Tspan13 (tetraspanin 13) - Rat Genome Database

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Gene: Tspan13 (tetraspanin 13) Rattus norvegicus
Analyze
Symbol: Tspan13
Name: tetraspanin 13
RGD ID: 1311788
Description: Predicted to enable calcium channel regulator activity. Predicted to act upstream of or within regulation of calcium ion transmembrane transport. Predicted to be located in plasma membrane. Orthologous to human TSPAN13 (tetraspanin 13); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC366602; MGC109170; tetraspanin-13; Tm4sf13; transmembrane 4 superfamily member 13; tspan-13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8658,466,051 - 58,492,804 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl658,465,684 - 58,492,819 (-)EnsemblGRCr8
mRatBN7.2652,738,748 - 52,765,503 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl652,738,758 - 52,765,547 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx653,029,684 - 53,058,778 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0653,344,554 - 53,373,648 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0652,809,907 - 52,836,725 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0655,497,659 - 55,524,415 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl655,497,658 - 55,524,436 (-)Ensemblrn6Rnor6.0
Rnor_5.0665,111,946 - 65,138,702 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4654,726,558 - 54,753,312 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera651,885,317 - 51,912,070 (-)NCBICelera
RGSC_v3.1654,729,683 - 54,756,438 (-)NCBI
Cytogenetic Map6q16NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (EXP,ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
dibenz[a,h]anthracene  (ISO)
dibenzo[a,l]pyrene  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
L-methionine  (ISO)
lead diacetate  (ISO)
methimazole  (EXP)
methylisothiazolinone  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pravastatin  (EXP,ISO)
progesterone  (ISO)
rotenone  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (ISO)
triadimefon  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vinclozolin  (EXP)
zaragozic acid A  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)
plasma membrane  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:23648579  


Genomics

Comparative Map Data
Tspan13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8658,466,051 - 58,492,804 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl658,465,684 - 58,492,819 (-)EnsemblGRCr8
mRatBN7.2652,738,748 - 52,765,503 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl652,738,758 - 52,765,547 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx653,029,684 - 53,058,778 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0653,344,554 - 53,373,648 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0652,809,907 - 52,836,725 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0655,497,659 - 55,524,415 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl655,497,658 - 55,524,436 (-)Ensemblrn6Rnor6.0
Rnor_5.0665,111,946 - 65,138,702 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4654,726,558 - 54,753,312 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera651,885,317 - 51,912,070 (-)NCBICelera
RGSC_v3.1654,729,683 - 54,756,438 (-)NCBI
Cytogenetic Map6q16NCBI
TSPAN13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38716,753,755 - 16,784,536 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl716,753,745 - 16,784,536 (+)Ensemblhg38GRCh38
GRCh37716,793,380 - 16,824,161 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36716,759,876 - 16,790,686 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34716,566,626 - 16,597,399NCBI
Celera716,773,658 - 16,804,467 (+)NCBICelera
Cytogenetic Map7p21.1NCBI
HuRef716,680,509 - 16,711,316 (+)NCBIHuRef
CHM1_1716,793,073 - 16,823,884 (+)NCBICHM1_1
T2T-CHM13v2.0716,883,444 - 16,914,227 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2716,847,009 - 16,877,818 (+)NCBI
Tspan13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391236,064,554 - 36,092,477 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1236,064,556 - 36,092,499 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381236,014,555 - 36,042,478 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1236,014,557 - 36,042,500 (-)Ensemblmm10GRCm38
MGSCv371236,741,142 - 36,769,065 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361236,524,821 - 36,552,744 (-)NCBIMGSCv36mm8
Celera1237,468,545 - 37,496,455 (-)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1216.25NCBI
Tspan13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541019,973,227 - 19,979,923 (+)Ensembl
ChiLan1.0NW_00495541019,971,216 - 19,979,923 (+)NCBIChiLan1.0ChiLan1.0
TSPAN13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2621,588,694 - 21,619,390 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1769,913,417 - 69,944,113 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0717,410,398 - 17,441,224 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1716,736,690 - 16,767,281 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl716,736,690 - 16,767,282 (+)EnsemblpanPan2panpan1.1
TSPAN13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11431,261,223 - 31,292,695 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1431,261,240 - 31,291,679 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1430,782,434 - 30,813,983 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01431,181,409 - 31,213,199 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1431,181,373 - 31,213,195 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11431,283,834 - 31,315,359 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01430,995,467 - 31,027,211 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01431,308,954 - 31,340,534 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tspan13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511875,606,862 - 75,636,584 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365463,281,346 - 3,312,495 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365463,281,907 - 3,311,673 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSPAN13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl985,996,641 - 86,033,349 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1985,996,381 - 86,033,358 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2994,864,120 - 94,873,878 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSPAN13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12141,330,898 - 41,362,350 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604263,147,976 - 63,179,333 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tspan13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473913,445,697 - 13,482,063 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473913,445,541 - 13,479,067 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Tspan13
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1749,274,906 - 49,302,180 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tspan13
210 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:226
Count of miRNA genes:156
Interacting mature miRNAs:194
Transcripts:ENSRNOT00000006752
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63902865963457441Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat

Markers in Region
RH133746  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23140,885,825 - 140,885,857 (-)MAPPERmRatBN7.2
mRatBN7.2652,739,007 - 52,739,209 (+)MAPPERmRatBN7.2
mRatBN7.25139,407,025 - 139,407,063 (+)MAPPERmRatBN7.2
mRatBN7.23116,056,135 - 116,056,171 (+)MAPPERmRatBN7.2
mRatBN7.21632,615,715 - 32,615,756 (+)MAPPERmRatBN7.2
mRatBN7.26129,902,439 - 129,902,478 (-)MAPPERmRatBN7.2
mRatBN7.21478,045,605 - 78,045,645 (-)MAPPERmRatBN7.2
mRatBN7.2369,980,159 - 69,980,191 (-)MAPPERmRatBN7.2
mRatBN7.2769,181,743 - 69,181,775 (+)MAPPERmRatBN7.2
mRatBN7.2370,259,292 - 70,259,332 (-)MAPPERmRatBN7.2
mRatBN7.2672,306,333 - 72,306,370 (-)MAPPERmRatBN7.2
Rnor_6.0655,497,919 - 55,498,123NCBIRnor6.0
Rnor_5.0665,112,206 - 65,112,410UniSTSRnor5.0
RGSC_v3.4654,726,819 - 54,727,020UniSTSRGSC3.4
Celera651,885,577 - 51,885,778UniSTS
RH 3.4 Map6363.4UniSTS
Cytogenetic Map6q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
22 13 84 217 91 90 59 159 59 6 487 286 22 195 112 121 31 34 34

Sequence


Ensembl Acc Id: ENSRNOT00000006752   ⟹   ENSRNOP00000006752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl658,465,684 - 58,492,819 (-)Ensembl
mRatBN7.2 Ensembl652,738,758 - 52,765,547 (-)Ensembl
Rnor_6.0 Ensembl655,497,658 - 55,524,436 (-)Ensembl
RefSeq Acc Id: NM_001013244   ⟹   NP_001013262
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8658,466,051 - 58,492,804 (-)NCBI
mRatBN7.2652,738,748 - 52,765,503 (-)NCBI
Rnor_6.0655,497,659 - 55,524,415 (-)NCBI
Rnor_5.0665,111,946 - 65,138,702 (-)NCBI
RGSC_v3.4654,726,558 - 54,753,312 (-)RGD
Celera651,885,317 - 51,912,070 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001013262 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH89906 (Get FASTA)   NCBI Sequence Viewer  
  EDM03312 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000006752
  ENSRNOP00000006752.3
GenBank Protein Q5FVL6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001013262   ⟸   NM_001013244
- UniProtKB: Q5FVL6 (UniProtKB/Swiss-Prot),   A6HBA6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006752   ⟸   ENSRNOT00000006752

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5FVL6-F1-model_v2 AlphaFold Q5FVL6 1-204 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694559
Promoter ID:EPDNEW_R5084
Type:multiple initiation site
Name:Tspan13_1
Description:tetraspanin 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0655,524,428 - 55,524,488EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311788 AgrOrtholog
BioCyc Gene G2FUF-37803 BioCyc
Ensembl Genes ENSRNOG00000005046 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000006752 ENTREZGENE
  ENSRNOT00000006752.6 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7123552 IMAGE-MGC_LOAD
InterPro Tetraspanin UniProtKB/Swiss-Prot
  Tetraspanin/Peripherin UniProtKB/Swiss-Prot
  Tetraspanin_EC2_sf UniProtKB/Swiss-Prot
KEGG Report rno:366602 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109170 IMAGE-MGC_LOAD
NCBI Gene 366602 ENTREZGENE
PANTHER PTHR19282 UniProtKB/Swiss-Prot
  TETRASPANIN-13 UniProtKB/Swiss-Prot
Pfam Tetraspanin UniProtKB/Swiss-Prot
PhenoGen Tspan13 PhenoGen
PIRSF Tetraspanin UniProtKB/Swiss-Prot
PRINTS TMFOUR UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000005046 RatGTEx
Superfamily-SCOP SSF48652 UniProtKB/Swiss-Prot
UniProt A6HBA6 ENTREZGENE, UniProtKB/TrEMBL
  Q5FVL6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Tspan13  tetraspanin 13  Tm4sf13  transmembrane 4 superfamily member 13  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Tm4sf13  transmembrane 4 superfamily member 13  Tm4sf13_predicted  transmembrane 4 superfamily member 13 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Tm4sf13_predicted  transmembrane 4 superfamily member 13 (predicted)      Symbol and Name status set to approved 70820 APPROVED