Or10j3b (olfactory receptor family 10 subfamily J member 3B) - Rat Genome Database

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Gene: Or10j3b (olfactory receptor family 10 subfamily J member 3B) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or10j3b
Name: olfactory receptor family 10 subfamily J member 3B
RGD ID: 1333448
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane. Predicted to be active in membrane. Orthologous to human OR10J3 (olfactory receptor family 10 subfamily J member 3 (gene/pseudogene)); INTERACTS WITH 1,2-dimethylhydrazine; 4-aminopyridine; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1583; olfactory receptor gene Olr1583; olfactory receptor Olr1583; Olr1583
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81388,212,909 - 88,213,850 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1388,212,909 - 88,213,850 (+)EnsemblGRCr8
mRatBN7.21385,680,581 - 85,681,522 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1385,675,947 - 85,683,643 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1388,178,552 - 88,179,493 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01389,578,856 - 89,579,797 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01386,763,533 - 86,764,474 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01391,725,324 - 91,726,265 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1391,725,324 - 91,726,265 (+)Ensemblrn6Rnor6.0
Rnor_5.01396,239,742 - 96,240,683 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41389,424,463 - 89,425,404 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1385,284,244 - 85,285,185 (+)NCBICelera
RGSC_v3.11389,613,346 - 89,614,288 (+)NCBI
Cytogenetic Map13q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IBA,IEA)
plasma membrane  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Or10j3b
5 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:7
Count of miRNA genes:7
Interacting mature miRNAs:7
Transcripts:ENSRNOT00000044784
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)1365613454109350286Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
7387280Uae43Urinary albumin excretion QTL 435.690.4174urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1368983334109350286Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134863963493639634Rat
10755495Bp387Blood pressure QTL 3873.78arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133721624190057603Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1367635937109350286Rat
1576318Schws5Schwannoma susceptibility QTL 50.0351nervous system integrity trait (VT:0010566)post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)1364497900109350286Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1338975045103588154Rat
8655951Rf63Renal function QTL 6312.2blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)1371610804109350286Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1383286150109350286Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)137161080489333251Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)137161080489333251Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137298450699745408Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)137161080489333251Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1367635937109350286Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1364375743109350286Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)134735425894285672Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1367635937109350286Rat


Expression

RNA-SEQ Expression

endocrine system
endoderm
exocrine system
hepatobiliary system
mesenchyme
renal system
reproductive system
1 1 1 1 2 1 1

Sequence


Ensembl Acc Id: ENSRNOT00000044784   ⟹   ENSRNOP00000040999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1391,725,324 - 91,726,265 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104947   ⟹   ENSRNOP00000083304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1385,675,947 - 85,683,643 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115239   ⟹   ENSRNOP00000097336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1385,675,986 - 85,683,643 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000171490   ⟹   ENSRNOP00000106459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1388,212,909 - 88,213,850 (+)Ensembl
RefSeq Acc Id: NM_001000080   ⟹   NP_001000080
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81388,212,909 - 88,213,850 (+)NCBI
mRatBN7.21385,680,581 - 85,681,522 (+)NCBI
Rnor_6.01391,725,324 - 91,726,265 (+)NCBI
Rnor_5.01396,239,742 - 96,240,683 (+)NCBI
RGSC_v3.41389,424,463 - 89,425,404 (+)RGD
Celera1385,284,244 - 85,285,185 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000080 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL94734 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000106459
  ENSRNOP00000106459.1
RefSeq Acc Id: NP_001000080   ⟸   NM_001000080
- UniProtKB: D4A1L4 (UniProtKB/TrEMBL),   A6JG78 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000040999   ⟸   ENSRNOT00000044784
Ensembl Acc Id: ENSRNOP00000083304   ⟸   ENSRNOT00000104947
Ensembl Acc Id: ENSRNOP00000097336   ⟸   ENSRNOT00000115239
Ensembl Acc Id: ENSRNOP00000106459   ⟸   ENSRNOT00000171490
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A1L4-F1-model_v2 AlphaFold D4A1L4 1-313 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1333448 AgrOrtholog
BioCyc Gene G2FUF-17281 BioCyc
Ensembl Genes ENSRNOG00000045582 Ensembl
  ENSRNOG00000067763 Ensembl
  ENSRNOG00000078843 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000171490 ENTREZGENE
  ENSRNOT00000171490.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report rno:289241 UniProtKB/TrEMBL
NCBI Gene 289241 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or10j3b PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000045582 RatGTEx
  ENSRNOG00000067763 RatGTEx
  ENSRNOG00000078843 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A6JG78 ENTREZGENE, UniProtKB/TrEMBL
  D4A1L4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or10j3b  olfactory receptor family 10 subfamily J member 3B  Olr1583  olfactory receptor 1583  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1583  olfactory receptor 1583   Olr1583_predicted  olfactory receptor 1583 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1583_predicted  olfactory receptor 1583 (predicted)      Symbol and Name status set to approved 70820 APPROVED