Gene-Chemical Interaction Annotations Click to see Annotation Detail View
Object Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Olr1096 | Rat | 1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene | multiple interactions | ISO | Or2z9 (Mus musculus) | 6480464 | [2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ... | CTD | PMID:25510870 | Olr1096 | Rat | 2,2',4,4',5,5'-hexachlorobiphenyl | multiple interactions | ISO | Or2z9 (Mus musculus) | 6480464 | [2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ... | CTD | PMID:25510870 | Olr1096 | Rat | 2,2',5,5'-tetrachlorobiphenyl | multiple interactions | ISO | Or2z9 (Mus musculus) | 6480464 | [2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ... | CTD | PMID:25510870 | Olr1096 | Rat | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | ISO | Or2z9 (Mus musculus) | 6480464 | Tetrachlorodibenzodioxin affects the expression of OR2Z9 mRNA | CTD | PMID:21570461 | Olr1096 | Rat | 2,4,4'-trichlorobiphenyl | multiple interactions | ISO | Or2z9 (Mus musculus) | 6480464 | [2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ... | CTD | PMID:25510870 | Olr1096 | Rat | acrylamide | decreases expression | EXP | | 6480464 | Acrylamide results in decreased expression of OLR1096 mRNA | CTD | PMID:28959563 | Olr1096 | Rat | Azoxymethane | multiple interactions | ISO | Or2z9 (Mus musculus) | 6480464 | [titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in decreased expression of OR2Z9 more ... | CTD | PMID:29950665 | Olr1096 | Rat | benzo[a]pyrene | affects methylation | ISO | OR2Z1 (Homo sapiens) | 6480464 | Benzo(a)pyrene affects the methylation of OR2Z1 promoter | CTD | PMID:27901495 | Olr1096 | Rat | bisphenol A | decreases expression | EXP | | 6480464 | bisphenol A results in decreased expression of OLR1096 mRNA; bisphenol A results in decreased expression more ... | CTD | PMID:25181051|PMID:41034487 | Olr1096 | Rat | cadmium atom | multiple interactions | ISO | OR2Z1 (Homo sapiens) | 6480464 | [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of OR2Z1 more ... | CTD | PMID:35301059 | Olr1096 | Rat | cadmium dichloride | increases methylation | EXP | | 6480464 | Cadmium Chloride results in increased methylation of OLR1096 promoter | CTD | PMID:22457795 | Olr1096 | Rat | cadmium dichloride | multiple interactions | ISO | OR2Z1 (Homo sapiens) | 6480464 | [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of OR2Z1 more ... | CTD | PMID:35301059 | Olr1096 | Rat | dextran sulfate | multiple interactions | ISO | Or2z9 (Mus musculus) | 6480464 | [titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in decreased expression of OR2Z9 more ... | CTD | PMID:29950665 | Olr1096 | Rat | PCB138 | multiple interactions | ISO | Or2z9 (Mus musculus) | 6480464 | [2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ... | CTD | PMID:25510870 | Olr1096 | Rat | pirinixic acid | decreases expression | ISO | Or2z9 (Mus musculus) | 6480464 | pirinixic acid results in decreased expression of OR2Z9 mRNA | CTD | PMID:20813756 | Olr1096 | Rat | resveratrol | multiple interactions | ISO | OR2Z1 (Homo sapiens) | 6480464 | [Plant Extracts co-treated with Resveratrol] results in decreased expression of OR2Z1 mRNA | CTD | PMID:23557933 | Olr1096 | Rat | titanium dioxide | multiple interactions | ISO | Or2z9 (Mus musculus) | 6480464 | [titanium dioxide co-treated with Azoxymethane co-treated with Dextran Sulfate] results in decreased expression of OR2Z9 more ... | CTD | PMID:29950665 | Olr1096 | Rat | triptonide | increases expression | ISO | Or2z9 (Mus musculus) | 6480464 | triptonide results in increased expression of OR2Z9 mRNA | CTD | PMID:33045310 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
 |
Welcome {{ username}}
Message Center
{{ messageCount }} Messages
Watched Genes
{{$index + 1}}. {{ watchedObject.symbol }} (RGD ID:{{watchedObject.rgdId}})
Watched Ontology Terms
{{gene.symbol}}: {{ gene.description }}
|
| You must be logged in to use this feature |
| {{ loginError }} |
|
|
Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
 |
Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
|
MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Gene Ontology Annotations Click to see Annotation Detail View
Biological Process
Cellular Component
Molecular Function
Phenotype Annotations Click to see Annotation Detail View
Mammalian Phenotype
Gene-Chemical Interaction Annotations
Click to see Annotation Detail View
|
|
Gene Ontology Annotations
Click to see Annotation Detail View
Biological Process
|
|
Phenotype Annotations
Click to see Annotation Detail View
References
References - curated
| # | Reference Title | Reference Citation |
| 1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | Genome sequence of the Brown Norway rat yields insights into mammalian evolution. | Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521. |
| 3. | GOA pipeline | RGD automated data pipeline |
| 4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Genomics
Comparative Map Data
| Olr1096 (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| OR2Z1 (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Or2z9 (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| LOC102012695 (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| LOC100969587 (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| OR2Z1 (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| LOC101964876 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| LOC100737385 (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| LOC116908466 (Rattus rattus - black rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
miRNA Target Status (No longer updated)
Predicted Target Of
| The detailed report is available here: |  | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
||||||||
QTLs in Region (GRCr8)
| The following QTLs overlap with this region. | | Full Report | | CSV | | TAB | | Printer | | Gviewer |
Markers in Region
| D7Got204 |
|
Expression
RNA-SEQ Expression
|
ectoderm
|
endocrine system
|
endoderm
|
exocrine system
|
hemolymphoid system
|
hepatobiliary system
|
mesenchyme
|
mesoderm
|
musculoskeletal system
|
nervous system
|
renal system
|
reproductive system
|
sensory system
|
visual system
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18 | 3 | 3 | 3 | 1 | 3 | 9 | 2 | 1 | 17 | 4 | 14 | 3 | 3 |
Sequence
Nucleotide Sequences
| Ensembl Acc Id: | ENSRNOT00000019271 ⟹ ENSRNOP00000019271 | ||||||||
| Type: | CODING | ||||||||
| Position: |
|
| Ensembl Acc Id: | ENSRNOT00000124007 ⟹ ENSRNOP00000104680 | ||||||||
| Type: | CODING | ||||||||
| Position: |
|
| RefSeq Acc Id: | NM_001000485 ⟹ NP_001000485 | ||||||||||||||||||||||||||||
| RefSeq Status: | REVIEWED | ||||||||||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||||||||||
| Position: |
|
||||||||||||||||||||||||||||
| Sequence: |
Protein Sequences
| Protein RefSeqs | NP_001000485 | (Get FASTA) | NCBI Sequence Viewer |
| Ensembl Protein | ENSRNOP00000104680 | ||
| ENSRNOP00000104680.1 |
| RefSeq Acc Id: | NP_001000485 ⟸ NM_001000485 |
| - UniProtKB: | D4ACL1 (UniProtKB/TrEMBL) |
| - Sequence: |
| Ensembl Acc Id: | ENSRNOP00000019271 ⟸ ENSRNOT00000019271 |
| Ensembl Acc Id: | ENSRNOP00000104680 ⟸ ENSRNOT00000124007 |