19orf25	Human Proteome Map
InterPro	UPF0449	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	hsa:148223	UniProtKB/Swiss-Prot
NCBI Gene	148223	ENTREZGENE
PANTHER	PTHR34766	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	UPF0449 PROTEIN C19ORF25	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	UPF0449	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB	PA134878893	PharmGKB
UniProt	A0A087WUU5_HUMAN	UniProtKB/TrEMBL
	B3KQN6	ENTREZGENE
	CS025_HUMAN	UniProtKB/Swiss-Prot
	E7EP72_HUMAN	UniProtKB/TrEMBL
	K7EK56_HUMAN	UniProtKB/TrEMBL
	K7ELZ1_HUMAN	UniProtKB/TrEMBL
	K7EQW1_HUMAN	UniProtKB/TrEMBL
	K7ER12_HUMAN	UniProtKB/TrEMBL
	Q8N9R7	ENTREZGENE
	Q8WV94	ENTREZGENE
	Q9UFG5	ENTREZGENE
UniProt Secondary	B3KQN6	UniProtKB/Swiss-Prot
	Q8N9R7	UniProtKB/Swiss-Prot
	Q8WV94	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar