Or10h1d (olfactory receptor family 10 subfamily H member 1D) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Or10h1d (olfactory receptor family 10 subfamily H member 1D) Rattus norvegicus
Analyze
Symbol: Or10h1d (Ensembl: Or10h1)
Name: olfactory receptor family 10 subfamily H member 1D (Ensembl:olfactory receptor family 10 subfamily H member 1)
RGD ID: 1333565
Description: Predicted to enable G protein-coupled receptor activity and olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Orthologous to human OR10H1 (olfactory receptor family 10 subfamily H member 1); INTERACTS WITH atrazine; cadmium dichloride; indole-3-methanol.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1095; olfactory receptor gene Olr1095; olfactory receptor Olr1095; Olr1095; ratchr7-14452375-14451419_ORF
RGD Orthologs
Human
Mouse
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8713,490,046 - 13,491,002 (-)NCBIGRCr8
mRatBN7.2712,839,664 - 12,840,620 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl712,839,050 - 12,849,389 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx715,649,759 - 15,650,715 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0717,527,070 - 17,528,026 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0715,398,589 - 15,399,545 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0715,621,989 - 15,622,945 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl715,621,989 - 15,622,945 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0715,788,049 - 15,789,005 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4714,451,419 - 14,452,375 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1714,451,418 - 14,452,375 (-)NCBI
Celera711,729,190 - 11,730,146 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or10h1dRat4-nonylphenol multiple interactionsISORGD:13533116480464[4-tert-octylphenol co-treated with 4-nonylphenol] results in increased expression of OR10H1 mRNACTDPMID:23626723
Or10h1dRat4-tert-Octylphenol multiple interactionsISORGD:13533116480464[4-tert-octylphenol co-treated with 4-nonylphenol] results in increased expression of OR10H1 mRNACTDPMID:23626723
Or10h1dRataristolochic acid A increases expressionISORGD:13533116480464aristolochic acid I results in increased expression of OR10H1 mRNACTDPMID:33212167
Or10h1dRatatrazine affects methylationEXP 6480464Atrazine affects the methylation of OR10H1 geneCTDPMID:35440735
Or10h1dRatbenzo[a]pyrene increases methylationISORGD:13533116480464Benzo(a)pyrene results in increased methylation of OR10H1 exon; Benzo(a)pyrene results in increased methylation of OR10H1 more ...CTDPMID:27901495
Or10h1dRatcadmium dichloride increases methylationEXP 6480464Cadmium Chloride results in increased methylation of OR10H1D promoterCTDPMID:22457795
Or10h1dRatCGP 52608 multiple interactionsISORGD:13533116480464CGP 52608 promotes the reaction [RORA protein binds to OR10H1 gene]CTDPMID:28238834
Or10h1dRatindole-3-methanol affects expressionEXP 6480464indole-3-carbinol affects the expression of OR10H1D mRNACTDPMID:21396975
Or10h1dRatp-tert-Amylphenol multiple interactionsISORGD:13533116480464[4-tert-octylphenol co-treated with 4-nonylphenol] results in increased expression of OR10H1 mRNACTDPMID:23626723

1 to 9 of 9 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or10h1dRatdetection of chemical stimulus involved in sensory perception of smell involved_inIBAMGI:106182|PANTHER:PTN0028180001600115GO_REF:0000033GO_CentralGO_REF:0000033
Or10h1dRatdetection of chemical stimulus involved in sensory perception of smell  IEARGD:51314831303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or10h1dRatG protein-coupled receptor signaling pathway involved_inIEAInterPro:IPR000276|InterPro:IPR0007251600115GO_REF:0000002InterProGO_REF:0000002
Or10h1dRatG protein-coupled receptor signaling pathway  IEARGD:51314831303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or10h1dRatsensory perception of smell involved_inIEAUniProtKB-KW:KW-05521600115GO_REF:0000043UniProtGO_REF:0000043
Or10h1dRatsignal transduction involved_inIEAUniProtKB-KW:KW-08071600115GO_REF:0000043UniProtGO_REF:0000043

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or10h1dRatmembrane located_inIEAInterPro:IPR000276|InterPro:IPR000725|InterPro:IPR0174521600115GO_REF:0000002InterProGO_REF:0000002
Or10h1dRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Or10h1dRatplasma membrane is_active_inIBAMGI:106648|PANTHER:PTN002818000|UniProtKB:Q8N628|UniProtKB:Q8NGE3|UniProtKB:Q8NGS8|UniProtKB:Q8NGS9|UniProtKB:Q8NGT0|UniProtKB:Q8NHC41600115GO_REF:0000033GO_CentralGO_REF:0000033
Or10h1dRatplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Or10h1dRatplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or10h1dRatG protein-coupled receptor activity enablesIEAInterPro:IPR0002761600115GO_REF:0000002InterProGO_REF:0000002
Or10h1dRatolfactory receptor activity enablesIEAInterPro:IPR0007251600115GO_REF:0000002InterProGO_REF:0000002
Or10h1dRatolfactory receptor activity  IEARGD:51314831303377CREATED_DATE field changed to comply with GOC standards. Original CREATED_DATE: 2005-02-17RGD 
Or10h1dRatolfactory receptor activity enablesIBAMGI:106182|MGI:106648|MGI:3030792|MGI:3030794|MGI:3030795|PANTHER:PTN002818000|UniProtKB:Q8NHC41600115GO_REF:0000033GO_CentralGO_REF:0000033

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Or10h1dRattaste/olfaction phenotype  IEA 1303377 RGD 

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions


Or10h1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8713,490,046 - 13,491,002 (-)NCBIGRCr8
mRatBN7.2712,839,664 - 12,840,620 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl712,839,050 - 12,849,389 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx715,649,759 - 15,650,715 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0717,527,070 - 17,528,026 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0715,398,589 - 15,399,545 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0715,621,989 - 15,622,945 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl715,621,989 - 15,622,945 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0715,788,049 - 15,789,005 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4714,451,419 - 14,452,375 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1714,451,418 - 14,452,375 (-)NCBI
Celera711,729,190 - 11,730,146 (-)NCBICelera
Cytogenetic Map7q11NCBI
OR10H1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381915,804,549 - 15,815,664 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1915,804,549 - 15,815,664 (-)EnsemblGRCh38hg38GRCh38
GRCh371915,915,359 - 15,926,474 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361915,778,817 - 15,779,936 (-)NCBINCBI36Build 36hg18NCBI36
Build 341915,778,890 - 15,779,847NCBI
Celera1915,815,749 - 15,816,868 (-)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1915,488,958 - 15,490,077 (-)NCBIHuRef
CHM1_11915,917,272 - 15,918,391 (-)NCBICHM1_1
T2T-CHM13v2.01915,932,396 - 15,943,489 (-)NCBIT2T-CHM13v2.0
Or10h1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391733,418,036 - 33,418,983 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1733,410,276 - 33,421,480 (+)EnsemblGRCm39 Ensembl
GRCm381733,199,062 - 33,200,009 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1733,191,302 - 33,202,506 (+)EnsemblGRCm38mm10GRCm38
MGSCv371733,336,007 - 33,336,954 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361733,336,007 - 33,336,954 (+)NCBIMGSCv36mm8
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
OR10H2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12046,464,187 - 46,465,260 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2046,464,202 - 46,465,137 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2046,361,158 - 46,362,117 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02046,952,673 - 46,953,632 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12046,187,201 - 46,188,159 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02046,599,300 - 46,600,259 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02046,875,256 - 46,876,215 (+)NCBIUU_Cfam_GSD_1.0
LOC100524975
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1261,695,775 - 61,696,719 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2261,305,421 - 61,306,365 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103234087
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1614,386,026 - 14,387,326 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl614,386,151 - 14,387,104 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660745,106,871 - 5,107,755 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.

.
Variants in Or10h1d
4 total Variants

Predicted Target Of
Summary Value
Count of predictions:87
Count of miRNA genes:75
Interacting mature miRNAs:77
Transcripts:ENSRNOT00000051928
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 16 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat

1 to 10 of 16 rows



ectoderm
endocrine system
mesenchyme
mesoderm
nervous system
reproductive system
2 1 1 1 1 9


RefSeq Transcripts NM_001000416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000051928   ⟹   ENSRNOP00000049679
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl712,574,956 - 12,587,973 (-)Ensembl
Rnor_6.0 Ensembl715,621,989 - 15,622,945 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000071081   ⟹   ENSRNOP00000066743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl712,839,050 - 12,849,389 (-)Ensembl
RefSeq Acc Id: NM_001000416   ⟹   NP_001000416
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8713,490,046 - 13,491,002 (-)NCBI
mRatBN7.2712,839,664 - 12,840,620 (-)NCBI
Rnor_6.0715,621,989 - 15,622,945 (+)NCBI
Rnor_5.0715,788,049 - 15,789,005 (+)NCBI
RGSC_v3.4714,451,419 - 14,452,375 (-)RGD
Celera711,729,190 - 11,730,146 (-)RGD
Sequence:
Protein RefSeqs NP_001000416 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000066743.2
  ENSRNOP00000102746
RefSeq Acc Id: NP_001000416   ⟸   NM_001000416
- UniProtKB: M0RB21 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000049679   ⟸   ENSRNOT00000051928
Ensembl Acc Id: ENSRNOP00000066743   ⟸   ENSRNOT00000071081
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZTF8-F1-model_v2 AlphaFold D3ZTF8 1-318 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 23 of 23 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-34766 BioCyc
Ensembl Genes ENSRNOG00000050274 Ensembl
  ENSRNOG00000050907 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000091234 ENTREZGENE
Ensembl Transcript ENSRNOT00000071081.2 UniProtKB/TrEMBL
  ENSRNOT00000148830 ENTREZGENE
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report rno:299576 UniProtKB/TrEMBL
NCBI Gene 299576 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or10h1d PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000050274 RatGTEx
  ENSRNOG00000050907 RatGTEx
  ENSRNOG00000091234 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt M0RB21 ENTREZGENE, UniProtKB/TrEMBL
1 to 23 of 23 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or10h1d  olfactory receptor family 10 subfamily H member 1D  Olr1095  olfactory receptor 1095  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1095  olfactory receptor 1095   Olr1095_predicted  olfactory receptor 1095 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1095_predicted  olfactory receptor 1095 (predicted)      Symbol and Name status set to approved 70820 APPROVED