Or10d3 (olfactory receptor family 10 subfamily D member 3) - Rat Genome Database

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Gene: Or10d3 (olfactory receptor family 10 subfamily D member 3) Rattus norvegicus
Analyze
Symbol: Or10d3
Name: olfactory receptor family 10 subfamily D member 3
RGD ID: 1333668
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human OR10D3 (olfactory receptor family 10 subfamily D member 3); INTERACTS WITH bisphenol A; genistein (ortholog); hydrogen peroxide (ortholog).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1306; olfactory receptor gene Olr1306; olfactory receptor Olr1306; Olr1306
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8848,734,800 - 48,735,738 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl848,734,800 - 48,735,738 (-)EnsemblGRCr8
mRatBN7.2839,827,671 - 39,839,269 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl839,837,661 - 39,838,599 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx845,320,378 - 45,321,316 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0843,604,449 - 43,605,387 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0841,466,568 - 41,467,506 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0843,282,828 - 43,283,766 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl843,282,828 - 43,283,766 (-)Ensemblrn6Rnor6.0
Rnor_5.0843,269,340 - 43,270,278 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4842,416,439 - 42,417,377 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera839,471,364 - 39,472,302 (-)NCBICelera
RGSC_v3.1842,425,204 - 42,426,143 (-)NCBI
Cytogenetic Map8q22NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25411495  


Genomics

Comparative Map Data
Or10d3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8848,734,800 - 48,735,738 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl848,734,800 - 48,735,738 (-)EnsemblGRCr8
mRatBN7.2839,827,671 - 39,839,269 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl839,837,661 - 39,838,599 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx845,320,378 - 45,321,316 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0843,604,449 - 43,605,387 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0841,466,568 - 41,467,506 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0843,282,828 - 43,283,766 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl843,282,828 - 43,283,766 (-)Ensemblrn6Rnor6.0
Rnor_5.0843,269,340 - 43,270,278 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4842,416,439 - 42,417,377 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera839,471,364 - 39,472,302 (-)NCBICelera
RGSC_v3.1842,425,204 - 42,426,143 (-)NCBI
Cytogenetic Map8q22NCBI
OR10D3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811124,183,345 - 124,188,780 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11124,183,345 - 124,188,780 (+)Ensemblhg38GRCh38
GRCh3711124,054,052 - 124,059,487 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611123,561,087 - 123,562,222 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3411123,561,560 - 123,561,903NCBI
Celera11121,215,113 - 121,216,048 (+)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11119,996,920 - 119,997,855 (+)NCBIHuRef
CHM1_111123,942,116 - 123,943,051 (+)NCBICHM1_1
T2T-CHM13v2.011124,211,893 - 124,217,332 (+)NCBIT2T-CHM13v2.0
Or10d3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39939,461,227 - 39,462,165 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl939,459,254 - 39,465,350 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38939,549,931 - 39,550,869 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl939,547,958 - 39,554,054 (-)Ensemblmm10GRCm38
MGSCv37939,357,516 - 39,358,454 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36939,300,502 - 39,301,440 (-)NCBIMGSCv36mm8
Celera936,787,783 - 36,788,721 (-)NCBICelera
Cytogenetic Map9A5.1NCBI
cM Map920.98NCBI
LOC100996106
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29124,879,649 - 124,885,212 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111125,984,069 - 125,990,172 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011119,013,222 - 119,015,002 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111122,929,561 - 122,930,578 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11122,929,609 - 122,930,547 (+)EnsemblpanPan2panpan1.1
LOC489332
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1510,296,808 - 10,298,079 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl510,297,141 - 10,298,079 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha510,347,092 - 10,348,363 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0510,246,340 - 10,247,611 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl510,246,673 - 10,247,611 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1510,313,631 - 10,314,902 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0510,282,556 - 10,283,827 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0510,327,887 - 10,329,159 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
OR10D3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl951,126,795 - 51,127,733 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1951,126,801 - 51,127,882 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2956,598,544 - 56,599,476 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103248945
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11115,421,480 - 115,428,005 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604310,699,785 - 10,705,321 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Or10d3
29 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:100
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000060093
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83975280384752803Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83910625891341052Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)81699464261994642Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83910625891341052Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)839106363103375781Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)81595227960952279Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)81296416557964165Rat
11556286Cm81Cardiac mass QTL 810.01heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)83910625884106258Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)81296416557964165Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)81038254055382540Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)839106363103375781Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)84447792689477926Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)81699464261994642Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)81038254055382540Rat
61337Bp22Blood pressure QTL 225.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625851589833Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)839106258103375958Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)81296416557964165Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)81038254055382540Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83910625891341052Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)835464071107982864Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)84754141992541419Rat
2302278Gluco36Glucose level QTL 364.2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)83776085958991895Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)81038254055382540Rat
724514Uae15Urinary albumin excretion QTL 152.9urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)83776085961459705Rat
631648Stl5Serum triglyceride level QTL 540.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)83546407171842899Rat
61353Bp35Blood pressure QTL 350.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)83910625884106258Rat
631842Inf1Infertility severity QTL 14.10.001seminal gland mass (VT:0010524)seminal vesicle wet weight (CMO:0001603)83154366176543661Rat
1359033Bp273Blood pressure QTL 273arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625884106258Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84444783789447837Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)835464071107982864Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)81799386262252873Rat
1331744Bp217Blood pressure QTL 2173.398arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83910625867378345Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83910625891341052Rat
724540Uae8Urinary albumin excretion QTL 85urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)839106258103375958Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)835464071107982864Rat
1359021Bp271Blood pressure QTL 2711.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)83412590255607752Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)81799410550763951Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)84447504389475043Rat
70206Alc20Alcohol consumption QTL 202drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)83910625849610361Rat


Expression

RNA-SEQ Expression

appendage
circulatory system
mesenchyme
mesoderm
renal system
reproductive system
2 1 4 1 1 17

Sequence


Ensembl Acc Id: ENSRNOT00000060093   ⟹   ENSRNOP00000056842
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl848,734,800 - 48,735,738 (-)Ensembl
mRatBN7.2 Ensembl839,837,661 - 39,838,599 (-)Ensembl
Rnor_6.0 Ensembl843,282,828 - 43,283,766 (-)Ensembl
RefSeq Acc Id: NM_001000465   ⟹   NP_001000465
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8848,734,800 - 48,735,738 (-)NCBI
mRatBN7.2839,837,661 - 39,838,599 (-)NCBI
Rnor_6.0843,282,828 - 43,283,766 (-)NCBI
Rnor_5.0843,269,340 - 43,270,278 (-)NCBI
RGSC_v3.4842,416,439 - 42,417,377 (-)RGD
Celera839,471,364 - 39,472,302 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000465 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL95196 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000056842
  ENSRNOP00000056842.1
RefSeq Acc Id: NP_001000465   ⟸   NM_001000465
- UniProtKB: D3ZIW3 (UniProtKB/TrEMBL),   A6J3M3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000056842   ⟸   ENSRNOT00000060093
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZIW3-F1-model_v2 AlphaFold D3ZIW3 1-312 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1333668 AgrOrtholog
BioCyc Gene G2FUF-30890 BioCyc
Ensembl Genes ENSRNOG00000039236 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000060093 ENTREZGENE
  ENSRNOT00000060093.3 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report rno:300607 UniProtKB/TrEMBL
NCBI Gene 300607 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or10d3 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000039236 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A6J3M3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZIW3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or10d3  olfactory receptor family 10 subfamily D member 3  Olr1306  olfactory receptor 1306  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1306  olfactory receptor 1306   Olr1306_predicted  olfactory receptor 1306 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1306_predicted  olfactory receptor 1306 (predicted)      Symbol and Name status set to approved 70820 APPROVED