Or2j3 (olfactory receptor family 2 subfamily J member 3) - Rat Genome Database

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Gene: Or2j3 (olfactory receptor family 2 subfamily J member 3) Rattus norvegicus
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Symbol: Or2j3
Name: olfactory receptor family 2 subfamily J member 3
RGD ID: 1333177
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including OR2J2 (olfactory receptor family 2 subfamily J member 2); INTERACTS WITH bisphenol A; cadmium dichloride; 2-palmitoylglycerol (ortholog).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1671; olfactory receptor gene Olr1671; olfactory receptor Olr1671; Olr1671
RGD Orthologs
Human
Mouse
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr820258,323 - 259,261 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl20258,323 - 259,261 (-)EnsemblGRCr8
mRatBN7.220253,033 - 253,971 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl20250,990 - 256,328 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx20262,359 - 263,297 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.020265,824 - 266,762 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.020261,518 - 262,456 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.020399,031 - 399,969 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl20398,886 - 399,933 (-)Ensemblrn6Rnor6.0
Rnor_5.020384,747 - 385,685 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.420178,032 - 178,970 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera201,119,679 - 1,120,617 (-)NCBICelera
RGSC_v3.120178,031 - 178,970 (-)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Or2j3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr820258,323 - 259,261 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl20258,323 - 259,261 (-)EnsemblGRCr8
mRatBN7.220253,033 - 253,971 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl20250,990 - 256,328 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx20262,359 - 263,297 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.020265,824 - 266,762 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.020261,518 - 262,456 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.020399,031 - 399,969 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl20398,886 - 399,933 (-)Ensemblrn6Rnor6.0
Rnor_5.020384,747 - 385,685 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.420178,032 - 178,970 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera201,119,679 - 1,120,617 (-)NCBICelera
RGSC_v3.120178,031 - 178,970 (-)NCBI
Cytogenetic Map20p12NCBI
OR2J2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38629,170,907 - 29,175,811 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl629,170,907 - 29,175,811 (+)Ensemblhg38GRCh38
GRCh37629,138,684 - 29,143,588 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36629,249,290 - 29,250,330 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34629,249,391 - 29,250,330NCBI
Celera630,747,424 - 30,748,464 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef628,948,663 - 28,949,703 (+)NCBIHuRef
CHM1_1629,143,588 - 29,144,628 (+)NCBICHM1_1
T2T-CHM13v2.0629,045,636 - 29,050,536 (+)NCBIT2T-CHM13v2.0
Or2j3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391738,615,412 - 38,616,350 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1738,614,418 - 38,618,461 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381738,304,521 - 38,305,459 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1738,303,527 - 38,307,570 (-)Ensemblmm10GRCm38
MGSCv371738,441,466 - 38,442,404 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361737,912,574 - 37,913,512 (-)NCBIMGSCv36mm8
Celera1741,731,499 - 41,732,437 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1719.16NCBI
LOC100153289
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.2726,073,355 - 26,074,285 (-)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Or2j3
6 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:15
Count of miRNA genes:15
Interacting mature miRNAs:15
Transcripts:ENSRNOT00000000953
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
724519Bp144Blood pressure QTL 1440.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2013629303Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat


Expression

RNA-SEQ Expression

appendage
endoderm
mesenchyme
renal system
reproductive system
respiratory system
1 1 2 1 5 1

Sequence


Ensembl Acc Id: ENSRNOT00000000953   ⟹   ENSRNOP00000000953
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl20258,323 - 259,261 (-)Ensembl
mRatBN7.2 Ensembl20252,651 - 256,328 (-)Ensembl
Rnor_6.0 Ensembl20398,886 - 399,933 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112000   ⟹   ENSRNOP00000091546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl20250,990 - 256,328 (-)Ensembl
RefSeq Acc Id: NM_001000266   ⟹   NP_001000266
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr820258,323 - 259,261 (-)NCBI
mRatBN7.220253,033 - 253,971 (-)NCBI
Rnor_6.020399,031 - 399,969 (-)NCBI
Rnor_5.020384,747 - 385,685 (-)NCBI
RGSC_v3.420178,032 - 178,970 (-)RGD
Celera201,119,679 - 1,120,617 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000266 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL84653 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000000953
  ENSRNOP00000000953.3
RefSeq Acc Id: NP_001000266   ⟸   NM_001000266
- UniProtKB: F1M7K2 (UniProtKB/TrEMBL),   A6KR36 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000000953   ⟸   ENSRNOT00000000953
Ensembl Acc Id: ENSRNOP00000091546   ⟸   ENSRNOT00000112000
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M7K2-F1-model_v2 AlphaFold F1M7K2 1-301 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1333177 AgrOrtholog
BioCyc Gene G2FUF-5091 BioCyc
Ensembl Genes ENSRNOG00000000726 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000953 ENTREZGENE
  ENSRNOT00000000953.5 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report rno:294138 UniProtKB/TrEMBL
NCBI Gene 294138 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or2j3 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000726 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A6KR36 ENTREZGENE, UniProtKB/TrEMBL
  F1M7K2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or2j3  olfactory receptor family 2 subfamily J member 3  Olr1671  olfactory receptor 1671  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1671  olfactory receptor 1671   Olr1671_predicted  olfactory receptor 1671 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1671_predicted  olfactory receptor 1671 (predicted)      Symbol and Name status set to approved 70820 APPROVED