Olr1092 (olfactory receptor 1092) - Rat Genome Database

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Gene: Olr1092 (olfactory receptor 1092) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Olr1092
Name: olfactory receptor 1092
RGD ID: 1332867
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including OR10H1 (olfactory receptor family 10 subfamily H member 1); INTERACTS WITH chlorpyrifos.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: olfactory receptor family 10 subfamily H member 1C, pseudogene 1; olfactory receptor gene Olr1092; olfactory receptor Olr1092; olfactory receptor pseudogene 1094; olfactory receptor pseudogene Olr1094-ps; Olr1094-ps; Or10h1c-ps1; ratchr7-14390639-14391593_ORF
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8713,127,862 - 13,128,818 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl713,127,862 - 13,128,818 (-)EnsemblGRCr8
mRatBN7.2712,477,419 - 12,478,375 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2712,477,449 - 12,478,405 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl712,474,274 - 12,487,484 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx715,268,336 - 15,269,292 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0717,145,672 - 17,146,628 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0715,036,291 - 15,037,247 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0715,705,937 - 15,706,893 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0715,871,726 - 15,872,682 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4714,059,660 - 14,060,616 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera710,561,617 - 10,562,573 (-)NCBICelera
RGSC_v3.1714,059,659 - 14,060,616 (-)NCBI
Cytogenetic Map7q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
chlorpyrifos  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Olr1092
11 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:57
Interacting mature miRNAs:57
Transcripts:ENSRNOT00000042742
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)7123748937Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7129716167Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat


Expression

RNA-SEQ Expression

mesenchyme
renal system
reproductive system
3 3 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001001380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000097999   ⟹   ENSRNOP00000088795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl712,476,232 - 12,483,804 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102527   ⟹   ENSRNOP00000090141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl712,474,274 - 12,487,484 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000121547   ⟹   ENSRNOP00000099937
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl713,127,862 - 13,128,818 (-)Ensembl
RefSeq Acc Id: NM_001001380   ⟹   NP_001001380
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8713,127,862 - 13,128,818 (-)NCBI
mRatBN7.2712,477,449 - 12,478,405 (-)NCBI
Rnor_6.0715,705,937 - 15,706,893 (-)NCBI
Rnor_5.0715,871,756 - 15,872,712 (-)NCBI
RGSC_v3.4714,059,660 - 14,060,616 (-)RGD
Celera710,561,617 - 10,562,573 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001001380 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000099937
  ENSRNOP00000099937.1
RefSeq Acc Id: NP_001001380   ⟸   NM_001001380
- UniProtKB: A0A8I6A788 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000088795   ⟸   ENSRNOT00000097999
Ensembl Acc Id: ENSRNOP00000090141   ⟸   ENSRNOT00000102527
Ensembl Acc Id: ENSRNOP00000099937   ⟸   ENSRNOT00000121547
Protein Domains
G-protein coupled receptors family 1 profile

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1332867 AgrOrtholog
BioCyc Gene G2FUF-34777 BioCyc
Ensembl Genes ENSRNOG00000064395 Ensembl
  ENSRNOG00000073810 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000121547 ENTREZGENE
  ENSRNOT00000121547.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene 299570 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Olr1092 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000064395 RatGTEx
  ENSRNOG00000073810 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8I6A788 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-06 Olr1092  olfactory receptor 1092  Or10h1c-ps1  olfactory receptor family 10 subfamily H member 1C, pseudogene 1  Data merged from RGD:1333193 737654 PROVISIONAL
2022-08-16 Or10h1c-ps1  olfactory receptor family 10 subfamily H member 1C, pseudogene 1  Olr1094-ps  olfactory receptor pseudogene 1094  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1092  olfactory receptor 1092   Olr1092_predicted  olfactory receptor 1092 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1094-ps  olfactory receptor pseudogene 1094      Symbol and Name status set to approved 70820 APPROVED
2005-02-04 Olr1092_predicted  olfactory receptor 1092 (predicted)      Symbol and Name status set to approved 70820 APPROVED