Olr1092 (olfactory receptor 1092) - Rat Genome Database

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Gene: Olr1092 (olfactory receptor 1092) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Olr1092
Name: olfactory receptor 1092
RGD ID: 1332867
Description: Predicted to enable G protein-coupled receptor activity and olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane; INTERACTS WITH chlorpyrifos.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: olfactory receptor family 10 subfamily H member 1C, pseudogene 1; olfactory receptor gene Olr1092; olfactory receptor Olr1092; olfactory receptor pseudogene 1094; olfactory receptor pseudogene Olr1094-ps; Olr1094-ps; Or10h1c-ps1; ratchr7-14390639-14391593_ORF
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8713,127,862 - 13,128,818 (-)NCBIGRCr8
mRatBN7.2712,477,419 - 12,478,375 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2712,477,449 - 12,478,405 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl712,474,274 - 12,487,484 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx715,268,336 - 15,269,292 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0717,145,672 - 17,146,628 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0715,036,291 - 15,037,247 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0715,705,937 - 15,706,893 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0715,871,726 - 15,872,682 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4714,059,660 - 14,060,616 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1714,059,659 - 14,060,616 (-)NCBI
Celera710,561,617 - 10,562,573 (-)NCBICelera
Cytogenetic Map7q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
chlorpyrifos  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Olr1092
7 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:57
Interacting mature miRNAs:57
Transcripts:ENSRNOT00000042742
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001001380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000097999   ⟹   ENSRNOP00000088795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl712,476,232 - 12,483,804 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102527   ⟹   ENSRNOP00000090141
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl712,474,274 - 12,487,484 (-)Ensembl
RefSeq Acc Id: NM_001001380   ⟹   NP_001001380
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8713,127,862 - 13,128,818 (-)NCBI
mRatBN7.2712,477,449 - 12,478,405 (-)NCBI
Rnor_6.0715,705,937 - 15,706,893 (-)NCBI
Rnor_5.0715,871,756 - 15,872,712 (-)NCBI
RGSC_v3.4714,059,660 - 14,060,616 (-)RGD
Celera710,561,617 - 10,562,573 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001001380 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000088795.1
  ENSRNOP00000090141.1
RefSeq Acc Id: NP_001001380   ⟸   NM_001001380
- UniProtKB: A0A8I6A788 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000088795   ⟸   ENSRNOT00000097999
Ensembl Acc Id: ENSRNOP00000090141   ⟸   ENSRNOT00000102527
Protein Domains
G-protein coupled receptors family 1 profile

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-34777 BioCyc
Ensembl Genes ENSRNOG00000064395 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000097999.1 UniProtKB/TrEMBL
  ENSRNOT00000102527.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report rno:299570 UniProtKB/TrEMBL
NCBI Gene 299570 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 10H1-RELATED UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Olr1092 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000064395 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8I6A788 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-06 Olr1092  olfactory receptor 1092  Or10h1c-ps1  olfactory receptor family 10 subfamily H member 1C, pseudogene 1  Data merged from RGD:1333193 737654 PROVISIONAL
2022-08-16 Or10h1c-ps1  olfactory receptor family 10 subfamily H member 1C, pseudogene 1  Olr1094-ps  olfactory receptor pseudogene 1094  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1092  olfactory receptor 1092   Olr1092_predicted  olfactory receptor 1092 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1094-ps  olfactory receptor pseudogene 1094      Symbol and Name status set to approved 70820 APPROVED
2005-02-04 Olr1092_predicted  olfactory receptor 1092 (predicted)      Symbol and Name status set to approved 70820 APPROVED