Or4k15 (olfactory receptor family 4 subfamily K member 15) - Rat Genome Database

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Pathways
Gene: Or4k15 (olfactory receptor family 4 subfamily K member 15) Rattus norvegicus
Analyze
Symbol: Or4k15
Name: olfactory receptor family 4 subfamily K member 15
RGD ID: 1334431
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane. Orthologous to human OR4K15 (olfactory receptor family 4 subfamily K member 15); INTERACTS WITH bisphenol A; 2,3,7,8-tetrachlorodibenzodioxine (ortholog); aflatoxin B1 (ortholog).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1627; olfactory receptor gene Olr1627; olfactory receptor Olr1627; Olr1627
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81525,752,883 - 25,753,857 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1525,604,519 - 25,753,795 (+)EnsemblGRCr8
mRatBN7.21523,273,303 - 23,274,277 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1523,270,833 - 23,278,421 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1526,050,576 - 26,051,550 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01527,011,896 - 27,012,870 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01525,259,126 - 25,260,100 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01526,887,767 - 26,888,741 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1526,887,767 - 26,888,741 (+)Ensemblrn6Rnor6.0
Rnor_5.01530,813,946 - 30,814,920 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41526,504,566 - 26,505,540 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1523,624,939 - 23,625,913 (+)NCBICelera
RGSC_v3.11526,520,265 - 26,521,240 (+)NCBI
Cytogenetic Map15p14NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Or4k15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81525,752,883 - 25,753,857 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1525,604,519 - 25,753,795 (+)EnsemblGRCr8
mRatBN7.21523,273,303 - 23,274,277 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1523,270,833 - 23,278,421 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1526,050,576 - 26,051,550 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01527,011,896 - 27,012,870 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01525,259,126 - 25,260,100 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01526,887,767 - 26,888,741 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1526,887,767 - 26,888,741 (+)Ensemblrn6Rnor6.0
Rnor_5.01530,813,946 - 30,814,920 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41526,504,566 - 26,505,540 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1523,624,939 - 23,625,913 (+)NCBICelera
RGSC_v3.11526,520,265 - 26,521,240 (+)NCBI
Cytogenetic Map15p14NCBI
OR4K15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381419,975,591 - 19,976,565 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1419,975,591 - 19,976,565 (+)Ensemblhg38GRCh38
GRCh371420,443,750 - 20,444,724 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361419,513,518 - 19,514,564 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341419,513,517 - 19,514,564NCBI
Celera14309,182 - 310,228 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef14569,630 - 570,676 (+)NCBIHuRef
CHM1_11420,444,940 - 20,445,986 (+)NCBICHM1_1
T2T-CHM13v2.01414,175,053 - 14,176,027 (+)NCBIT2T-CHM13v2.0
Or4k15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391450,364,010 - 50,365,044 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1450,360,643 - 50,366,203 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381450,126,553 - 50,127,587 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1450,123,186 - 50,128,746 (+)Ensemblmm10GRCm38
MGSCv371450,746,228 - 50,747,262 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361449,048,530 - 49,049,504 (+)NCBIMGSCv36mm8
Celera1446,357,888 - 46,358,922 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1425.97NCBI
LOC100982052
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21521,484,593 - 21,485,639 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11420,701,083 - 20,702,129 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v014850,152 - 851,355 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11418,914,914 - 18,916,121 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1418,914,983 - 18,916,029 (+)EnsemblpanPan2panpan1.1
OR4K15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.130131,454 - 132,474 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl30131,500 - 132,474 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3034,420 - 35,440 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.030221,199 - 222,219 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl30221,245 - 222,219 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.130176,495 - 177,515 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.030268,752 - 269,772 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.030316,256 - 317,277 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC100152570
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27133,402,998 - 133,404,035 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OR4K15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12920,451,132 - 20,453,730 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2920,452,359 - 20,453,387 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605926,074,187 - 26,075,333 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Or4k15
34 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:32
Interacting mature miRNAs:34
Transcripts:ENSRNOT00000016674
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat


Expression

RNA-SEQ Expression

ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
2 2 2 1 2 2 1 3 2

Sequence


Ensembl Acc Id: ENSRNOT00000016674   ⟹   ENSRNOP00000016674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1526,887,767 - 26,888,741 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118231   ⟹   ENSRNOP00000095430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1523,270,833 - 23,278,421 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000154759   ⟹   ENSRNOP00000099662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1525,604,519 - 25,753,795 (+)Ensembl
RefSeq Acc Id: NM_001000091   ⟹   NP_001000091
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81525,752,883 - 25,753,857 (+)NCBI
mRatBN7.21523,273,303 - 23,274,277 (+)NCBI
Rnor_6.01526,887,767 - 26,888,741 (+)NCBI
Rnor_5.01530,813,946 - 30,814,920 (+)NCBI
RGSC_v3.41526,504,566 - 26,505,540 (+)RGD
Celera1523,624,939 - 23,625,913 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000091 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL88397 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000099662
  ENSRNOP00000099662.1
RefSeq Acc Id: NP_001000091   ⟸   NM_001000091
- UniProtKB: A0A8I6AQJ4 (UniProtKB/TrEMBL),   A6KE92 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016674   ⟸   ENSRNOT00000016674
Ensembl Acc Id: ENSRNOP00000095430   ⟸   ENSRNOT00000118231
Ensembl Acc Id: ENSRNOP00000099662   ⟸   ENSRNOT00000154759
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSE2-F1-model_v2 AlphaFold D3ZSE2 1-324 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1334431 AgrOrtholog
BioCyc Gene G2FUF-14093 BioCyc
Ensembl Genes ENSRNOG00000012510 Ensembl
  ENSRNOG00000064001 Ensembl
  ENSRNOG00000075034 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000154759 ENTREZGENE
  ENSRNOT00000154759.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_Receptors UniProtKB/TrEMBL
KEGG Report rno:290003 UniProtKB/TrEMBL
NCBI Gene 290003 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or4k15 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012510 RatGTEx
  ENSRNOG00000064001 RatGTEx
  ENSRNOG00000075034 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8I6AQJ4 ENTREZGENE
  A0ABK0L6R8_RAT UniProtKB/TrEMBL
  A6KE92 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or4k15  olfactory receptor family 4 subfamily K member 15  Olr1627  olfactory receptor 1627  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1627  olfactory receptor 1627   Olr1627_predicted  olfactory receptor 1627 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1627_predicted  olfactory receptor 1627 (predicted)      Symbol and Name status set to approved 70820 APPROVED