Olr1052 (olfactory receptor 1052) - Rat Genome Database

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Gene: Olr1052 (olfactory receptor 1052) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Olr1052
Name: olfactory receptor 1052
RGD ID: 1334106
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human OR6C76 (olfactory receptor family 6 subfamily C member 76).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: olfactory receptor gene Olr1052; olfactory receptor Olr1052
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr876,969,126 - 6,970,112 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl76,969,126 - 6,970,112 (+)EnsemblGRCr8
mRatBN7.276,318,314 - 6,319,300 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl76,318,314 - 6,319,300 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx79,203,541 - 9,204,527 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0711,079,199 - 11,080,185 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.078,914,803 - 8,915,789 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd79,694,960 - 9,695,946 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive79,114,780 - 9,115,766 (+)NCBILyon_Normotensive
Lyon_Hypertensive79,933,296 - 9,934,282 (+)NCBILyon_Hypertensive
F344_StmMcwi78,287,228 - 8,288,214 (+)NCBIF344_StmMcwi
RGSC_v3.477,740,220 - 7,741,155 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera74,557,908 - 4,558,844 (+)NCBICelera
RGSC_v3.177,740,219 - 7,741,155 (+)NCBI
Cytogenetic Map7q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat


Expression

RNA-SEQ Expression

mesenchyme
renal system
1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001001363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000113980   ⟹   ENSRNOP00000089315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl76,969,126 - 6,970,112 (+)Ensembl
mRatBN7.2 Ensembl76,318,314 - 6,319,300 (+)Ensembl
RefSeq Acc Id: NM_001001363   ⟹   NP_001001363
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr876,969,126 - 6,970,112 (+)NCBI
mRatBN7.276,318,314 - 6,319,300 (+)NCBI
Dahl_SR_JrHsd79,694,960 - 9,695,946 (+)NCBI
Lyon_Normotensive79,114,780 - 9,115,766 (+)NCBI
Lyon_Hypertensive79,933,296 - 9,934,282 (+)NCBI
F344_StmMcwi78,287,228 - 8,288,214 (+)NCBI
RGSC_v3.477,740,220 - 7,741,155 (+)RGD
Celera74,557,908 - 4,558,844 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001001363 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000089315
  ENSRNOP00000089315.1
RefSeq Acc Id: NP_001001363   ⟸   NM_001001363
- UniProtKB: A0A8I6A700 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000089315   ⟸   ENSRNOT00000113980
Protein Domains
G-protein coupled receptors family 1 profile

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1334106 AgrOrtholog
BioCyc Gene G2FUF-35108 BioCyc
Ensembl Genes ENSRNOG00000067519 Ensembl
  ENSRNOG00000076871 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000113980 ENTREZGENE
  ENSRNOT00000113980.2 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfact_rcpt_6C-like UniProtKB/TrEMBL
NCBI Gene 288838 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 6C76 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Olr1052 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000067519 RatGTEx
  ENSRNOG00000076871 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8I6A700 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Olr1052  olfactory receptor 1052   Olr1052_predicted  olfactory receptor 1052 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1052_predicted  olfactory receptor 1052 (predicted)      Symbol and Name status set to approved 70820 APPROVED