Olr1610 (olfactory receptor 1610) - Rat Genome Database

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Gene: Olr1610 (olfactory receptor 1610) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Olr1610 (Ensembl: Or4n4)
Name: olfactory receptor 1610 (Ensembl:olfactory receptor family 4 subfamily N member 4)
RGD ID: 1333453
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor gene Olr1610; olfactory receptor Olr1610
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81525,953,802 - 25,954,728 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1525,953,802 - 25,954,728 (-)EnsemblGRCr8
mRatBN7.21523,480,216 - 23,481,142 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1523,479,417 - 23,482,838 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1526,251,485 - 26,252,411 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01527,212,807 - 27,213,733 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01525,460,027 - 25,460,953 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01527,090,610 - 27,091,692 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1527,090,610 - 27,091,399 (+)Ensemblrn6Rnor6.0
Rnor_5.01531,002,767 - 31,003,693 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41526,005,776 - 26,006,702 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1523,812,125 - 23,813,051 (-)NCBICelera
RGSC_v3.11526,021,475 - 26,022,402 (-)NCBI
Cytogenetic Map15p14NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat


Expression

RNA-SEQ Expression

endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
renal system
respiratory system
1 1 4 6 4 2 1

Sequence


Ensembl Acc Id: ENSRNOT00000016721   ⟹   ENSRNOP00000016721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1525,953,802 - 25,954,728 (-)Ensembl
mRatBN7.2 Ensembl1523,479,417 - 23,482,838 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1527,090,610 - 27,091,399 (+)Ensembl
RefSeq Acc Id: NM_001000094   ⟹   NP_001000094
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81525,953,802 - 25,954,728 (-)NCBI
mRatBN7.21523,480,216 - 23,481,142 (-)NCBI
RGSC_v3.41526,005,776 - 26,006,702 (-)RGD
Celera1523,812,125 - 23,813,051 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000094 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL88401 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016721
  ENSRNOP00000016721.3
RefSeq Acc Id: NP_001000094   ⟸   NM_001000094
- UniProtKB: D4A090 (UniProtKB/TrEMBL),   A6KE96 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016721   ⟸   ENSRNOT00000016721
Protein Domains
G-protein coupled receptors family 1 profile

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-14087 BioCyc
Ensembl Genes ENSRNOG00000047419 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000053129 Ensembl
Ensembl Transcript ENSRNOT00000016721 ENTREZGENE
  ENSRNOT00000016721.5 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_Receptors UniProtKB/TrEMBL
KEGG Report rno:290008 UniProtKB/TrEMBL
NCBI Gene 290008 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Olr1610 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047419 RatGTEx
  ENSRNOG00000053129 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A6KE96 ENTREZGENE, UniProtKB/TrEMBL
  D4A090 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Olr1610  olfactory receptor 1610   Olr1610_predicted  olfactory receptor 1610 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1610_predicted  olfactory receptor 1610 (predicted)      Symbol and Name status set to approved 70820 APPROVED