Cdadc1 (cytidine and dCMP deaminase domain containing 1) - Rat Genome Database

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Gene: Cdadc1 (cytidine and dCMP deaminase domain containing 1) Rattus norvegicus
Analyze
Symbol: Cdadc1
Name: cytidine and dCMP deaminase domain containing 1
RGD ID: 1311845
Description: Predicted to enable several functions, including deaminase activity; importin-alpha family protein binding activity; and protein homodimerization activity. Predicted to be involved in DNA cytosine deamination. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human CDADC1 (cytidine and dCMP deaminase domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cytidine and dCMP deaminase domain-containing protein 1; LOC361052
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81537,902,789 - 37,934,853 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1537,886,258 - 37,931,920 (-)EnsemblGRCr8
mRatBN7.21533,726,590 - 33,755,611 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1533,723,435 - 33,755,576 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1535,588,929 - 35,617,872 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01536,739,609 - 36,768,552 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01535,187,727 - 35,216,726 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01539,865,094 - 39,894,122 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1539,882,210 - 39,893,979 (-)Ensemblrn6Rnor6.0
Rnor_5.01543,686,831 - 43,715,855 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41538,675,339 - 38,687,199 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1533,449,998 - 33,461,858 (-)NCBICelera
RGSC_v3.11538,691,039 - 38,702,899 (-)NCBI
Cytogenetic Map15p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:26945630  


Genomics

Comparative Map Data
Cdadc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81537,902,789 - 37,934,853 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1537,886,258 - 37,931,920 (-)EnsemblGRCr8
mRatBN7.21533,726,590 - 33,755,611 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1533,723,435 - 33,755,576 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1535,588,929 - 35,617,872 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01536,739,609 - 36,768,552 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01535,187,727 - 35,216,726 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01539,865,094 - 39,894,122 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1539,882,210 - 39,893,979 (-)Ensemblrn6Rnor6.0
Rnor_5.01543,686,831 - 43,715,855 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41538,675,339 - 38,687,199 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1533,449,998 - 33,461,858 (-)NCBICelera
RGSC_v3.11538,691,039 - 38,702,899 (-)NCBI
Cytogenetic Map15p12NCBI
CDADC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381349,247,925 - 49,293,485 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1349,247,917 - 49,293,485 (+)Ensemblhg38GRCh38
GRCh371349,822,061 - 49,867,621 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361348,720,099 - 48,765,619 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341348,720,103 - 48,765,619NCBI
Celera1330,877,932 - 30,923,465 (+)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1330,615,855 - 30,661,391 (+)NCBIHuRef
CHM1_11349,789,604 - 49,835,162 (+)NCBICHM1_1
T2T-CHM13v2.01348,469,229 - 48,514,699 (+)NCBIT2T-CHM13v2.0
Cdadc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391459,796,837 - 59,835,433 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1459,796,837 - 59,835,408 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381459,559,386 - 59,597,985 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1459,559,388 - 59,597,959 (-)Ensemblmm10GRCm38
MGSCv371460,178,225 - 60,216,796 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361458,513,497 - 58,552,067 (-)NCBIMGSCv36mm8
Celera1457,361,094 - 57,399,657 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1431.48NCBI
Cdadc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554312,725,742 - 2,767,664 (+)Ensembl
ChiLan1.0NW_0049554312,724,988 - 2,767,539 (+)NCBIChiLan1.0ChiLan1.0
CDADC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21450,686,411 - 50,734,619 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11349,337,650 - 49,385,853 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01330,386,671 - 30,432,112 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11349,138,359 - 49,183,639 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1349,138,498 - 49,186,541 (+)EnsemblpanPan2panpan1.1
CDADC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1222,443,459 - 2,489,147 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl222,436,206 - 2,489,016 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha222,472,664 - 2,518,110 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0222,435,070 - 2,480,586 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl222,408,547 - 2,480,562 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1222,343,275 - 2,388,725 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,392,393 - 2,437,847 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0222,411,044 - 2,456,499 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cdadc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945158,852,547 - 158,911,922 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365652,336,744 - 2,387,195 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365652,336,613 - 2,395,816 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDADC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1118,458,301 - 18,518,146 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11118,467,508 - 18,518,137 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,857,586 - 18,916,039 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDADC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1327,165,870 - 27,212,179 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl327,177,026 - 27,212,171 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605716,675,187 - 16,721,252 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdadc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247485,426,215 - 5,467,082 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247485,420,395 - 5,467,215 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cdadc1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11264,790,209 - 64,819,334 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cdadc1
165 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:257
Count of miRNA genes:180
Interacting mature miRNAs:204
Transcripts:ENSRNOT00000068353
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000068353   ⟹   ENSRNOP00000060798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1537,899,675 - 37,931,886 (-)Ensembl
mRatBN7.2 Ensembl1533,723,476 - 33,755,576 (-)Ensembl
Rnor_6.0 Ensembl1539,882,478 - 39,893,979 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089963   ⟹   ENSRNOP00000075425
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1537,899,634 - 37,931,886 (-)Ensembl
mRatBN7.2 Ensembl1533,723,435 - 33,755,576 (-)Ensembl
Rnor_6.0 Ensembl1539,882,210 - 39,886,613 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103380   ⟹   ENSRNOP00000087904
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1537,902,789 - 37,931,873 (-)Ensembl
mRatBN7.2 Ensembl1533,726,590 - 33,755,576 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104311   ⟹   ENSRNOP00000085311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1537,902,789 - 37,931,903 (-)Ensembl
mRatBN7.2 Ensembl1533,726,590 - 33,755,576 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114927   ⟹   ENSRNOP00000084944
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1537,899,634 - 37,931,903 (-)Ensembl
mRatBN7.2 Ensembl1533,723,435 - 33,755,576 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115313   ⟹   ENSRNOP00000090984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1537,905,644 - 37,931,873 (-)Ensembl
mRatBN7.2 Ensembl1533,730,222 - 33,755,576 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000150867   ⟹   ENSRNOP00000099208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1537,886,353 - 37,931,873 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000168795   ⟹   ENSRNOP00000108560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1537,886,258 - 37,931,920 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000169654   ⟹   ENSRNOP00000106484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1537,886,258 - 37,931,873 (-)Ensembl
RefSeq Acc Id: NM_001012156   ⟹   NP_001012156
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81537,919,904 - 37,931,784 (-)NCBI
mRatBN7.21533,743,707 - 33,755,587 (-)NCBI
Rnor_6.01539,882,209 - 39,894,069 (-)NCBI
Rnor_5.01543,686,831 - 43,715,855 (-)NCBI
RGSC_v3.41538,675,339 - 38,687,199 (-)RGD
Celera1533,449,998 - 33,461,858 (-)RGD
Sequence:
RefSeq Acc Id: NM_001399575   ⟹   NP_001386504
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81537,902,789 - 37,931,784 (-)NCBI
mRatBN7.21533,726,590 - 33,755,587 (-)NCBI
RefSeq Acc Id: NM_001399576   ⟹   NP_001386505
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81537,906,407 - 37,931,784 (-)NCBI
mRatBN7.21533,730,208 - 33,755,587 (-)NCBI
RefSeq Acc Id: XM_006252126   ⟹   XP_006252188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81537,902,789 - 37,931,731 (-)NCBI
mRatBN7.21533,726,590 - 33,755,609 (-)NCBI
Rnor_6.01539,865,094 - 39,894,122 (-)NCBI
Rnor_5.01543,686,831 - 43,715,855 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008770760   ⟹   XP_008768982
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81537,902,789 - 37,931,809 (-)NCBI
mRatBN7.21533,726,590 - 33,755,611 (-)NCBI
Rnor_6.01539,865,094 - 39,894,122 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093502   ⟹   XP_038949430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81537,906,412 - 37,934,853 (-)NCBI
mRatBN7.21533,730,215 - 33,755,611 (-)NCBI
RefSeq Acc Id: XM_063274413   ⟹   XP_063130483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81537,906,412 - 37,931,794 (-)NCBI
RefSeq Acc Id: NP_001012156   ⟸   NM_001012156
- Peptide Label: isoform 1
- UniProtKB: Q5XIE7 (UniProtKB/TrEMBL),   F1MAC1 (UniProtKB/TrEMBL),   A6K685 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252188   ⟸   XM_006252126
- Peptide Label: isoform X4
- UniProtKB: A6K682 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768982   ⟸   XM_008770760
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A8W1 (UniProtKB/TrEMBL),   A0A8I6A0N0 (UniProtKB/TrEMBL),   A6K681 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075425   ⟸   ENSRNOT00000089963
Ensembl Acc Id: ENSRNOP00000060798   ⟸   ENSRNOT00000068353
RefSeq Acc Id: XP_038949430   ⟸   XM_039093502
- Peptide Label: isoform X1
- UniProtKB: A0A0G2KAJ9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085311   ⟸   ENSRNOT00000104311
Ensembl Acc Id: ENSRNOP00000087904   ⟸   ENSRNOT00000103380
Ensembl Acc Id: ENSRNOP00000084944   ⟸   ENSRNOT00000114927
Ensembl Acc Id: ENSRNOP00000090984   ⟸   ENSRNOT00000115313
RefSeq Acc Id: NP_001386504   ⟸   NM_001399575
- Peptide Label: isoform 2
- UniProtKB: A0A8I6A301 (UniProtKB/TrEMBL),   A0A8I6A0N0 (UniProtKB/TrEMBL),   A6K681 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386505   ⟸   NM_001399576
- Peptide Label: isoform 3
- UniProtKB: A0A8I6AFB7 (UniProtKB/TrEMBL),   A6K683 (UniProtKB/TrEMBL),   A0A0G2KAJ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130483   ⟸   XM_063274413
- Peptide Label: isoform X3
- UniProtKB: A0A0G2KAJ9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000106484   ⟸   ENSRNOT00000169654
Ensembl Acc Id: ENSRNOP00000099208   ⟸   ENSRNOT00000150867
Ensembl Acc Id: ENSRNOP00000108560   ⟸   ENSRNOT00000168795
Protein Domains
CMP/dCMP-type deaminase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XIE7-F1-model_v2 AlphaFold Q5XIE7 1-339 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699732
Promoter ID:EPDNEW_R10255
Type:multiple initiation site
Name:Cdadc1_1
Description:cytidine and dCMP deaminase domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01539,894,071 - 39,894,131EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311845 AgrOrtholog
BioCyc Gene G2FUF-13546 BioCyc
BioCyc Pathway PWY-7210 [pyrimidine deoxyribonucleotides biosynthesis from CTP] BioCyc
BioCyc Pathway Image PWY-7210 BioCyc
Ensembl Genes ENSRNOG00000012209 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068353 ENTREZGENE
  ENSRNOT00000068353.5 UniProtKB/TrEMBL
  ENSRNOT00000089963.3 UniProtKB/TrEMBL
  ENSRNOT00000103380 ENTREZGENE
  ENSRNOT00000103380.2 UniProtKB/TrEMBL
  ENSRNOT00000104311 ENTREZGENE
  ENSRNOT00000104311.2 UniProtKB/TrEMBL
  ENSRNOT00000114927.2 UniProtKB/TrEMBL
  ENSRNOT00000115313 ENTREZGENE
  ENSRNOT00000115313.2 UniProtKB/TrEMBL
  ENSRNOT00000150867.1 UniProtKB/TrEMBL
  ENSRNOT00000168795.1 UniProtKB/TrEMBL
  ENSRNOT00000169654.1 UniProtKB/TrEMBL
Gene3D-CATH Cytidine Deaminase, domain 2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7191631 IMAGE-MGC_LOAD
InterPro APOBEC/CMP_deaminase_Zn-bd UniProtKB/TrEMBL
  CMP_dCMP_Zn-bd UniProtKB/TrEMBL
  Cyt_deaminase UniProtKB/TrEMBL
  Cytidine_deaminase-like UniProtKB/TrEMBL
  Deoxycytidylate_deaminase_dom UniProtKB/TrEMBL
KEGG Report rno:361052 UniProtKB/TrEMBL
MGC_CLONE MGC:94645 IMAGE-MGC_LOAD
NCBI Gene 361052 ENTREZGENE
PANTHER Cyt_deaminase UniProtKB/TrEMBL
  CYTIDINE AND DCMP DEAMINASE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam dCMP_cyt_deam_1 UniProtKB/TrEMBL
PhenoGen Cdadc1 PhenoGen
PROSITE CYT_DCMP_DEAMINASES_1 UniProtKB/TrEMBL
  CYT_DCMP_DEAMINASES_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012209 RatGTEx
Superfamily-SCOP Cytidine_deaminase-like UniProtKB/TrEMBL
UniProt A0A0G2KAJ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0N0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A301 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A8W1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AFB7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8J8XM17_RAT UniProtKB/TrEMBL
  A0ABK0L5W4_RAT UniProtKB/TrEMBL
  A0ABK0L8C5_RAT UniProtKB/TrEMBL
  A0ABK0LUG3_RAT UniProtKB/TrEMBL
  A6K681 ENTREZGENE, UniProtKB/TrEMBL
  A6K682 ENTREZGENE, UniProtKB/TrEMBL
  A6K683 ENTREZGENE, UniProtKB/TrEMBL
  A6K685 ENTREZGENE, UniProtKB/TrEMBL
  F1MAC1 ENTREZGENE
  Q5XIE7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1MAC1 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Cdadc1  cytidine and dCMP deaminase domain containing 1  Cdadc1_predicted  cytidine and dCMP deaminase domain containing 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Cdadc1_predicted  cytidine and dCMP deaminase domain containing 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED