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Gene: Pals2 (protein associated with LIN7 2, MAGUK p55 family member) Rattus norvegicus

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Symbol:

Pals2

Name:

protein associated with LIN7 2, MAGUK p55 family member

RGD ID:

1311833

Description:

Predicted to be a structural constituent of postsynaptic density. Predicted to be involved in maintenance of postsynaptic density structure. Predicted to be located in dendrite; membrane; and organelle. Predicted to be active in cell-cell junction and plasma membrane. Orthologous to human PALS2 (protein associated with LIN7 2, MAGUK p55 family member); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

CH474011:EDL88200; LOC362359; MAGUK p55 subfamily member 6; membrane palmitoylated protein 6; membrane protein, palmitoylated 6; membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6); MGC189400; Mpp6; protein associated with LIN7 2, MAGUK family member

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	80,504,298 - 80,584,951 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	80,455,657 - 80,584,950 (+)	Ensembl				GRCr8
mRatBN7.2	4	79,173,488 - 79,257,542 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	79,124,806 - 79,254,140 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	84,389,410 - 84,474,228 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	80,164,949 - 80,249,755 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	78,605,243 - 78,690,062 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	79,846,506 - 79,928,977 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	79,846,521 - 79,926,703 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	144,471,089 - 144,602,046 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	78,343,494 - 78,424,470 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	74,082,633 - 74,162,987 (+)	NCBI		Celera
RGSC_v3.1	4	78,619,775 - 78,684,435 (+)	NCBI
Cytogenetic Map	4	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (EXP)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

Cuprizon (EXP)

cyclosporin A (EXP,ISO)

cytarabine (ISO)

diethylstilbestrol (ISO)

dioxygen (ISO)

diuron (EXP)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

furan (EXP)

Indeno[1,2,3-cd]pyrene (ISO)

indole-3-methanol (EXP)

ivermectin (ISO)

lead diacetate (EXP)

methapyrilene (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodiethylamine (EXP)

ozone (ISO)

p-toluidine (EXP)

paracetamol (EXP,ISO)

paraquat (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

potassium chromate (ISO)

quercetin (ISO)

rotenone (ISO)

succimer (ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cell-cell junction (IBA)

dendrite (IEA)

membrane (IEA)

plasma membrane (IBA,IEA,ISO)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	An overview of pre-ribosomal RNA processing in eukaryotes.	Henras AK, etal., Wiley Interdiscip Rev RNA. 2015 Mar-Apr;6(2):225-42. doi: 10.1002/wrna.1269. Epub 2014 Oct 27.
4.	Protein trafficking and anchoring complexes revealed by proteomic analysis of inward rectifier potassium channel (Kir2.x)-associated proteins.	Leonoudakis D, etal., J Biol Chem. 2004 May 21;279(21):22331-46. Epub 2004 Mar 15.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:10753959	PMID:12477932	PMID:15632090	PMID:20458337

Genomics

Comparative Map Data

Pals2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	80,504,298 - 80,584,951 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	80,455,657 - 80,584,950 (+)	Ensembl				GRCr8
mRatBN7.2	4	79,173,488 - 79,257,542 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	79,124,806 - 79,254,140 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	84,389,410 - 84,474,228 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	80,164,949 - 80,249,755 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	78,605,243 - 78,690,062 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	79,846,506 - 79,928,977 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	79,846,521 - 79,926,703 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	144,471,089 - 144,602,046 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	78,343,494 - 78,424,470 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	74,082,633 - 74,162,987 (+)	NCBI		Celera
RGSC_v3.1	4	78,619,775 - 78,684,435 (+)	NCBI
Cytogenetic Map	4	q24	NCBI

PALS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	24,573,452 - 24,694,193 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	24,572,936 - 24,694,193 (+)	Ensembl			hg38	GRCh38
GRCh37	7	24,613,071 - 24,733,812 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	24,579,610 - 24,694,023 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	7	24,386,324 - 24,500,737	NCBI
Celera	7	24,601,884 - 24,715,973 (+)	NCBI		Celera
Cytogenetic Map	7	p15.3	NCBI
HuRef	7	24,544,555 - 24,612,058 (+)	NCBI		HuRef
CHM1_1	7	24,614,653 - 24,729,063 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	24,711,447 - 24,832,205 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	24,664,991 - 24,779,052 (+)	NCBI

Pals2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	50,087,206 - 50,176,134 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	50,087,221 - 50,175,919 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	50,110,228 - 50,199,154 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	50,110,241 - 50,198,939 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	50,060,240 - 50,148,597 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	50,039,963 - 50,128,169 (+)	NCBI		MGSCv36	mm8
Celera	6	50,618,750 - 50,708,304 (+)	NCBI		Celera
Cytogenetic Map	6	B2.3	NCBI
cM Map	6	24.13	NCBI

Pals2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955410	26,610,758 - 26,697,553 (+)	Ensembl
ChiLan1.0	NW_004955410	26,593,123 - 26,697,553 (+)	NCBI	ChiLan1.0	ChiLan1.0

PALS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	29,430,673 - 29,550,813 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	77,755,407 - 77,873,508 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	25,248,710 - 25,368,829 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	24,853,266 - 24,973,190 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	24,899,798 - 24,967,402 (+)	Ensembl			panPan2	panpan1.1

PALS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	38,095,892 - 38,206,730 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	38,095,716 - 38,213,418 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	37,645,606 - 37,756,631 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	38,032,148 - 38,142,984 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	38,031,672 - 38,142,243 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	38,145,746 - 38,256,586 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	37,838,258 - 37,949,172 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	38,180,110 - 38,291,374 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pals2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	82,276,116 - 82,439,288 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936478	1,554,293 - 1,647,787 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936478	1,554,314 - 1,647,787 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PALS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	47,593,049 - 47,710,570 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	18	47,589,547 - 47,711,433 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	52,549,819 - 52,660,892 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PALS2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	33,681,859 - 33,785,699 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	33,682,127 - 33,737,196 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666042	70,861,748 - 70,976,955 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pals2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624739	5,884,253 - 5,970,960 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624739	5,880,989 - 5,971,570 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pals2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	90,903,917 - 90,987,895 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pals2
376 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	254
Count of miRNA genes:	168
Interacting mature miRNAs:	203
Transcripts:	ENSRNOT00000029332
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
1549843	Bw53	Body weight QTL 53		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	59753119	104753119	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	41400577	86400577	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	44425024	89425024	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
631556	Bp135	Blood pressure QTL 135		0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	80212111	119233320	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	58817672	103817672	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	71647492	116647492	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	41400603	86400603	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	75939858	140508796	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	65060960	127749483	Rat
8655906	Rf60	Renal function QTL 60	3.8		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	4	30448961	82336920	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	51085655	113588029	Rat
2317586	Eae25	Experimental allergic encephalomyelitis QTL 25	9.300000190734863		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	4	80213634	84338055	Rat
61364	Iddm2	Insulin dependent diabetes mellitus QTL 2			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	80216705	104243248	Rat
2317588	Eae27	Experimental allergic encephalomyelitis QTL 27			nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	4	69036742	114036742	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	40490442	117737312	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
4889969	Bss96	Bone structure and strength QTL 96	4.9		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	4	57613242	102613242	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
4889972	Bss97	Bone structure and strength QTL 97	5.6		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	4	57613242	102613242	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
5685009	Bmd86	Bone mineral density QTL 86	3.7		tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	4	57613242	102613242	Rat
634311	Sach7	Saccharin preference QTL 7			taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	58079875	82597589	Rat
2306547	Iddm38	Insulin dependent diabetes mellitus QTL 38			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	68353567	113353567	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
2306545	Iddm39	Insulin dependent diabetes mellitus QTL 39			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78687630	123687630	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	11706604	92690519	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	74169813	134199155	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	59836842	104836842	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	37269577	82269577	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	75939858	140508796	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	61041057	94638356	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	64209744	109209744	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63245026	129846354	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	41400577	86400577	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	57664252	127749483	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	58079875	92690793	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63224393	108224393	Rat
7394826	Bw126	Body weight QTL 126		0.002	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	63900458	88813920	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	33538597	116185060	Rat

Markers in Region

RH127669

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	79,257,277 - 79,257,496 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	79,929,841 - 79,930,059	NCBI	Rnor6.0
Rnor_5.0	4	144,601,782 - 144,602,000	UniSTS	Rnor5.0
RGSC_v3.4	4	78,427,607 - 78,427,825	UniSTS	RGSC3.4
Celera	4	74,166,124 - 74,166,342	UniSTS
RH 3.4 Map	4	499.4	UniSTS
Cytogenetic Map	4	q24	UniSTS

RH133592

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	79,174,587 - 79,174,802 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	79,847,621 - 79,847,835	NCBI	Rnor6.0
Rnor_5.0	4	144,520,440 - 144,520,654	UniSTS	Rnor5.0
RGSC_v3.4	4	78,344,594 - 78,344,808	UniSTS	RGSC3.4
Celera	4	74,083,733 - 74,083,947	UniSTS
RH 3.4 Map	4	501.4	UniSTS
Cytogenetic Map	4	q24	UniSTS

BF399535

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	79,258,825 - 79,259,075 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	79,931,389 - 79,931,638	NCBI	Rnor6.0
Rnor_5.0	4	144,603,330 - 144,603,579	UniSTS	Rnor5.0
RGSC_v3.4	4	78,429,155 - 78,429,404	UniSTS	RGSC3.4
Celera	4	74,167,667 - 74,167,916	UniSTS
RH 3.4 Map	4	499.5	UniSTS
Cytogenetic Map	4	q24	UniSTS

RH138424

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	79,253,453 - 79,253,590 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	79,926,017 - 79,926,153	NCBI	Rnor6.0
Rnor_5.0	4	144,597,958 - 144,598,094	UniSTS	Rnor5.0
Celera	4	74,162,300 - 74,162,436	UniSTS
RH 3.4 Map	1	1555.9	UniSTS
Cytogenetic Map	4	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005503249	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC169025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000029332 ⟹ ENSRNOP00000037380

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	80,455,657 - 80,584,950 (+)	Ensembl
mRatBN7.2 Ensembl	4	79,173,488 - 79,254,140 (+)	Ensembl
Rnor_6.0 Ensembl	4	79,846,521 - 79,926,703 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089973 ⟹ ENSRNOP00000073113

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	80,504,618 - 80,584,171 (+)	Ensembl
mRatBN7.2 Ensembl	4	79,124,806 - 79,253,583 (+)	Ensembl
Rnor_6.0 Ensembl	4	79,868,442 - 79,926,078 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096577 ⟹ ENSRNOP00000097400

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	80,527,313 - 80,584,950 (+)	Ensembl
mRatBN7.2 Ensembl	4	79,173,488 - 79,254,140 (+)	Ensembl

RefSeq Acc Id:

NM_001134982 ⟹ NP_001128454

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	80,504,298 - 80,584,951 (+)	NCBI
mRatBN7.2	4	79,173,488 - 79,254,141 (+)	NCBI
Rnor_6.0	4	79,846,521 - 79,926,704 (+)	NCBI
Rnor_5.0	4	144,471,089 - 144,602,046 (+)	NCBI
RGSC_v3.4	4	78,343,494 - 78,424,470 (+)	RGD
Celera	4	74,082,633 - 74,162,987 (+)	RGD

Sequence:

show sequence

CTGAGAGAGGCTGGCCGCGCGGGCCGGCGGGCAGCGGCGGCGCCCGGAGACGGGCGGAAGGCGA
GGCTGGCGGGGACGGCGGGAGCCGCCCGCCCGACCGCGAGCCCCTGAGTCGGTAGATGGGGCTA
CGCGGCGCCCGCGGCTGAGGAGAGGAGCGGCGGCGCGGAGGCGGCCGAGGTGCGAGCCGAAATG
CAGCAAGTTTTGGAAAACCTTACAGAGCTGCCCTCATCTACAGGAGCAGAAGAAATAGACCTAA
TTTTCCTCAAGGGGATTATGGAGAATCCCATTGTGAAATCACTTGCTAAGGCTCACGAGAGACT
TGAAGATTCAAAATTAGAAGCTGTCAGTGACAATAACTTGGAATTAGTGAATGAAATTCTTGAA
GATATCACTCCTCTCATAAGTGTGGATGAAAATGTGGCAGAACTGGTTGGTATACTCAAGGAGC
CTCACTTCCAGTCGCTCCTGGAGGCCCATGATATTGTGGCATCAAAGTGTTATGAATCGCCGCC
TTCAAGCCCAGAAATGAATATTCCTTCTCTCAATAATCAGTTATTGCCAGTGGACGCCATCCGT
ATTCTCGGTATTCACAAAAGAGCTGGAGAGCCATTGGGTGTAACATTCAGGGTTGAAAATAATG
ATCTGGTAATTGCCCGAATCCTTCATGGAGGAATGATAGATCGACAAGGTCTGCTTCATGTGGG
AGATATCATTAAGGAAGTCAATGGTCATGAGGTTGGAAACAACCCAAAGGAATTACAAGAATTA
TTGAAAAATATTAGTGGAAGCGTCACCCTAAAAATCTTACCAAGTTACAGAGATACTATTGCTC
CTCAGCAGGTGTTTGTCAAGTGTCATTTTGATTATAATCCATTCAATGATAACCTGATACCCTG
CAAAGAAGCTGGACTGAAGTTTTCCAAAGGAGAAATTCTTCAGATTGTAAATAGAGAAGACCCA
AATTGGTGGCAGGCTAGCCATGTGAAAGAGGGAGGAAGTGCTGGTCTGATTCCAAGCCAGTTCC
TGGAAGAGAAAAGAAAGGCATTTGTTCGCAGAGATTGGGACAATTCAGGACCCTTTTGTGGAAC
TATAAGCAACAAGAAAAAGAAAAAGATGATGTACCTCACAACCAGGAATGCAGAGTTTGATCGG
CATGAAATTCAGATCTATGAGGAAGTAGCAAAAATGCCACCCTTCCAGCGGAAAACATTAGTGT
TGATCGGAGCTCAAGGTGTGGGCAGAAGGAGTTTGAAAAACAGGTTCATAGTACTGAATCCTGC
TAGATTTGGAACAACAGTGCCATTTACTTCACGGAAGCCAAGAGAAGACGAAAAGGATGGGCAA
GCATATAAATTTGTGTCCCGATCAGAGATGGAAGCAGATATTAAAGCTGGGAAGTATCTGGAGC
ATGGGGAATATGAAGGGAACCTGTATGGAACTAAGATCGGCTCCATTCTCGACGTCGTCCAAAC
CGGACGGACTTGCATTTTGGATGTTAATCCACAAGCACTGAAGGTGCTGCGGACCTCCGAGTTC
ATGCCTTACGTGGTGTTTATTGCTGCTCCAGAGCTAGAGACTTTGCGTGCCATGCACAAGGCTG
TGGTGGACGCAGGAATCACCACCAAGCTTTTGACGGACTCTGACTTGAAGAAAACGGTGGATGA
AAGTGCCCGGATTCAGAGAGCATACAACCACTACTTTGATTTGATCATCGTAAATGACAATCTA
GACAAAGCCTTTGAGAACCTACAAACTGCCATTGAGAAACTGAGGACGGAGCCACAGTGGGTCC
CCATTAGCTGGGTGTACTGATGATTCAGTGAGGTTAACAGTTAAATAAAACTTTAAAACAGTGA
CTCAACAAGTAAACCTTCTGCTGGAGAGCACATGCGCAGGGACAGGCGCCTGCCGGCCGCACCC
AGGCATTTTTATTGTGTAGATTGAAGTAACAGTGCACTAGGCGGAATTTTTATATAATTGTGGT
TGGGAAGGTGTACTAATATATAATTTCTCTTAATTTTTCTAACTTTTTATGGATAAAACCTTTC
TATTCATATACCACATAAAGAAATGCGTTGAAGCATTTGTAAGTTTTGATTTAGTACCCTTACC
TTTTCATCAAAGGAATTTTCAGATCATTCTCTCCAACAGCTCATATTTTCACTGTGATAATGAA
TACTTGAAATAGTTTTGTAATGCTATCATTCTCATAAGTGGTTAGGGAAGGGTCAATTATTCTC
TTATTAGGGGGAAAAAAAACAGTAGCTATTGACCTTTTTCATGAACCTCGTTACAGAAGCAGAA
TTTAAATCTCAGTGTTATAGCTAGTCCACTACTATCCTGATCTGCTCAGTGCCCCCTCTACTCC
AGAGTACGGCTGTTCATCTCATCTGTACAGATAAATCAGCTCCCCTCACCCCTCTAGTGAACAC
AGCGAAGAGCGATAGCTTGCACTCTCTATGGGATTATTCTTTTCATTTGTCGCAGTGATGTGCT
GATGCCGACTGATGTTGAATATTAGTTATGGAGGCTCGGGTGGAAGCCTGGTCATGCACACAGA
GAGTGCCTTATCCTGCAAAACTTTACTCAACTTAGAGAACATTTACTTATTTTCAAATATAAAA
TTTCAAACCTAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006236496 ⟹ XP_006236558

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	80,504,346 - 80,584,172 (+)	NCBI
mRatBN7.2	4	79,173,542 - 79,257,539 (+)	NCBI
Rnor_6.0	4	79,846,506 - 79,928,977 (+)	NCBI
Rnor_5.0	4	144,471,089 - 144,602,046 (+)	NCBI

Sequence:

show sequence

GCGGGAGCGGAGCGGCTGAGAGAGGCTGGCCGCGCGGGCCGGCGGGCAGCGGCGGCGCCCGGAG
ACGGGCGGAAGGCGAGGCTGGCGGGGACGGCGGGAGCCGCCCGCCCGACCGCGAGCCCCTGAGT
CGGTAGATGGGGCTACGCGGCGCCCGCGGCTGAGGAGAGGAGCGGCGGCGCGGAGGCGGCCGAG
GTGCGAGCCGAAATGCAGCAAGTTTTGGAAAACCTTACAGAGCTGCCCTCATCTACAGGAGCAG
AAGAAATAGACCTAATTTTCCTCAAGGGGATTATGGAGAATCCCATTGTGAAATCACTTGCTAA
GGCTCACGAGAGACTTGAAGATTCAAAATTAGAAGCTGTCAGTGACAATAACTTGGAATTAGTG
AATGAAATTCTTGAAGATATCACTCCTCTCATAAGTGTGGATGAAAATGTGGCAGAACTGGTTG
GTATACTCAAGGAGCCTCACTTCCAGTCGCTCCTGGAGGCCCATGATATTGTGGCATCAAAGTG
TTATGAATCGCCGCCTTCAAGCCCAGAAATGAATATTCCTTCTCTCAATAATCAGTTATTGCCA
GTGGACGCCATCCGTATTCTCGGTATTCACAAAAGAGCTGGAGAGCCATTGGGTGTAACATTCA
GGGTTGAAAATAATGATCTGGTAATTGCCCGAATCCTTCATGGAGGAATGATAGATCGACAAGG
TCTGCTTCATGTGGGAGATATCATTAAGGAAGTCAATGGTCATGAGGTTGGAAACAACCCAAAG
GAATTACAAGAATTATTGAAAAATATTAGTGGAAGCGTCACCCTAAAAATCTTACCAAGTTACA
GAGATACTATTGCTCCTCAGCAGAGTTACGTCAATATGGAGAGGCATCCAGCCCACGTCCGTCA
GGTGTTTGTCAAGTGTCATTTTGATTATAATCCATTCAATGATAACCTGATACCCTGCAAAGAA
GCTGGACTGAAGTTTTCCAAAGGAGAAATTCTTCAGATTGTAAATAGAGAAGACCCAAATTGGT
GGCAGGCTAGCCATGTGAAAGAGGGAGGAAGTGCTGGTCTGATTCCAAGCCAGTTCCTGGAAGA
GAAAAGAAAGGCATTTGTTCGCAGAGATTGGGACAATTCAGGACCCTTTTGTGGAACTATAAGC
AACAAGAAAAAGAAAAAGATGATGTACCTCACAACCAGGAATGCAGAGTTTGATCGGCATGAAA
TTCAGATCTATGAGGAAGTAGCAAAAATGCCACCCTTCCAGCGGAAAACATTAGTGTTGATCGG
AGCTCAAGGTGTGGGCAGAAGGAGTTTGAAAAACAGGTTCATAGTACTGAATCCTGCTAGATTT
GGAACAACAGTGCCATTTACTTCACGGAAGCCAAGAGAAGACGAAAAGGATGGGCAAGCATATA
AATTTGTGTCCCGATCAGAGATGGAAGCAGATATTAAAGCTGGGAAGTATCTGGAGCATGGGGA
ATATGAAGGGAACCTGTATGGAACTAAGATCGGCTCCATTCTCGACGTCGTCCAAACCGGACGG
ACTTGCATTTTGGATGTTAATCCACAAGCACTGAAGGTGCTGCGGACCTCCGAGTTCATGCCTT
ACGTGGTGTTTATTGCTGCTCCAGAGCTAGAGACTTTGCGTGCCATGCACAAGGCTGTGGTGGA
CGCAGGAATCACCACCAAGCTTTTGACGGACTCTGACTTGAAGAAAACGGTGGATGAAAGTGCC
CGGATTCAGAGAGCATACAACCACTACTTTGATTTGATCATCGTAAATGACAATCTAGACAAAG
CCTTTGAGAACCTACAAACTGCCATTGAGAAACTGAGGACGGAGCCACAGTGGGTCCCCATTAG
CTGGGTGTACTGATGATTCAGTGAGGTTAACAGTTAAATAAAACTTTAAAACAGTGACTCAACA
AGTAAACCTTCTGCTGGAGAGCACATGCAGAGGGACAGGCGCCTGCCGGCCGCACCCAGGCATT
TTTATTGTGTAGATTGAAGTAACAGTGCACTAGGCGGAATTTTTATATAATTGTGGTTGGGAAG
GTGTACTAATATATAATTTCTCTTAATTTTTCTAACTTTTTATGGATAAAACCTTTCTATTCAT
ATACCACATAAAGAAATGCGTTGAAGCATTTGTAAGTTTTGATTTAGTACCCTTACCTTTTCAT
CAAAGGAATTTTCAGATCATTCTCTCCAACAGCTCATATTTTCACTGTGATAATGAATACTTGA
AATAGTTTTGTAATGCTATCATTCTCATAAGTGGTTAGGGAAGGGTCAATTATTCTCTTATTAG
GGGGAAAAAAAACAGTAGCTATTGACCTTTTTCATGAACCTCGTTACAGAAGCAGAATTTAAAT
CTCAGTGTTATAGCTAGTCCACTACTATCCTGATCTGCTCAGTGCCCCCTCTACTCCAGAGTAC
GGCTGTTCATCTCATCTGTACAGATAAATCAGCTCCCCTCACCCCTCTAGTGAACACAGCGAAG
AGCGATAGCTTGCACTCTCTATGGGATTATTCTTTTCATTTGTCGCAGTGATGTGCTGATGCCG
ACTGATGTTGAATATTAGTTATGGAGGCTCGGGTGGAAGCCTGGTCATGCACACAGAGAGTGCC
TTATCCTGCAAAACTTTACTCAACTTAGAGAACATTTACTTATTTTCAAATATAAAATTTCAAA
CCTATTACTTCAGTTTGGTTTTTTAAGAATAGTCAGCAAAAATATGCCTGTGCAAATGTTTGTG
ATATTTAAAGATGTCTCTAAGCTGCAAGCTGTTTGTCAATCATCAAATGTGATTTCTAAAACAG
GAAGTGATTTGTTAGGGTAGTCTCTGTTTTGTCAAAAACCAAATCCATTGAACGAACGGTTTAC
AAGATTTGGAAATAATTGCCAGTTATTGATACATACACACACCTAGCATTCATTATGTAATAGA
TACTAAGTAATGGCCTATACTCTTTAGATTTCTGTTAAAAAGTACACTTTTTTGTTTTAAGATT
AGGAACCAAGTCCTTTAGCTGCATTGACACTGTGTACTGATTTCCACGGTCACCTGGGTTGATG
CCCTCCTCTAGGATTCCTGAATGGTACATGTTCTTCCATGAACATTGACACATACTGAGACAGA
GCATCACTGAGCTTAGTTAACCTTAGTGTATATTGCTGCCAGCTTTTTAGTCAGAAGACTCACG
CTTTAAAGGGTTTGGTGCCTAAATACTGATGAGTATTTTTGGTGACAAGCTCTAGACATCTGAC
TTCTGATTTTGGCTTTCCCCTCATCAGAGTTATGTATCCATTTGTATGAAGATTGATATTGTTA
AACACAGACATGCATACAAAGGTACTTATATATGGTAAGAAGCAATATTATACATTGTTTTAAA
TTACTTTCATAATAAAACATAAGTTACCATATTAATAATTTGTAATCTTCAGGCTTTTAAATTT
TAATTCTAGAATTTCATAGCCAAAATATATATTCACACACACACAAAACACACACACACATACA
TAACACCTTTCTCATGTTAAATATAAAATTGCATAATGCATATCATCTGAACTTAACATTGTTT
CTGTTATAAATGGTACTCATGATTCATCAGCATAACCACATTAGATTTCTCCTAATGGAGATAG
GATAGTTTTGTTCACTATAATATAGATGCCAATATTATGAAAATACAAATGTTTCTCAGTGAAA
AATCACTGAATTTGAAACTCACTTTCCCATCTGAGTCCATAGAAGCCATCAGGCCTCACACAAA
GAGTCTTCCTAGGTAATGTTAACAAGGAAATGTATACTTCTCTCATTGGAAGGGCCTAACATAA
CAGACTTATTTATAATAGCTTTACTGGTATGAAAGGGCATACAGTGGTGTTCAATAATTGGAAA
TAGGTTAAAAAAATATACACACACGTGAGTGTGCTTTGGGAAGTTGTGTATCCCTAAGTATACT
AAAAGATTAGTGTCCACATTCAGCATTCAGGGTGTTGTTATTTCTTTGTAACTAATGGTTACAT
GTATAATTTCATTTTCAAATGTGCAAGTTGCTATAGAAATGATGTCTCTGAACAAGTCATTTAA
CCATAGTTAATGGAGTGAATTTAATGCCCTACAGTAGAATTTTCACCTTCAGTATTACACTGCT
TTTACTGCACAGTCTCCATTTCTGTTTTTAGTTAATATCCAGGGTCAAATACAGCAAAAGTGTT
TGTTTTGTCTGACTTGATACAATTGCAAACCATAGCTTCCTGAAATAGGACTAAACCTTAGATT
CTAGAGTAATTTATAATAAGTTGTAGAACACTTCCTTTAAAATGACAAACTGGTTATTCAAAGT
TATTTAGAAAATAGCTCAAGATAGCAGTAAAATCCAGTAGCAGGGCATTGATTATGGCCAGGCA
CTAATCTGGCCAAAATGATGATTATGCCAGACCTAGTAATCCCAGCACCCAGGAGGCTGATAGG
AGGAGTGCAAGTTGGAGTCCAGCCTGGGTAACAAGACCCCGTCTCACAAACAAGGGCCCAGGGC
TCTAATTGGGGGAGAGTGCGCCTAACACCGGTGAGATCCCAGCAACACAAGAAATGATCCAAAC
TTCAGAACAGTACTTATTTTTATATATATCAAGTATCGTGATCAGTGATTGAGGTTGATTGTCA
AGGCCACAGAATTAGTTATAATTATTTTAAATGGTTAAACTAGAAATGTAAAAAGCTTGAAACA
GTCCTCCACTATACAGAATTACAGGGTTGAGGGTCCTACCTCTGTAGTAACTAATCTTTATACT
AAATAAGGAAAAGGCAGTTCTGAAGTTTTCTGTACATAATTTACTTTGTAAAAACGTGTATATG
TATATATCCACATACACACACACACACACACACACACAAAGCTATGTGTATAATACATTCTTCC
AAAATTGATGAATAATAAAGCTAGATATATTCACCCA

hide sequence

RefSeq Acc Id:

XM_006236497 ⟹ XP_006236559

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	80,504,777 - 80,584,172 (+)	NCBI
mRatBN7.2	4	79,173,982 - 79,257,539 (+)	NCBI
Rnor_6.0	4	79,846,879 - 79,928,977 (+)	NCBI
Rnor_5.0	4	144,471,089 - 144,602,046 (+)	NCBI

Sequence:

show sequence

CCTCCCTCTGCGGTGCGGACGCCTCGGCGTGGACCAGAGCGGGCGAGCGGGCGAGGGAGCGAGC
TGGCTGGCGCCTGGGACAGACACCTTTAGGGGCTCTGAGATTCCGGGGAGGCGGCTTGCTGCAA
CTCCTGCTGCCACTTCCGAGCCACGAGGTTCCAGTTGTTTGGCTAAAGTGGCCGTGGGCGAGCA
CACTCCTCTGCGGGGGCGGTCGCCGCTCAGCGCGTGCTCTCGGAGCCAGGACACATTTGTCTGA
AAGCAGAAAGAAATGCAGCAAGTTTTGGAAAACCTTACAGAGCTGCCCTCATCTACAGGAGCAG
AAGAAATAGACCTAATTTTCCTCAAGGGGATTATGGAGAATCCCATTGTGAAATCACTTGCTAA
GGCTCACGAGAGACTTGAAGATTCAAAATTAGAAGCTGTCAGTGACAATAACTTGGAATTAGTG
AATGAAATTCTTGAAGATATCACTCCTCTCATAAGTGTGGATGAAAATGTGGCAGAACTGGTTG
GTATACTCAAGGAGCCTCACTTCCAGTCGCTCCTGGAGGCCCATGATATTGTGGCATCAAAGTG
TTATGAATCGCCGCCTTCAAGCCCAGAAATGAATATTCCTTCTCTCAATAATCAGTTATTGCCA
GTGGACGCCATCCGTATTCTCGGTATTCACAAAAGAGCTGGAGAGCCATTGGGTGTAACATTCA
GGGTTGAAAATAATGATCTGGTAATTGCCCGAATCCTTCATGGAGGAATGATAGATCGACAAGG
TCTGCTTCATGTGGGAGATATCATTAAGGAAGTCAATGGTCATGAGGTTGGAAACAACCCAAAG
GAATTACAAGAATTATTGAAAAATATTAGTGGAAGCGTCACCCTAAAAATCTTACCAAGTTACA
GAGATACTATTGCTCCTCAGCAGAGTTACGTCAATATGGAGAGGCATCCAGCCCACGTCCGTCA
GGTGTTTGTCAAGTGTCATTTTGATTATAATCCATTCAATGATAACCTGATACCCTGCAAAGAA
GCTGGACTGAAGTTTTCCAAAGGAGAAATTCTTCAGATTGTAAATAGAGAAGACCCAAATTGGT
GGCAGGCTAGCCATGTGAAAGAGGGAGGAAGTGCTGGTCTGATTCCAAGCCAGTTCCTGGAAGA
GAAAAGAAAGGCATTTGTTCGCAGAGATTGGGACAATTCAGGACCCTTTTGTGGAACTATAAGC
AACAAGAAAAAGAAAAAGATGATGTACCTCACAACCAGGAATGCAGAGTTTGATCGGCATGAAA
TTCAGATCTATGAGGAAGTAGCAAAAATGCCACCCTTCCAGCGGAAAACATTAGTGTTGATCGG
AGCTCAAGGTGTGGGCAGAAGGAGTTTGAAAAACAGGTTCATAGTACTGAATCCTGCTAGATTT
GGAACAACAGTGCCATTTACTTCACGGAAGCCAAGAGAAGACGAAAAGGATGGGCAAGCATATA
AATTTGTGTCCCGATCAGAGATGGAAGCAGATATTAAAGCTGGGAAGTATCTGGAGCATGGGGA
ATATGAAGGGAACCTGTATGGAACTAAGATCGGCTCCATTCTCGACGTCGTCCAAACCGGACGG
ACTTGCATTTTGGATGTTAATCCACAAGCACTGAAGGTGCTGCGGACCTCCGAGTTCATGCCTT
ACGTGGTGTTTATTGCTGCTCCAGAGCTAGAGACTTTGCGTGCCATGCACAAGGCTGTGGTGGA
CGCAGGAATCACCACCAAGCTTTTGACGGACTCTGACTTGAAGAAAACGGTGGATGAAAGTGCC
CGGATTCAGAGAGCATACAACCACTACTTTGATTTGATCATCGTAAATGACAATCTAGACAAAG
CCTTTGAGAACCTACAAACTGCCATTGAGAAACTGAGGACGGAGCCACAGTGGGTCCCCATTAG
CTGGGTGTACTGATGATTCAGTGAGGTTAACAGTTAAATAAAACTTTAAAACAGTGACTCAACA
AGTAAACCTTCTGCTGGAGAGCACATGCAGAGGGACAGGCGCCTGCCGGCCGCACCCAGGCATT
TTTATTGTGTAGATTGAAGTAACAGTGCACTAGGCGGAATTTTTATATAATTGTGGTTGGGAAG
GTGTACTAATATATAATTTCTCTTAATTTTTCTAACTTTTTATGGATAAAACCTTTCTATTCAT
ATACCACATAAAGAAATGCGTTGAAGCATTTGTAAGTTTTGATTTAGTACCCTTACCTTTTCAT
CAAAGGAATTTTCAGATCATTCTCTCCAACAGCTCATATTTTCACTGTGATAATGAATACTTGA
AATAGTTTTGTAATGCTATCATTCTCATAAGTGGTTAGGGAAGGGTCAATTATTCTCTTATTAG
GGGGAAAAAAAACAGTAGCTATTGACCTTTTTCATGAACCTCGTTACAGAAGCAGAATTTAAAT
CTCAGTGTTATAGCTAGTCCACTACTATCCTGATCTGCTCAGTGCCCCCTCTACTCCAGAGTAC
GGCTGTTCATCTCATCTGTACAGATAAATCAGCTCCCCTCACCCCTCTAGTGAACACAGCGAAG
AGCGATAGCTTGCACTCTCTATGGGATTATTCTTTTCATTTGTCGCAGTGATGTGCTGATGCCG
ACTGATGTTGAATATTAGTTATGGAGGCTCGGGTGGAAGCCTGGTCATGCACACAGAGAGTGCC
TTATCCTGCAAAACTTTACTCAACTTAGAGAACATTTACTTATTTTCAAATATAAAATTTCAAA
CCTATTACTTCAGTTTGGTTTTTTAAGAATAGTCAGCAAAAATATGCCTGTGCAAATGTTTGTG
ATATTTAAAGATGTCTCTAAGCTGCAAGCTGTTTGTCAATCATCAAATGTGATTTCTAAAACAG
GAAGTGATTTGTTAGGGTAGTCTCTGTTTTGTCAAAAACCAAATCCATTGAACGAACGGTTTAC
AAGATTTGGAAATAATTGCCAGTTATTGATACATACACACACCTAGCATTCATTATGTAATAGA
TACTAAGTAATGGCCTATACTCTTTAGATTTCTGTTAAAAAGTACACTTTTTTGTTTTAAGATT
AGGAACCAAGTCCTTTAGCTGCATTGACACTGTGTACTGATTTCCACGGTCACCTGGGTTGATG
CCCTCCTCTAGGATTCCTGAATGGTACATGTTCTTCCATGAACATTGACACATACTGAGACAGA
GCATCACTGAGCTTAGTTAACCTTAGTGTATATTGCTGCCAGCTTTTTAGTCAGAAGACTCACG
CTTTAAAGGGTTTGGTGCCTAAATACTGATGAGTATTTTTGGTGACAAGCTCTAGACATCTGAC
TTCTGATTTTGGCTTTCCCCTCATCAGAGTTATGTATCCATTTGTATGAAGATTGATATTGTTA
AACACAGACATGCATACAAAGGTACTTATATATGGTAAGAAGCAATATTATACATTGTTTTAAA
TTACTTTCATAATAAAACATAAGTTACCATATTAATAATTTGTAATCTTCAGGCTTTTAAATTT
TAATTCTAGAATTTCATAGCCAAAATATATATTCACACACACACAAAACACACACACACATACA
TAACACCTTTCTCATGTTAAATATAAAATTGCATAATGCATATCATCTGAACTTAACATTGTTT
CTGTTATAAATGGTACTCATGATTCATCAGCATAACCACATTAGATTTCTCCTAATGGAGATAG
GATAGTTTTGTTCACTATAATATAGATGCCAATATTATGAAAATACAAATGTTTCTCAGTGAAA
AATCACTGAATTTGAAACTCACTTTCCCATCTGAGTCCATAGAAGCCATCAGGCCTCACACAAA
GAGTCTTCCTAGGTAATGTTAACAAGGAAATGTATACTTCTCTCATTGGAAGGGCCTAACATAA
CAGACTTATTTATAATAGCTTTACTGGTATGAAAGGGCATACAGTGGTGTTCAATAATTGGAAA
TAGGTTAAAAAAATATACACACACGTGAGTGTGCTTTGGGAAGTTGTGTATCCCTAAGTATACT
AAAAGATTAGTGTCCACATTCAGCATTCAGGGTGTTGTTATTTCTTTGTAACTAATGGTTACAT
GTATAATTTCATTTTCAAATGTGCAAGTTGCTATAGAAATGATGTCTCTGAACAAGTCATTTAA
CCATAGTTAATGGAGTGAATTTAATGCCCTACAGTAGAATTTTCACCTTCAGTATTACACTGCT
TTTACTGCACAGTCTCCATTTCTGTTTTTAGTTAATATCCAGGGTCAAATACAGCAAAAGTGTT
TGTTTTGTCTGACTTGATACAATTGCAAACCATAGCTTCCTGAAATAGGACTAAACCTTAGATT
CTAGAGTAATTTATAATAAGTTGTAGAACACTTCCTTTAAAATGACAAACTGGTTATTCAAAGT
TATTTAGAAAATAGCTCAAGATAGCAGTAAAATCCAGTAGCAGGGCATTGATTATGGCCAGGCA
CTAATCTGGCCAAAATGATGATTATGCCAGACCTAGTAATCCCAGCACCCAGGAGGCTGATAGG
AGGAGTGCAAGTTGGAGTCCAGCCTGGGTAACAAGACCCCGTCTCACAAACAAGGGCCCAGGGC
TCTAATTGGGGGAGAGTGCGCCTAACACCGGTGAGATCCCAGCAACACAAGAAATGATCCAAAC
TTCAGAACAGTACTTATTTTTATATATATCAAGTATCGTGATCAGTGATTGAGGTTGATTGTCA
AGGCCACAGAATTAGTTATAATTATTTTAAATGGTTAAACTAGAAATGTAAAAAGCTTGAAACA
GTCCTCCACTATACAGAATTACAGGGTTGAGGGTCCTACCTCTGTAGTAACTAATCTTTATACT
AAATAAGGAAAAGGCAGTTCTGAAGTTTTCTGTACATAATTTACTTTGTAAAAACGTGTATATG
TATATATCCACATACACACACACACACACACACACACAAAGCTATGTGTATAATACATTCTTCC
AAAATTGATGAATAATAAAGCTAGATATATTCACCCA

hide sequence

RefSeq Acc Id:

XM_008762897 ⟹ XP_008761119

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	80,504,968 - 80,584,172 (+)	NCBI
mRatBN7.2	4	79,174,168 - 79,257,542 (+)	NCBI
Rnor_6.0	4	79,847,153 - 79,928,977 (+)	NCBI

Sequence:

show sequence

CTTCTTTTCCCTTCTATTTTGGCCGGACGGCAGGCCGGAGAGGAGTAGATGGAAGATCAGACAG
CGCGGTGACAGCTTGTGGATTGGTTGGGGTGTATTTGGTTATTTTTCTTGCGGGGGGACTCTTT
TTTTTTTTTTAAACACTTTATTGGGAGTTTATTCTCAAGGTACCAGTTCCTGGGATCGCTGCTC
GAGATAACATTCATTAAACTCCCCTTTTCTGGGAAATGCAGCAAGTTTTGGAAAACCTTACAGA
GCTGCCCTCATCTACAGGAGCAGAAGAAATAGACCTAATTTTCCTCAAGGGGATTATGGAGAAT
CCCATTGTGAAATCACTTGCTAAGGCTCACGAGAGACTTGAAGATTCAAAATTAGAAGCTGTCA
GTGACAATAACTTGGAATTAGTGAATGAAATTCTTGAAGATATCACTCCTCTCATAAGTGTGGA
TGAAAATGTGGCAGAACTGGTTGGTATACTCAAGGAGCCTCACTTCCAGTCGCTCCTGGAGGCC
CATGATATTGTGGCATCAAAGTGTTATGAATCGCCGCCTTCAAGCCCAGAAATGAATATTCCTT
CTCTCAATAATCAGTTATTGCCAGTGGACGCCATCCGTATTCTCGGTATTCACAAAAGAGCTGG
AGAGCCATTGGGTGTAACATTCAGGGTTGAAAATAATGATCTGGTAATTGCCCGAATCCTTCAT
GGAGGAATGATAGATCGACAAGGTCTGCTTCATGTGGGAGATATCATTAAGGAAGTCAATGGTC
ATGAGGTTGGAAACAACCCAAAGGAATTACAAGAATTATTGAAAAATATTAGTGGAAGCGTCAC
CCTAAAAATCTTACCAAGTTACAGAGATACTATTGCTCCTCAGCAGAGTTACGTCAATATGGAG
AGGCATCCAGCCCACGTCCGTCAGGTGTTTGTCAAGTGTCATTTTGATTATAATCCATTCAATG
ATAACCTGATACCCTGCAAAGAAGCTGGACTGAAGTTTTCCAAAGGAGAAATTCTTCAGATTGT
AAATAGAGAAGACCCAAATTGGTGGCAGGCTAGCCATGTGAAAGAGGGAGGAAGTGCTGGTCTG
ATTCCAAGCCAGTTCCTGGAAGAGAAAAGAAAGGCATTTGTTCGCAGAGATTGGGACAATTCAG
GACCCTTTTGTGGAACTATAAGCAACAAGAAAAAGAAAAAGATGATGTACCTCACAACCAGGAA
TGCAGAGTTTGATCGGCATGAAATTCAGATCTATGAGGAAGTAGCAAAAATGCCACCCTTCCAG
CGGAAAACATTAGTGTTGATCGGAGCTCAAGGTGTGGGCAGAAGGAGTTTGAAAAACAGGTTCA
TAGTACTGAATCCTGCTAGATTTGGAACAACAGTGCCATTTACTTCACGGAAGCCAAGAGAAGA
CGAAAAGGATGGGCAAGCATATAAATTTGTGTCCCGATCAGAGATGGAAGCAGATATTAAAGCT
GGGAAGTATCTGGAGCATGGGGAATATGAAGGGAACCTGTATGGAACTAAGATCGGCTCCATTC
TCGACGTCGTCCAAACCGGACGGACTTGCATTTTGGATGTTAATCCACAAGCACTGAAGGTGCT
GCGGACCTCCGAGTTCATGCCTTACGTGGTGTTTATTGCTGCTCCAGAGCTAGAGACTTTGCGT
GCCATGCACAAGGCTGTGGTGGACGCAGGAATCACCACCAAGCTTTTGACGGACTCTGACTTGA
AGAAAACGGTGGATGAAAGTGCCCGGATTCAGAGAGCATACAACCACTACTTTGATTTGATCAT
CGTAAATGACAATCTAGACAAAGCCTTTGAGAACCTACAAACTGCCATTGAGAAACTGAGGACG
GAGCCACAGTGGGTCCCCATTAGCTGGGTGTACTGATGATTCAGTGAGGTTAACAGTTAAATAA
AACTTTAAAACAGTGACTCAACAAGTAAACCTTCTGCTGGAGAGCACATGCAGAGGGACAGGCG
CCTGCCGGCCGCACCCAGGCATTTTTATTGTGTAGATTGAAGTAACAGTGCACTAGGCGGAATT
TTTATATAATTGTGGTTGGGAAGGTGTACTAATATATAATTTCTCTTAATTTTTCTAACTTTTT
ATGGATAAAACCTTTCTATTCATATACCACATAAAGAAATGCGTTGAAGCATTTGTAAGTTTTG
ATTTAGTACCCTTACCTTTTCATCAAAGGAATTTTCAGATCATTCTCTCCAACAGCTCATATTT
TCACTGTGATAATGAATACTTGAAATAGTTTTGTAATGCTATCATTCTCATAAGTGGTTAGGGA
AGGGTCAATTATTCTCTTATTAGGGGGAAAAAAAACAGTAGCTATTGACCTTTTTCATGAACCT
CGTTACAGAAGCAGAATTTAAATCTCAGTGTTATAGCTAGTCCACTACTATCCTGATCTGCTCA
GTGCCCCCTCTACTCCAGAGTACGGCTGTTCATCTCATCTGTACAGATAAATCAGCTCCCCTCA
CCCCTCTAGTGAACACAGCGAAGAGCGATAGCTTGCACTCTCTATGGGATTATTCTTTTCATTT
GTCGCAGTGATGTGCTGATGCCGACTGATGTTGAATATTAGTTATGGAGGCTCGGGTGGAAGCC
TGGTCATGCACACAGAGAGTGCCTTATCCTGCAAAACTTTACTCAACTTAGAGAACATTTACTT
ATTTTCAAATATAAAATTTCAAACCTATTACTTCAGTTTGGTTTTTTAAGAATAGTCAGCAAAA
ATATGCCTGTGCAAATGTTTGTGATATTTAAAGATGTCTCTAAGCTGCAAGCTGTTTGTCAATC
ATCAAATGTGATTTCTAAAACAGGAAGTGATTTGTTAGGGTAGTCTCTGTTTTGTCAAAAACCA
AATCCATTGAACGAACGGTTTACAAGATTTGGAAATAATTGCCAGTTATTGATACATACACACA
CCTAGCATTCATTATGTAATAGATACTAAGTAATGGCCTATACTCTTTAGATTTCTGTTAAAAA
GTACACTTTTTTGTTTTAAGATTAGGAACCAAGTCCTTTAGCTGCATTGACACTGTGTACTGAT
TTCCACGGTCACCTGGGTTGATGCCCTCCTCTAGGATTCCTGAATGGTACATGTTCTTCCATGA
ACATTGACACATACTGAGACAGAGCATCACTGAGCTTAGTTAACCTTAGTGTATATTGCTGCCA
GCTTTTTAGTCAGAAGACTCACGCTTTAAAGGGTTTGGTGCCTAAATACTGATGAGTATTTTTG
GTGACAAGCTCTAGACATCTGACTTCTGATTTTGGCTTTCCCCTCATCAGAGTTATGTATCCAT
TTGTATGAAGATTGATATTGTTAAACACAGACATGCATACAAAGGTACTTATATATGGTAAGAA
GCAATATTATACATTGTTTTAAATTACTTTCATAATAAAACATAAGTTACCATATTAATAATTT
GTAATCTTCAGGCTTTTAAATTTTAATTCTAGAATTTCATAGCCAAAATATATATTCACACACA
CACAAAACACACACACACATACATAACACCTTTCTCATGTTAAATATAAAATTGCATAATGCAT
ATCATCTGAACTTAACATTGTTTCTGTTATAAATGGTACTCATGATTCATCAGCATAACCACAT
TAGATTTCTCCTAATGGAGATAGGATAGTTTTGTTCACTATAATATAGATGCCAATATTATGAA
AATACAAATGTTTCTCAGTGAAAAATCACTGAATTTGAAACTCACTTTCCCATCTGAGTCCATA
GAAGCCATCAGGCCTCACACAAAGAGTCTTCCTAGGTAATGTTAACAAGGAAATGTATACTTCT
CTCATTGGAAGGGCCTAACATAACAGACTTATTTATAATAGCTTTACTGGTATGAAAGGGCATA
CAGTGGTGTTCAATAATTGGAAATAGGTTAAAAAAATATACACACACGTGAGTGTGCTTTGGGA
AGTTGTGTATCCCTAAGTATACTAAAAGATTAGTGTCCACATTCAGCATTCAGGGTGTTGTTAT
TTCTTTGTAACTAATGGTTACATGTATAATTTCATTTTCAAATGTGCAAGTTGCTATAGAAATG
ATGTCTCTGAACAAGTCATTTAACCATAGTTAATGGAGTGAATTTAATGCCCTACAGTAGAATT
TTCACCTTCAGTATTACACTGCTTTTACTGCACAGTCTCCATTTCTGTTTTTAGTTAATATCCA
GGGTCAAATACAGCAAAAGTGTTTGTTTTGTCTGACTTGATACAATTGCAAACCATAGCTTCCT
GAAATAGGACTAAACCTTAGATTCTAGAGTAATTTATAATAAGTTGTAGAACACTTCCTTTAAA
ATGACAAACTGGTTATTCAAAGTTATTTAGAAAATAGCTCAAGATAGCAGTAAAATCCAGTAGC
AGGGCATTGATTATGGCCAGGCACTAATCTGGCCAAAATGATGATTATGCCAGACCTAGTAATC
CCAGCACCCAGGAGGCTGATAGGAGGAGTGCAAGTTGGAGTCCAGCCTGGGTAACAAGACCCCG
TCTCACAAACAAGGGCCCAGGGCTCTAATTGGGGGAGAGTGCGCCTAACACCGGTGAGATCCCA
GCAACACAAGAAATGATCCAAACTTCAGAACAGTACTTATTTTTATATATATCAAGTATCGTGA
TCAGTGATTGAGGTTGATTGTCAAGGCCACAGAATTAGTTATAATTATTTTAAATGGTTAAACT
AGAAATGTAAAAAGCTTGAAACAGTCCTCCACTATACAGAATTACAGGGTTGAGGGTCCTACCT
CTGTAGTAACTAATCTTTATACTAAATAAGGAAAAGGCAGTTCTGAAGTTTTCTGTACATAATT
TACTTTGTAAAAACGTGTATATGTATATATCCACATACACACACACACACACACACACACAAAG
CTATGTGTATAATACATTCTTCCAAAATTGATGAATAATAAAGCTAGATATATTCACCCA

hide sequence

RefSeq Acc Id:

XM_039107784 ⟹ XP_038963712

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	80,504,348 - 80,584,172 (+)	NCBI
mRatBN7.2	4	79,173,538 - 79,257,539 (+)	NCBI

RefSeq Acc Id:

XM_039107785 ⟹ XP_038963713

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	80,504,784 - 80,584,172 (+)	NCBI
mRatBN7.2	4	79,173,974 - 79,257,539 (+)	NCBI

RefSeq Acc Id:

XM_039107786 ⟹ XP_038963714

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	80,504,909 - 80,584,172 (+)	NCBI
mRatBN7.2	4	79,174,168 - 79,257,542 (+)	NCBI

RefSeq Acc Id:

XM_039107787 ⟹ XP_038963715

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	80,504,336 - 80,584,172 (+)	NCBI
mRatBN7.2	4	79,173,532 - 79,257,539 (+)	NCBI

RefSeq Acc Id:

XM_039107788 ⟹ XP_038963716

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	80,527,493 - 80,584,172 (+)	NCBI
mRatBN7.2	4	79,207,654 - 79,257,542 (+)	NCBI

RefSeq Acc Id:

XM_063286254 ⟹ XP_063142324

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	80,527,493 - 80,584,172 (+)	NCBI

RefSeq Acc Id:

XM_063286255 ⟹ XP_063142325

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	80,527,422 - 80,584,172 (+)	NCBI

RefSeq Acc Id:

XM_063286256 ⟹ XP_063142326

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	80,527,422 - 80,584,172 (+)	NCBI

RefSeq Acc Id:

XR_005503249

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	80,527,493 - 80,581,662 (+)	NCBI
mRatBN7.2	4	79,207,654 - 79,250,958 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128454	(Get FASTA)	NCBI Sequence Viewer
	XP_006236558	(Get FASTA)	NCBI Sequence Viewer
	XP_006236559	(Get FASTA)	NCBI Sequence Viewer
	XP_008761119	(Get FASTA)	NCBI Sequence Viewer
	XP_038963712	(Get FASTA)	NCBI Sequence Viewer
	XP_038963713	(Get FASTA)	NCBI Sequence Viewer
	XP_038963714	(Get FASTA)	NCBI Sequence Viewer
	XP_038963715	(Get FASTA)	NCBI Sequence Viewer
	XP_038963716	(Get FASTA)	NCBI Sequence Viewer
	XP_063142324	(Get FASTA)	NCBI Sequence Viewer
	XP_063142325	(Get FASTA)	NCBI Sequence Viewer
	XP_063142326	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI69025	(Get FASTA)	NCBI Sequence Viewer
	EDL88200	(Get FASTA)	NCBI Sequence Viewer
	EDL88201	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037380
	ENSRNOP00000037380.6
	ENSRNOP00000073113
	ENSRNOP00000073113.3
	ENSRNOP00000097400
	ENSRNOP00000097400.2

RefSeq Acc Id:

NP_001128454 ⟸ NM_001134982

- UniProtKB:

B5DFE0 (UniProtKB/TrEMBL), D3ZW03 (UniProtKB/TrEMBL), A0A9K3Y6Q0 (UniProtKB/TrEMBL), A0A0G2K4N7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEIL
EDITPLISVDENVAELVGILKEPHFQSLLEAHDIVASKCYESPPSSPEMNIPSLNNQLLPVDAI
RILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQE
LLKNISGSVTLKILPSYRDTIAPQQVFVKCHFDYNPFNDNLIPCKEAGLKFSKGEILQIVNRED
PNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISNKKKKKMMYLTTRNAEFD
RHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPARFGTTVPFTSRKPREDEKDG
QAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIGSILDVVQTGRTCILDVNPQALKVLRTSE
FMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQRAYNHYFDLIIVNDN
LDKAFENLQTAIEKLRTEPQWVPISWVY

hide sequence

RefSeq Acc Id:	XP_006236558 ⟸ XM_006236496
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GMH8 (UniProtKB/TrEMBL), A6K0L7 (UniProtKB/TrEMBL), A0A0G2K4N7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEIL EDITPLISVDENVAELVGILKEPHFQSLLEAHDIVASKCYESPPSSPEMNIPSLNNQLLPVDAI RILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQE LLKNISGSVTLKILPSYRDTIAPQQSYVNMERHPAHVRQVFVKCHFDYNPFNDNLIPCKEAGLK FSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISNKKK KKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPARFGTTV PFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIGSILDVVQTGRTCIL DVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQR AYNHYFDLIIVNDNLDKAFENLQTAIEKLRTEPQWVPISWVY hide sequence

RefSeq Acc Id:	XP_006236559 ⟸ XM_006236497
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GMH8 (UniProtKB/TrEMBL), A6K0L7 (UniProtKB/TrEMBL), A0A0G2K4N7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEIL EDITPLISVDENVAELVGILKEPHFQSLLEAHDIVASKCYESPPSSPEMNIPSLNNQLLPVDAI RILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQE LLKNISGSVTLKILPSYRDTIAPQQSYVNMERHPAHVRQVFVKCHFDYNPFNDNLIPCKEAGLK FSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISNKKK KKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPARFGTTV PFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIGSILDVVQTGRTCIL DVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQR AYNHYFDLIIVNDNLDKAFENLQTAIEKLRTEPQWVPISWVY hide sequence

RefSeq Acc Id:	XP_008761119 ⟸ XM_008762897
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GMH8 (UniProtKB/TrEMBL), A6K0L7 (UniProtKB/TrEMBL), A0A0G2K4N7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQQVLENLTELPSSTGAEEIDLIFLKGIMENPIVKSLAKAHERLEDSKLEAVSDNNLELVNEIL EDITPLISVDENVAELVGILKEPHFQSLLEAHDIVASKCYESPPSSPEMNIPSLNNQLLPVDAI RILGIHKRAGEPLGVTFRVENNDLVIARILHGGMIDRQGLLHVGDIIKEVNGHEVGNNPKELQE LLKNISGSVTLKILPSYRDTIAPQQSYVNMERHPAHVRQVFVKCHFDYNPFNDNLIPCKEAGLK FSKGEILQIVNREDPNWWQASHVKEGGSAGLIPSQFLEEKRKAFVRRDWDNSGPFCGTISNKKK KKMMYLTTRNAEFDRHEIQIYEEVAKMPPFQRKTLVLIGAQGVGRRSLKNRFIVLNPARFGTTV PFTSRKPREDEKDGQAYKFVSRSEMEADIKAGKYLEHGEYEGNLYGTKIGSILDVVQTGRTCIL DVNPQALKVLRTSEFMPYVVFIAAPELETLRAMHKAVVDAGITTKLLTDSDLKKTVDESARIQR AYNHYFDLIIVNDNLDKAFENLQTAIEKLRTEPQWVPISWVY hide sequence

Ensembl Acc Id:

ENSRNOP00000073113 ⟸ ENSRNOT00000089973

Ensembl Acc Id:

ENSRNOP00000037380 ⟸ ENSRNOT00000029332

RefSeq Acc Id:	XP_038963715 ⟸ XM_039107787
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GMH8 (UniProtKB/TrEMBL), A6K0L7 (UniProtKB/TrEMBL), A0A0G2K4N7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963712 ⟸ XM_039107784
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GMH8 (UniProtKB/TrEMBL), A6K0L7 (UniProtKB/TrEMBL), A0A0G2K4N7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963713 ⟸ XM_039107785
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GMH8 (UniProtKB/TrEMBL), A6K0L7 (UniProtKB/TrEMBL), A0A0G2K4N7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963714 ⟸ XM_039107786
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6GMH8 (UniProtKB/TrEMBL), A6K0L7 (UniProtKB/TrEMBL), A0A0G2K4N7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963716 ⟸ XM_039107788
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2K4N7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000097400 ⟸ ENSRNOT00000096577

RefSeq Acc Id:	XP_063142325 ⟸ XM_063286255
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2K4N7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142326 ⟸ XM_063286256
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2K4N7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142324 ⟸ XM_063286254
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K4N7 (UniProtKB/TrEMBL)

Protein Domains

Guanylate kinase-like L27 PDZ SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K4N7-F1-model_v2	AlphaFold	A0A0G2K4N7	1-557	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693042

Promoter ID:

EPDNEW_R3566

Type:

initiation region

Name:

Mpp6_1

Description:

membrane palmitoylated protein 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	79,846,486 - 79,846,546	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311833	AgrOrtholog
BioCyc Gene	G2FUF-44899	BioCyc
Ensembl Genes	ENSRNOG00000021579	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000029332	ENTREZGENE
	ENSRNOT00000029332.8	UniProtKB/TrEMBL
	ENSRNOT00000089973	ENTREZGENE
	ENSRNOT00000089973.3	UniProtKB/TrEMBL
	ENSRNOT00000096577	ENTREZGENE
	ENSRNOT00000096577.2	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
	L27 domain	UniProtKB/TrEMBL
	SH3 Domains	UniProtKB/TrEMBL
InterPro	Guanylate_kin	UniProtKB/TrEMBL
	Guanylate_kin/L-typ_Ca_channel	UniProtKB/TrEMBL
	Guanylate_kinase_CS	UniProtKB/TrEMBL
	L27	UniProtKB/TrEMBL
	L27_C	UniProtKB/TrEMBL
	L27_dom_sf	UniProtKB/TrEMBL
	MAGUK	UniProtKB/TrEMBL
	MPP6_SH3	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	PDZ/DHR/GLGF	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
	SH3-like_dom	UniProtKB/TrEMBL
	SH3_domain	UniProtKB/TrEMBL
KEGG Report	rno:362359	UniProtKB/TrEMBL
NCBI Gene	362359	ENTREZGENE
PANTHER	MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK	UniProtKB/TrEMBL
Pfam	Guanylate_kin	UniProtKB/TrEMBL
	L27	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
	SH3_2	UniProtKB/TrEMBL
PhenoGen	Pals2	PhenoGen
PROSITE	GUANYLATE_KINASE_1	UniProtKB/TrEMBL
	GUANYLATE_KINASE_2	UniProtKB/TrEMBL
	L27	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000021579	RatGTEx
SMART	GuKc	UniProtKB/TrEMBL
	L27	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
Superfamily-SCOP	PDZ	UniProtKB/TrEMBL
	SH3	UniProtKB/TrEMBL
	SSF101288	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
UniProt	A0A0G2K4N7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GMH8	ENTREZGENE, UniProtKB/TrEMBL
	A0A9K3Y6Q0	ENTREZGENE, UniProtKB/TrEMBL
	A6K0L7	ENTREZGENE, UniProtKB/TrEMBL
	B5DFE0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZW03	ENTREZGENE
UniProt Secondary	D3ZW03	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-09-23	Pals2	protein associated with LIN7 2, MAGUK p55 family member	Pals2	protein associated with LIN7 2, MAGUK family member	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2021-03-09	Pals2	protein associated with LIN7 2, MAGUK family member	Mpp6	membrane palmitoylated protein 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-04-14	Mpp6	membrane palmitoylated protein 6	Mpp6	membrane protein, palmitoylated 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-12-10	Mpp6	membrane protein, palmitoylated 6	Mpp6	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Mpp6	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	Mpp6_predicted	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Mpp6_predicted	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations