Rbfox2 (RNA binding fox-1 homolog 2) - Rat Genome Database

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Gene: Rbfox2 (RNA binding fox-1 homolog 2) Rattus norvegicus
Analyze
Symbol: Rbfox2
Name: RNA binding fox-1 homolog 2
RGD ID: 1311838
Description: Enables single-stranded RNA binding activity. Involved in several processes, including cellular response to peptide hormone stimulus; mRNA alternative polyadenylation; and regulation of gene expression. Located in cytoplasm and nucleus. Biomarker of hypertension. Human ortholog(s) of this gene implicated in congenital heart disease. Orthologous to human RBFOX2 (RNA binding fox-1 homolog 2); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-Tetrachlorodibenzofuran; all-trans-retinoic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: fox-1 homolog B; LOC362950; MGC156775; Rbm9; RNA binding motif protein 9; RNA binding protein fox-1 homolog 2; RNA binding protein, fox-1 homolog (C. elegans) 2; RNA binding protein, fox-1 homolog 2; RNA-binding motif protein 9; RNA-binding protein 9; RNA-binding protein FOX2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,691,230 - 110,934,901 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7110,691,230 - 110,934,987 (-)EnsemblGRCr8
mRatBN7.27108,810,627 - 109,054,420 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,810,628 - 109,054,691 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7110,570,959 - 110,809,646 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07112,794,550 - 113,033,237 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07112,755,992 - 112,994,747 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07118,157,093 - 118,396,733 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7118,156,946 - 118,396,728 (-)Ensemblrn6Rnor6.0
Rnor_5.07118,149,473 - 118,388,515 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47115,143,721 - 115,384,534 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7105,163,071 - 105,401,893 (-)NCBICelera
RGSC_v3.17115,176,300 - 115,250,419 (-)NCBI
Cytogenetic Map7q34NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-pinene  (ISO)
angiotensin II  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
coumestrol  (ISO)
decabromodiphenyl ether  (EXP)
dexamethasone  (ISO)
diuron  (ISO)
Endothelin-1  (EXP)
Enterolactone  (ISO)
folic acid  (ISO)
gallic acid  (ISO)
genistein  (EXP)
imidacloprid  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methoxychlor  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
nickel dichloride  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylephrine  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
thapsigargin  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
torcetrapib  (ISO)
triticonazole  (EXP)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IDA,IEA)
nucleoplasm  (ISO)
nucleus  (IBA,IDA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. RBFOX2 is critical for maintaining alternative polyadenylation patterns and mitochondrial health in rat myoblasts. Cao J, etal., Cell Rep. 2021 Nov 2;37(5):109910. doi: 10.1016/j.celrep.2021.109910.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. LncRNA MIAT Promotes Spinal Cord Injury Recovery in Rats by Regulating RBFOX2-Mediated Alternative Splicing of MCL-1. He X, etal., Mol Neurobiol. 2022 Aug;59(8):4854-4868. doi: 10.1007/s12035-022-02896-2. Epub 2022 May 31.
5. De novo mutations in congenital heart disease with neurodevelopmental and other congenital anomalies. Homsy J, etal., Science. 2015 Dec 4;350(6265):1262-6. doi: 10.1126/science.aac9396.
6. Alternative splicing analysis in human monocytes and macrophages reveals MBNL1 as major regulator. Liu H, etal., Nucleic Acids Res. 2018 Jul 6;46(12):6069-6086. doi: 10.1093/nar/gky401.
7. Loss of RNA expression and allele-specific expression associated with congenital heart disease. McKean DM, etal., Nat Commun. 2016 Sep 27;7:12824. doi: 10.1038/ncomms12824.
8. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
9. Aberrant Expression of a Non-muscle RBFOX2 Isoform Triggers Cardiac Conduction Defects in Myotonic Dystrophy. Misra C, etal., Dev Cell. 2020 Mar 23;52(6):748-763.e6. doi: 10.1016/j.devcel.2020.01.037. Epub 2020 Feb 27.
10. Dysregulation of RBFOX2 Is an Early Event in Cardiac Pathogenesis of Diabetes. Nutter CA, etal., Cell Rep. 2016 Jun 7;15(10):2200-2213. doi: 10.1016/j.celrep.2016.05.002. Epub 2016 May 26.
11. GOA pipeline RGD automated data pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Reactivation of fetal splicing programs in diabetic hearts is mediated by protein kinase C signaling. Verma SK, etal., J Biol Chem. 2013 Dec 6;288(49):35372-86. doi: 10.1074/jbc.M113.507426. Epub 2013 Oct 22.
15. Rbfox2 function in RNA metabolism is impaired in hypoplastic left heart syndrome patient hearts. Verma SK, etal., Sci Rep. 2016 Aug 3;6:30896. doi: 10.1038/srep30896.
16. Genes of the cGMP-PKG-Ca2+ signaling pathway are alternatively spliced in cardiomyopathy: Role of RBFOX2. Wan X, etal., Biochim Biophys Acta Mol Basis Dis. 2020 Mar 1;1866(3):165620. doi: 10.1016/j.bbadis.2019.165620. Epub 2019 Nov 25.
17. Repression of the Central Splicing Regulator RBFox2 Is Functionally Linked to Pressure Overload-Induced Heart Failure. Wei C, etal., Cell Rep. 2015 Mar 10;10(9):1521-1533. doi: 10.1016/j.celrep.2015.02.013. Epub 2015 Mar 5.
18. Cell-type specific regulator RBPMS switches alternative splicing via higher-order oligomerization and heterotypic interactions with other splicing regulators. Yang Y, etal., Nucleic Acids Res. 2023 Oct 13;51(18):9961-9982. doi: 10.1093/nar/gkad652.
19. Aberrant Splicing Induced by Dysregulated Rbfox2 Produces Enhanced Function of CaV1.2 Calcium Channel and Vascular Myogenic Tone in Hypertension. Zhou Y, etal., Hypertension. 2017 Dec;70(6):1183-1192. doi: 10.1161/HYPERTENSIONAHA.117.09301. Epub 2017 Oct 9.
Additional References at PubMed
PMID:11401487   PMID:11875103   PMID:12477932   PMID:17101796   PMID:17715393   PMID:18381283   PMID:19075228   PMID:21177649   PMID:22357600   PMID:22658674   PMID:22681889   PMID:28855650  
PMID:30361391   PMID:34022289   PMID:37415128  


Genomics

Comparative Map Data
Rbfox2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87110,691,230 - 110,934,901 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7110,691,230 - 110,934,987 (-)EnsemblGRCr8
mRatBN7.27108,810,627 - 109,054,420 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7108,810,628 - 109,054,691 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7110,570,959 - 110,809,646 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07112,794,550 - 113,033,237 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07112,755,992 - 112,994,747 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07118,157,093 - 118,396,733 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7118,156,946 - 118,396,728 (-)Ensemblrn6Rnor6.0
Rnor_5.07118,149,473 - 118,388,515 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47115,143,721 - 115,384,534 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7105,163,071 - 105,401,893 (-)NCBICelera
RGSC_v3.17115,176,300 - 115,250,419 (-)NCBI
Cytogenetic Map7q34NCBI
RBFOX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382235,738,736 - 36,028,824 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2235,738,736 - 36,028,824 (-)Ensemblhg38GRCh38
GRCh372236,134,783 - 36,424,872 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362234,464,729 - 34,754,531 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342234,464,148 - 34,560,928NCBI
Celera2219,937,385 - 20,227,179 (-)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2219,102,245 - 19,391,883 (-)NCBIHuRef
CHM1_12236,093,705 - 36,383,622 (-)NCBICHM1_1
T2T-CHM13v2.02236,198,484 - 36,488,569 (-)NCBIT2T-CHM13v2.0
Rbfox2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391576,963,190 - 77,193,058 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1576,963,190 - 77,191,204 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381577,078,990 - 77,308,434 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1577,078,990 - 77,307,004 (-)Ensemblmm10GRCm38
MGSCv371576,909,420 - 77,137,483 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361576,909,594 - 77,134,183 (-)NCBIMGSCv36mm8
Celera1578,567,062 - 78,795,167 (-)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1536.4NCBI
Rbfox2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541322,035,837 - 22,287,763 (-)Ensembl
ChiLan1.0NW_00495541322,034,048 - 22,288,430 (-)NCBIChiLan1.0ChiLan1.0
RBFOX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22345,679,483 - 45,970,525 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12248,371,336 - 48,662,325 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02216,740,707 - 17,031,415 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12234,580,587 - 34,870,251 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2234,586,044 - 34,870,257 (-)EnsemblpanPan2panpan1.1
RBFOX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11028,284,836 - 28,494,618 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1028,192,683 - 28,489,114 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1028,161,477 - 28,434,719 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01029,006,984 - 29,281,227 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1029,006,281 - 29,281,225 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11028,733,191 - 29,007,048 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01029,042,160 - 29,315,956 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01029,220,620 - 29,496,217 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rbfox2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494511,613,596 - 11,816,299 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364924,645,167 - 4,821,291 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364924,624,013 - 4,826,715 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBFOX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl511,633,541 - 11,903,094 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1511,633,523 - 11,905,325 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.259,682,598 - 9,774,702 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBFOX2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11918,507,184 - 18,801,535 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045107,097,992 - 107,393,837 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbfox2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475211,765,679 - 12,022,320 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475211,766,033 - 12,027,804 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rbfox2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11249,420,693 - 249,662,180 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rbfox2
1456 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:26
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000066431
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1331723Bw25Body weight QTL 253.348body mass (VT:0001259)body weight (CMO:0000012)796700404111672180Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
RH125714  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27108,813,975 - 108,814,231 (+)MAPPERmRatBN7.2
Rnor_6.07118,154,817 - 118,155,072NCBIRnor6.0
Rnor_5.07118,147,197 - 118,147,452UniSTSRnor5.0
RGSC_v3.47115,142,081 - 115,142,336UniSTSRGSC3.4
Celera7105,161,431 - 105,161,686UniSTS
Cytogenetic Map7q34UniSTS
R75115  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.07118,149,461 - 118,149,644NCBIRnor5.0
RGSC_v3.47115,143,710 - 115,143,892UniSTSRGSC3.4
Celera7105,163,060 - 105,163,242UniSTS
Cytogenetic Map7q34UniSTS
BF388412  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27108,814,076 - 108,814,269 (+)MAPPERmRatBN7.2
Rnor_6.07118,154,918 - 118,155,110NCBIRnor6.0
Rnor_5.07118,147,298 - 118,147,490UniSTSRnor5.0
RGSC_v3.47115,142,182 - 115,142,374UniSTSRGSC3.4
Celera7105,161,532 - 105,161,724UniSTS
RH 3.4 Map7801.1UniSTS
Cytogenetic Map7q34UniSTS
BF397437  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27109,017,481 - 109,017,637 (+)MAPPERmRatBN7.2
Rnor_6.07118,359,715 - 118,359,870NCBIRnor6.0
Rnor_5.07118,351,494 - 118,351,649UniSTSRnor5.0
RGSC_v3.47115,347,579 - 115,347,734UniSTSRGSC3.4
Celera7105,365,143 - 105,365,298UniSTS
RH 3.4 Map7816.6UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 84 59 6 355 184 11 142 88 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001079895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001414967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001414968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001414969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039079566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063263915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC128766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF177287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000066431   ⟹   ENSRNOP00000063462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7110,691,230 - 110,934,901 (-)Ensembl
mRatBN7.2 Ensembl7108,815,619 - 109,054,403 (-)Ensembl
Rnor_6.0 Ensembl7118,157,096 - 118,396,728 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090370   ⟹   ENSRNOP00000070842
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7110,691,230 - 110,778,488 (-)Ensembl
mRatBN7.2 Ensembl7108,815,416 - 108,898,236 (-)Ensembl
Rnor_6.0 Ensembl7118,156,946 - 118,332,577 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098506   ⟹   ENSRNOP00000090738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7110,691,230 - 110,934,901 (-)Ensembl
mRatBN7.2 Ensembl7108,813,965 - 109,054,691 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102503   ⟹   ENSRNOP00000079386
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7108,813,899 - 108,887,735 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113975   ⟹   ENSRNOP00000081980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7110,691,230 - 110,768,353 (-)Ensembl
mRatBN7.2 Ensembl7108,810,628 - 108,887,735 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114650   ⟹   ENSRNOP00000085442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7110,697,683 - 110,934,987 (-)Ensembl
mRatBN7.2 Ensembl7108,817,080 - 109,054,403 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115642   ⟹   ENSRNOP00000077840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7110,691,230 - 110,768,353 (-)Ensembl
mRatBN7.2 Ensembl7108,813,965 - 108,939,717 (-)Ensembl
RefSeq Acc Id: NM_001079895   ⟹   NP_001073364
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,901 (-)NCBI
mRatBN7.27108,810,627 - 109,054,317 (-)NCBI
Rnor_6.07118,157,093 - 118,396,728 (-)NCBI
Rnor_5.07118,149,473 - 118,388,515 (-)NCBI
RGSC_v3.47115,143,721 - 115,384,534 (-)RGD
Celera7105,163,071 - 105,401,893 (-)RGD
Sequence:
RefSeq Acc Id: NM_001414967   ⟹   NP_001401896
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,901 (-)NCBI
mRatBN7.27108,810,627 - 109,054,317 (-)NCBI
RefSeq Acc Id: NM_001414968   ⟹   NP_001401897
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,778,488 (-)NCBI
mRatBN7.27108,810,627 - 108,897,893 (-)NCBI
RefSeq Acc Id: NM_001414969   ⟹   NP_001401898
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,768,353 (-)NCBI
mRatBN7.27108,810,627 - 108,887,756 (-)NCBI
RefSeq Acc Id: XM_006241831   ⟹   XP_006241893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
mRatBN7.27108,810,627 - 109,054,420 (-)NCBI
Rnor_6.07118,157,131 - 118,396,733 (-)NCBI
Rnor_5.07118,149,473 - 118,388,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241832   ⟹   XP_006241894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
mRatBN7.27108,810,627 - 109,054,420 (-)NCBI
Rnor_6.07118,157,131 - 118,396,733 (-)NCBI
Rnor_5.07118,149,473 - 118,388,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241835   ⟹   XP_006241897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
mRatBN7.27108,810,627 - 109,054,420 (-)NCBI
Rnor_6.07118,157,131 - 118,396,733 (-)NCBI
Rnor_5.07118,149,473 - 118,388,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241837   ⟹   XP_006241899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
mRatBN7.27108,810,627 - 109,054,420 (-)NCBI
Rnor_6.07118,157,131 - 118,396,733 (-)NCBI
Rnor_5.07118,149,473 - 118,388,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241839   ⟹   XP_006241901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
mRatBN7.27108,810,627 - 109,054,420 (-)NCBI
Rnor_6.07118,157,131 - 118,396,733 (-)NCBI
Rnor_5.07118,149,473 - 118,388,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241843   ⟹   XP_006241905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
mRatBN7.27108,810,627 - 109,054,420 (-)NCBI
Rnor_6.07118,157,131 - 118,396,733 (-)NCBI
Rnor_5.07118,149,473 - 118,388,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006241847   ⟹   XP_006241909
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,768,365 (-)NCBI
mRatBN7.27108,810,627 - 108,887,753 (-)NCBI
Rnor_6.07118,157,131 - 118,228,385 (-)NCBI
Rnor_5.07118,149,473 - 118,388,515 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079562   ⟹   XP_038935490
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
mRatBN7.27108,810,627 - 109,054,420 (-)NCBI
RefSeq Acc Id: XM_039079566   ⟹   XP_038935494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,768,488 (-)NCBI
mRatBN7.27108,810,627 - 108,887,750 (-)NCBI
RefSeq Acc Id: XM_063263878   ⟹   XP_063119948
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263879   ⟹   XP_063119949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263880   ⟹   XP_063119950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263881   ⟹   XP_063119951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263882   ⟹   XP_063119952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263883   ⟹   XP_063119953
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263884   ⟹   XP_063119954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263885   ⟹   XP_063119955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263886   ⟹   XP_063119956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263887   ⟹   XP_063119957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263888   ⟹   XP_063119958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263889   ⟹   XP_063119959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263890   ⟹   XP_063119960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263891   ⟹   XP_063119961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263892   ⟹   XP_063119962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263893   ⟹   XP_063119963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263894   ⟹   XP_063119964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263895   ⟹   XP_063119965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263896   ⟹   XP_063119966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,872,641 (-)NCBI
RefSeq Acc Id: XM_063263897   ⟹   XP_063119967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,872,688 (-)NCBI
RefSeq Acc Id: XM_063263898   ⟹   XP_063119968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263899   ⟹   XP_063119969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263900   ⟹   XP_063119970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263901   ⟹   XP_063119971
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,934,516 (-)NCBI
RefSeq Acc Id: XM_063263902   ⟹   XP_063119972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,870,945 (-)NCBI
RefSeq Acc Id: XM_063263903   ⟹   XP_063119973
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,783,406 (-)NCBI
RefSeq Acc Id: XM_063263904   ⟹   XP_063119974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,872,632 (-)NCBI
RefSeq Acc Id: XM_063263905   ⟹   XP_063119975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,768,365 (-)NCBI
RefSeq Acc Id: XM_063263906   ⟹   XP_063119976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,870,945 (-)NCBI
RefSeq Acc Id: XM_063263907   ⟹   XP_063119977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,768,515 (-)NCBI
RefSeq Acc Id: XM_063263908   ⟹   XP_063119978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,872,664 (-)NCBI
RefSeq Acc Id: XM_063263909   ⟹   XP_063119979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,870,945 (-)NCBI
RefSeq Acc Id: XM_063263910   ⟹   XP_063119980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,768,365 (-)NCBI
RefSeq Acc Id: XM_063263911   ⟹   XP_063119981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,783,406 (-)NCBI
RefSeq Acc Id: XM_063263912   ⟹   XP_063119982
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,768,515 (-)NCBI
RefSeq Acc Id: XM_063263913   ⟹   XP_063119983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,872,644 (-)NCBI
RefSeq Acc Id: XM_063263914   ⟹   XP_063119984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,768,365 (-)NCBI
RefSeq Acc Id: XM_063263915   ⟹   XP_063119985
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87110,691,230 - 110,870,763 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001073364 (Get FASTA)   NCBI Sequence Viewer  
  NP_001401896 (Get FASTA)   NCBI Sequence Viewer  
  NP_001401897 (Get FASTA)   NCBI Sequence Viewer  
  NP_001401898 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241893 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241894 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241897 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241899 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241901 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241905 (Get FASTA)   NCBI Sequence Viewer  
  XP_006241909 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935490 (Get FASTA)   NCBI Sequence Viewer  
  XP_038935494 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119948 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119949 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119950 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119951 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119952 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119953 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119954 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119955 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119956 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119957 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119958 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119959 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119960 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119961 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119962 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119963 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119964 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119965 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119966 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119967 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119968 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119969 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119970 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119971 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119972 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119973 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119974 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119975 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119976 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119977 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119978 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119979 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119980 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119981 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119982 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119983 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119984 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119985 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A1A5R1 (Get FASTA)   NCBI Sequence Viewer  
  AAI28767 (Get FASTA)   NCBI Sequence Viewer  
  ASZ84975 (Get FASTA)   NCBI Sequence Viewer  
  EDM15916 (Get FASTA)   NCBI Sequence Viewer  
  EDM15917 (Get FASTA)   NCBI Sequence Viewer  
  EDM15918 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000063462
  ENSRNOP00000063462.1
  ENSRNOP00000070842
  ENSRNOP00000081980
  ENSRNOP00000090738
RefSeq Acc Id: NP_001073364   ⟸   NM_001079895
- Peptide Label: isoform 2
- UniProtKB: A1A5R1 (UniProtKB/Swiss-Prot),   A0A8I5XWK2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241905   ⟸   XM_006241843
- Peptide Label: isoform X29
- UniProtKB: A0A8I6A065 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241899   ⟸   XM_006241837
- Peptide Label: isoform X10
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241894   ⟸   XM_006241832
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006241901   ⟸   XM_006241839
- Peptide Label: isoform X16
- UniProtKB: A0A8I6AED5 (UniProtKB/TrEMBL),   A6HSF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241897   ⟸   XM_006241835
- Peptide Label: isoform X8
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241893   ⟸   XM_006241831
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006241909   ⟸   XM_006241847
- Peptide Label: isoform X37
- UniProtKB: A0A8I5ZML9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070842   ⟸   ENSRNOT00000090370
Ensembl Acc Id: ENSRNOP00000063462   ⟸   ENSRNOT00000066431
RefSeq Acc Id: XP_038935490   ⟸   XM_039079562
- Peptide Label: isoform X11
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038935494   ⟸   XM_039079566
- Peptide Label: isoform X45
- UniProtKB: A6HSF4 (UniProtKB/TrEMBL),   A0A8I5XWK2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000081980   ⟸   ENSRNOT00000113975
Ensembl Acc Id: ENSRNOP00000079386   ⟸   ENSRNOT00000102503
Ensembl Acc Id: ENSRNOP00000085442   ⟸   ENSRNOT00000114650
Ensembl Acc Id: ENSRNOP00000090738   ⟸   ENSRNOT00000098506
Ensembl Acc Id: ENSRNOP00000077840   ⟸   ENSRNOT00000115642
RefSeq Acc Id: NP_001401896   ⟸   NM_001414967
- Peptide Label: isoform 1
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001401897   ⟸   NM_001414968
- Peptide Label: isoform 3
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001401898   ⟸   NM_001414969
- Peptide Label: isoform 4
- UniProtKB: A0A249Y6E1 (UniProtKB/TrEMBL),   A0A8I5ZML9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119964   ⟸   XM_063263894
- Peptide Label: isoform X23
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119956   ⟸   XM_063263886
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063119962   ⟸   XM_063263892
- Peptide Label: isoform X21
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119955   ⟸   XM_063263885
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063119954   ⟸   XM_063263884
- Peptide Label: isoform X12
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119971   ⟸   XM_063263901
- Peptide Label: isoform X31
- UniProtKB: A0A8I6A065 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119965   ⟸   XM_063263895
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063119960   ⟸   XM_063263890
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063119958   ⟸   XM_063263888
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063119953   ⟸   XM_063263883
- Peptide Label: isoform X9
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119949   ⟸   XM_063263879
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063119970   ⟸   XM_063263900
- Peptide Label: isoform X30
- UniProtKB: A0A8I6A065 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119961   ⟸   XM_063263891
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063119950   ⟸   XM_063263880
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063119968   ⟸   XM_063263898
- Peptide Label: isoform X27
- UniProtKB: A0A8I6A065 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119969   ⟸   XM_063263899
- Peptide Label: isoform X28
- UniProtKB: A0A8I6A065 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119963   ⟸   XM_063263893
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063119959   ⟸   XM_063263889
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063119957   ⟸   XM_063263887
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063119951   ⟸   XM_063263881
- Peptide Label: isoform X6
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119952   ⟸   XM_063263882
- Peptide Label: isoform X7
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119948   ⟸   XM_063263878
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063119967   ⟸   XM_063263897
- Peptide Label: isoform X26
- UniProtKB: A0A8I5ZML9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119978   ⟸   XM_063263908
- Peptide Label: isoform X39
- UniProtKB: A0A8I5ZML9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119983   ⟸   XM_063263913
- Peptide Label: isoform X44
- UniProtKB: A0A8I5ZML9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119966   ⟸   XM_063263896
- Peptide Label: isoform X25
- UniProtKB: A0A8I5ZML9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119974   ⟸   XM_063263904
- Peptide Label: isoform X34
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119979   ⟸   XM_063263909
- Peptide Label: isoform X40
- UniProtKB: A0A8I5ZML9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119976   ⟸   XM_063263906
- Peptide Label: isoform X36
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119972   ⟸   XM_063263902
- Peptide Label: isoform X32
- UniProtKB: A0A8I5ZML9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119985   ⟸   XM_063263915
- Peptide Label: isoform X47
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119981   ⟸   XM_063263911
- Peptide Label: isoform X42
- UniProtKB: A0A0G2JYY7 (UniProtKB/TrEMBL),   A0A8I5XWK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119973   ⟸   XM_063263903
- Peptide Label: isoform X33
- UniProtKB: A0A8I5ZML9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119982   ⟸   XM_063263912
- Peptide Label: isoform X43
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119977   ⟸   XM_063263907
- Peptide Label: isoform X38
- UniProtKB: A0A8I5ZML9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119984   ⟸   XM_063263914
- Peptide Label: isoform X46
- UniProtKB: A0A8I5ZML9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119980   ⟸   XM_063263910
- Peptide Label: isoform X41
- UniProtKB: A0A8I5XWK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119975   ⟸   XM_063263905
- Peptide Label: isoform X35
- UniProtKB: A0A8I5ZML9 (UniProtKB/TrEMBL)
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A1A5R1-F1-model_v2 AlphaFold A1A5R1 1-432 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695444
Promoter ID:EPDNEW_R5969
Type:initiation region
Name:Rbfox2_2
Description:RNA binding fox-1 homolog 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5970  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07118,396,338 - 118,396,398EPDNEW
RGD ID:13695446
Promoter ID:EPDNEW_R5970
Type:multiple initiation site
Name:Rbfox2_1
Description:RNA binding fox-1 homolog 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R5969  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07118,396,642 - 118,396,702EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311838 AgrOrtholog
BioCyc Gene G2FUF-32891 BioCyc
Ensembl Genes ENSRNOG00000004688 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000066431 ENTREZGENE
  ENSRNOT00000066431.2 UniProtKB/Swiss-Prot
  ENSRNOT00000090370 ENTREZGENE
  ENSRNOT00000098506 ENTREZGENE
  ENSRNOT00000113975 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7123798 IMAGE-MGC_LOAD
InterPro Fox-1_C_dom UniProtKB/Swiss-Prot
  FOX1_RRM UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RBFOX1-like UniProtKB/Swiss-Prot
  RNA-bd_Fox-1 UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
KEGG Report rno:362950 UniProtKB/Swiss-Prot
MGC_CLONE MGC:156775 IMAGE-MGC_LOAD
NCBI Gene 362950 ENTREZGENE
PANTHER ATAXIN 2-BINDING PROTEIN 1-RELATED UniProtKB/Swiss-Prot
  RNA BINDING PROTEIN FOX-1 HOMOLOG 2 UniProtKB/Swiss-Prot
Pfam Fox-1_C UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot
PhenoGen Rbfox2 PhenoGen
PIRSF Ataxin_2_bd_A2BP UniProtKB/Swiss-Prot
PROSITE RRM UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000004688 RatGTEx
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt A0A0G2JYY7 ENTREZGENE, UniProtKB/TrEMBL
  A0A249Y6E1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5XWK2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZML9 ENTREZGENE
  A0A8I5ZU26_RAT UniProtKB/TrEMBL
  A0A8I6A065 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AED5 ENTREZGENE, UniProtKB/TrEMBL
  A1A5R1 ENTREZGENE
  A6HSF3 ENTREZGENE, UniProtKB/TrEMBL
  A6HSF4 ENTREZGENE, UniProtKB/TrEMBL
  RFOX2_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-28 Rbfox2  RNA binding fox-1 homolog 2  Rbfox2  RNA binding protein, fox-1 homolog 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-04-27 Rbfox2  RNA binding protein, fox-1 homolog 2  Rbfox2  RNA binding protein, fox-1 homolog (C. elegans) 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-10 Rbfox2  RNA binding protein, fox-1 homolog (C. elegans) 2  Rbm9  RNA binding motif protein 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Rbm9  RNA binding motif protein 9   Rbm9_predicted  RNA binding motif protein 9 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rbm9_predicted  RNA binding motif protein 9 (predicted)      Symbol and Name status set to approved 70820 APPROVED