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Gene: Usp6nl (USP6 N-terminal like) Rattus norvegicus

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Symbol:

Usp6nl

Name:

USP6 N-terminal like

RGD ID:

1311786

Description:

Predicted to enable GTPase activator activity and small GTPase binding activity. Predicted to be involved in Golgi organization and plasma membrane to endosome transport. Predicted to act upstream of or within regulation of Golgi organization and retrograde transport, plasma membrane to Golgi. Predicted to be located in plasma membrane. Predicted to be active in cytoplasmic vesicle and cytosol. Orthologous to human USP6NL (USP6 N-terminal like); PARTICIPATES IN platelet-derived growth factor signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; atrazine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC291309; USP6 N-terminal-like protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	USP6NL (USP6 N-terminal like)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Usp6nl (USP6 N-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Usp6nl (USP6 N-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	USP6NL (USP6 N-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	USP6NL (USP6 N-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Usp6nl (USP6 N-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	USP6NL (USP6 N-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	USP6NL (USP6 N-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Usp6nl (USP6 N-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Usp6nl (USP6 N-terminal like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	USP6NL (USP6 N-terminal like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	USP6NL (USP6 N-terminal like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Usp6nl (USP6 N-terminal like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	usp6nl (USP6 N-terminal like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RN-tre	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RN-tre	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tbc-17	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tbc-17	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	usp6nl	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	76,737,870 - 76,865,953 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	76,739,906 - 76,865,373 (-)	Ensembl				GRCr8
mRatBN7.2	17	71,828,433 - 71,956,878 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	71,830,469 - 71,956,027 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	75,331,332 - 75,459,049 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	79,152,755 - 79,280,482 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	73,203,033 - 73,330,762 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	75,759,428 - 75,887,108 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	75,761,469 - 75,886,523 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	77,415,385 - 77,542,080 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	83,131,513 - 83,256,483 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	71,290,276 - 71,414,326 (-)	NCBI		Celera
RGSC_v3.1	17	83,144,914 - 83,197,580 (-)	NCBI
Cytogenetic Map	17	q12.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

melanoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcitriol (ISO)

chlorpyrifos (ISO)

cyclosporin A (ISO)

deguelin (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

fenvalerate (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

lead diacetate (ISO)

leflunomide (ISO)

methoxychlor (EXP)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

potassium chromate (ISO)

propiconazole (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP,ISO)

topotecan (EXP)

troglitazone (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Golgi organization (IEA,ISO)

plasma membrane to endosome transport (IBA,IEA,ISO)

positive regulation of GTPase activity (ISO)

regulation of cilium assembly (ISO)

regulation of Golgi organization (IEA,ISO)

retrograde transport, plasma membrane to Golgi (IEA,ISO)

virion assembly (IEA)

Cellular Component

cytoplasmic vesicle (IBA,IEA,ISO)

cytosol (IEA,ISO)

Golgi apparatus (IEA)

plasma membrane (IEA,ISO)

Molecular Function

GTPase activator activity (IBA,IEA,ISO)

protein binding (ISO)

small GTPase binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

platelet-derived growth factor signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:17562788	PMID:17646400	PMID:17684057	PMID:21680502	PMID:25931508

Genomics

Comparative Map Data

Usp6nl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	76,737,870 - 76,865,953 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	76,739,906 - 76,865,373 (-)	Ensembl				GRCr8
mRatBN7.2	17	71,828,433 - 71,956,878 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	71,830,469 - 71,956,027 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	75,331,332 - 75,459,049 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	79,152,755 - 79,280,482 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	73,203,033 - 73,330,762 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	75,759,428 - 75,887,108 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	75,761,469 - 75,886,523 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	77,415,385 - 77,542,080 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	83,131,513 - 83,256,483 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	71,290,276 - 71,414,326 (-)	NCBI		Celera
RGSC_v3.1	17	83,144,914 - 83,197,580 (-)	NCBI
Cytogenetic Map	17	q12.3	NCBI

USP6NL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	11,460,510 - 11,611,650 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	11,460,328 - 11,611,803 (-)	Ensembl			hg38	GRCh38
GRCh37	10	11,502,509 - 11,653,649 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	11,542,515 - 11,614,280 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	10	11,431,129 - 11,582,310 (-)	NCBI		Celera
Cytogenetic Map	10	p14	NCBI
HuRef	10	11,421,155 - 11,572,059 (-)	NCBI		HuRef
CHM1_1	10	11,502,284 - 11,653,633 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	11,471,921 - 11,623,090 (-)	NCBI		T2T-CHM13v2.0

Usp6nl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	6,327,444 - 6,453,107 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	6,327,478 - 6,451,201 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	6,322,757 - 6,448,296 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	6,322,667 - 6,446,390 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	6,243,803 - 6,364,866 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	6,270,005 - 6,360,769 (+)	NCBI		MGSCv36	mm8
Celera	2	6,262,850 - 6,384,095 (+)	NCBI		Celera
Cytogenetic Map	2	A1	NCBI
cM Map	2	3.63	NCBI

Usp6nl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	27,471,483 - 27,593,775 (-)	Ensembl
ChiLan1.0	NW_004955421	27,469,652 - 27,593,771 (-)	NCBI	ChiLan1.0	ChiLan1.0

USP6NL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	23,983,055 - 24,123,293 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	23,988,387 - 24,128,625 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	11,470,413 - 11,542,608 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	11,453,137 - 11,595,083 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	11,453,137 - 11,590,863 (-)	Ensembl			panPan2	panpan1.1

USP6NL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	24,724,454 - 24,894,052 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	24,743,120 - 24,891,668 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	21,754,223 - 21,923,313 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	25,095,553 - 25,264,511 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	25,114,276 - 25,262,514 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	22,221,258 - 22,389,999 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	23,064,607 - 23,233,746 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	23,779,642 - 23,949,141 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Usp6nl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	27,470,845 - 27,641,483 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	3,635,960 - 3,800,934 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	3,635,966 - 3,802,906 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USP6NL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	60,241,016 - 60,391,642 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	60,193,505 - 60,398,399 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	66,118,747 - 66,197,460 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

USP6NL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	11,516,243 - 11,670,302 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	11,514,090 - 11,670,301 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666051	17,011,282 - 17,167,545 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Usp6nl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	6,670,563 - 6,811,235 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624775	6,662,824 - 6,876,708 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Usp6nl
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	12,684,218 - 12,781,385 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Usp6nl
721 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	523
Count of miRNA genes:	270
Interacting mature miRNAs:	345
Transcripts:	ENSRNOT00000046266
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
2301412	Kidm40	Kidney mass QTL 40		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	42388164	87388164	Rat
631502	Cm26	Cardiac mass QTL 26	3.71		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	70613502	86062352	Rat
1354588	Bvd4	Brain ventricular dilatation QTL 4	5.31	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	58194064	87388164	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	33104645	78104645	Rat
1354654	Spl7	Serum phospholipid level QTL 7	5.5		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	17	38031354	83031354	Rat
2317038	Ginf3	Gastrointestinal inflammation QTL 3	2.89	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	17	54829503	93515804	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40968017	89341781	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27233445	83975845	Rat
1354629	Scl31	Serum cholesterol level QTL 31	4.1		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	17	38031354	83031354	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24390595	84432719	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	38031354	83031354	Rat
61466	Niddm12	Non-insulin dependent diabetes mellitus QTL 12	3.2	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	65154872	93515804	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	38031354	83031354	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	33104645	78104645	Rat
12904736	Cm121	Cardiac mass QTL 121		0.043	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	42388164	87388164	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	17	46050126	91050126	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	0.0001	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	55604597	93006569	Rat
2324621	Coatc5	Coat color QTL 5			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	17	42654895	87654895	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	37687877	82687877	Rat
1300131	Bp193	Blood pressure QTL 193	3.3		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	68550040	93515804	Rat
7488963	Bp369	Blood pressure QTL 369		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	63697147	82818564	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	41062352	86062352	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	32199534	86201342	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			24136127	84432719	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	36045537	81045537	Rat
2302365	Gluco40	Glucose level QTL 40	4.79		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	64569820	86954580	Rat

Markers in Region

D11Mit209

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	17	76,809,265 - 76,809,379 (+)	Marker Load Pipeline
mRatBN7.2	17	71,899,823 - 71,899,938 (+)	MAPPER	mRatBN7.2
mRatBN7.2	3	114,502,185 - 114,502,286 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	75,830,171 - 75,830,285	NCBI	Rnor6.0
Rnor_6.0	3	119,713,666 - 119,713,764	NCBI	Rnor6.0
Rnor_5.0	3	126,239,037 - 126,239,135	UniSTS	Rnor5.0
Rnor_5.0	17	77,485,698 - 77,485,812	UniSTS	Rnor5.0
RGSC_v3.4	17	83,200,045 - 83,200,159	UniSTS	RGSC3.4
RGSC_v3.4	3	114,783,212 - 114,783,310	UniSTS	RGSC3.4
Celera	17	71,359,238 - 71,359,352	UniSTS
Cytogenetic Map	3	q36	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

BF415683

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	71,957,630 - 71,957,779 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	75,888,224 - 75,888,372	NCBI	Rnor6.0
Rnor_5.0	17	77,543,268 - 77,543,416	UniSTS	Rnor5.0
RGSC_v3.4	17	83,258,184 - 83,258,332	UniSTS	RGSC3.4
Celera	17	71,416,027 - 71,416,175	UniSTS
RH 3.4 Map	17	712.1	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

RH130379

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	71,831,642 - 71,831,857 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	75,762,645 - 75,762,859	NCBI	Rnor6.0
Rnor_5.0	17	77,418,602 - 77,418,816	UniSTS	Rnor5.0
RGSC_v3.4	17	83,132,689 - 83,132,903	UniSTS	RGSC3.4
Celera	17	71,291,452 - 71,291,666	UniSTS
Cytogenetic Map	17	q12.3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC088291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000046266 ⟹ ENSRNOP00000046740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	76,739,906 - 76,865,373 (-)	Ensembl
mRatBN7.2 Ensembl	17	71,830,469 - 71,955,930 (-)	Ensembl
Rnor_6.0 Ensembl	17	75,761,469 - 75,886,523 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103406 ⟹ ENSRNOP00000096234

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	76,739,906 - 76,795,658 (-)	Ensembl
mRatBN7.2 Ensembl	17	71,830,469 - 71,889,565 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105956 ⟹ ENSRNOP00000085611

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	76,739,906 - 76,802,615 (-)	Ensembl
mRatBN7.2 Ensembl	17	71,830,469 - 71,893,025 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112117 ⟹ ENSRNOP00000093675

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	76,739,906 - 76,837,034 (-)	Ensembl
mRatBN7.2 Ensembl	17	71,830,469 - 71,927,392 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118410 ⟹ ENSRNOP00000088429

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	71,830,469 - 71,956,027 (-)	Ensembl

RefSeq Acc Id:

NM_001106120 ⟹ NP_001099590

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	76,739,906 - 76,865,373 (-)	NCBI
mRatBN7.2	17	71,830,469 - 71,955,930 (-)	NCBI
Rnor_6.0	17	75,761,469 - 75,886,523 (-)	NCBI
Rnor_5.0	17	77,415,385 - 77,542,080 (-)	NCBI
RGSC_v3.4	17	83,131,513 - 83,256,483 (-)	RGD
Celera	17	71,290,276 - 71,414,326 (-)	RGD

Sequence:

show sequence

CGGGAGCCTCCTGGAAGGGAAACAATGGGGCGGAGGGCACTGCGGTAGCCGCCGCCGCCGCCGC
CGCCGCCGCGCCGGACCCTGTCGGCCTCCCGCGACTGGCCGCCGTCGCCGCTGCTGGGACCGTT
TGGAGAACAGGATATGCATTCCTCTGAGAAGCCCTGGACAGCAGAGTCTGGTTTGGTGCTGGGT
CGGGACAGCGCACCGAGACTTTTGCAGTCATGAATTCGGACCAGGATGTAGCGCTCAAACTCGC
TCAGGAACGAGCTGAAATAGTTGCTAAATATGACAGAGGACGGGAAGGTGCAGAGATCGAGCCC
TGGGAAGATGCTGATTATCTTGTTTACAAAGTCACCGATAGATTTGGCTTTTTACATGAGGAGG
AGCTCCCGTATCCTAACGCAGCCGCGGACCGGCAAAAGCAACTGGAAATCGAAAGGACTTCCAA
GTGGCTGAAAATGCTGAAGAGATGGGAGAGATACAAGAACACTGAGAAGTTCCATCGACGAATT
TACAAAGGAATTCCACTCCAGCTCCGAGGTGAAGTCTGGGCCCTTCTTCTTGAGATCCCTAAAA
TGAAAGAAGAAACAAGAGACCTCTATAGTAAATTAAAGCACAGAGCACGGGGTTGTTCGCCTGA
TATCAGACAAATAGACCTTGACGTGAACCGCACATTCAGGGACCATATCATGTTTAGAGACAGA
TATGGTGTCAAGCAGCAATCCTTGTTCCACGTTCTTGCTGCCTACTCCATCTACAATACGGAGG
TCGGGTACTGTCAAGGGATGAGTCAGATCACAGCTCTGCTCCTGATGTACATGAATGAGGAGGA
CGCCTTCTGGGCCCTGGTCAAGCTCTTCTCAGGCCCCAAGCACGCCATGCATGGTTTTTTTGTC
CAAGGTTTCCCTAAACTCTTGAGATTTCAAGAACATCATGAGAAAATTCTGAACAAATTTTTGT
CCAAACTAAAGCAGCACTTGGATTCTCAAGAAATCTATACAAGTTTTTACACAATGAAGTGGTT
TTTTCAGTGTTTCCTTGACCGAACTCCCTTCAGGCTGAACCTCCGGATCTGGGACATCTACATC
TTTGAGGGAGAGCGAATTCTCACTGCTATGTCTTATACAATCTTGAAGCTACACAGAAAGCATC
TAATGAAGTTGTCTATGGAAGAACTTGTAGAATTTCTTCAGGAGACTCTCGCCAAGGACTTTTT
CTTCGAGGATGATTTCGTAATAGAGCAACTGCAGGTCTCTATGACAGAGTTAAAGCGGGCCAAG
TTAGATCTCCCAGAACCTGGTAAGGAGGATGAATACCCAAGGAAACCCCTGGGGCAGCTCCCAC
CTGAGTATACCAATCACTTGAGCAATGGACAAAGAAGTGTTGGCAGGCCCAGCCCCAAAATAAG
CAGCAGGAGAGAAGATGGGTCGCCTCACAAGGCACATGAGCACTCTCCTGCCCATCACAGCAGA
AATGGCACCCCAGAAAGAGTCGGGCAGTCAAGACGCAAGTCTGTGGATGAGGGTAGTAAAAATC
TGAAGCAGGAGGCAGATTTTCAGAGAAAACCTTCATCGGGCACACAGGACAACTCCAAGCATTA
TAACCATGCAACTGCTAACCAAAATAGCAATGCACTTTCCAACATCAGGAAGGAGTTCGTGCCC
AAATGGAGGAAGCCATCGGAGGCCTCAGCTATCGAAAGAACTGCTAAATACGCCATTGAAGGCA
GAAGTCACTCAGTGTTTCCCGCTCTCTCTGTCGCAGTCCCAAGTTCTGCTGAGACCCGATTGTC
AAACTCAAGGCAAAAGATGAAGGCTTTTGATGGTGGTGAGGGGAACCGGGGTTCTAATGCTTCC
CAGTATGACAACGTACCTGGGAGTGAGAGCGAGCCTGGAGCGTCTGCAGAGGAGGGACCGGAGC
GGACTCACCCTCACAGTCCAAGGAAGCACTCTGAGCCAAGTCCCAGTCCATCAAAAGTACCCAA
CAAGTTTACCTTTAAAGTGCAGCCTCCCAGCCATGTACGATACCCATCCCAGCCAGCAGGGGAG
GATCACAGAGCTGCATATCCACCCTCCTACAGCAACCCGCCTGTCTACCATGGAAATTCTCCAA
AACACATCCCTACGGCCCACAGTGGCTTTGCGTCCACACAGATCAGCCTGGGGCCTCAAGTGAA
CCCTTCCAGGAGACCTTACGGTTCCTCTCTTTCAGGTGACACTTCTCCAGAGAAGTCCTACGGC
CGCCTAACTCCTGTTCTTCCCTCTAGTCGAATTGAAGTCCTTCCCATAGACATTGGTGCCAGGG
GATACGGCAGTTCAGGGTCACCAAAGAGCGGAAAGTTCATCCTTCCCCCGGTGGACTATTTGCC
TGAGAACAGAAAATGGTCAGAATTTAGTTACACATACAGACCTGAGGTGCATGGTCAGTCATGG
ACTCAGGATGCTACCCGTAGCCACTTAAGCAATTTACCAAAATACACAGCCTTTCCGCACATAC
CTCTTCAGGACCACGGCCTTCCAGAAGTGTCTGTAGACAGTCCAGTGAGGTATAAGACTTCACC
AGCTGTGGAAGAGGCCAGTCCTCCTGGGTATCCATACGCAGGGCCCACACCTTCAGCACATCAC
TACAGAAATCGAGAGGGCCTGTCTGTTCAGGAATCAGTGTTGCTATGAGAATTTTCTGTATTCA
CTGACAACAGGGGAATAGAAACCATATGATGCCCGTGTTTATAATTGCCAAAGCAGTATTGTTT
ATATTGTAAACAACTTGTGCAGCTCAGTGTGTGTCAGTAAGGAGAGTGTGGGGTGCTTCCCTCC
GTGTAGAGGCCACTGAAGAAGAGCGATTCGTTTGCGTCCTGGCTGAACGTCTGAGAGTGACCTG
GAAACACGGCCAGGTTCTCTATGCTCTTCCCTTTGTGTCTCCCCCTCACTCCCGGTCTGTTCTG
ACTACTGTCAGAAAGCACTGAGACACTGTAGAACACATCCTCTGAGGGCTGTCCCTCGACTCTG
ACTAGATGAGGCAAACACCTGTGCACATAGATTTTGTTTTTTAAAAAACCACCTTTAATCTAGA
TCCATGGAATAACTGTTTTTTTTTTTTTACCCCTTATCTTTTGGCCCACCCCACCTGGACATAT
TTTAACCTATGTTCTAAACTAAAACTAACTAAAGTTTATCCGACTTTATGAATCCAGCGCCTTT
CAGAATGTCATTCTCCTTCAGGTGCTGCCATTTTCTCAGCTCCTGAAAGTTAAAGGCTGTGGAG
AAAGGCTCACCACTCGATGGTGCCTAAAGTGGTTCAGTTAGCCAGAGTGAGCGGCTGCACAGCG
TTCACTGTGTCCCCTAAACTCCAAGTGTCTCGGTGCTGCCATGCCCTGGGCTCTGGACCGGCTG
CAGAGGGACCTGGAAGTCAGACCTTGCAGTGCCGTAGGCGGTGGGCAGTTCCTTGTCACAGTAA
AGCAAGGCTGCATCTCCCTCACAGGCCCAGGGCACCGTCCGTCCGTCCATCCGCACGGCTTTGT
CACCCAGGCTGCACAGAGTGTAGTAGGTGGATGGGTGCTGCAGCACTCACTGGGCCATTACATC
GCCCTGATCAAAACTGTGAAATGCCCTAATGACTGATAAGAATCTAGAGTTTTGATCTTTGTAA
AAAAGAAAAAAAAGTAGTTTGTTTCATAGTTTTGGAAATTTCTTTCAATGAAAAATAATCGAAG
TTCATGTTTTTAAAAAGGCAATGATTCCTTTATGCTGTCACACACTACTGTCACCAAGACACTG
ACAAAGAGCGGGTTCTCCAAGAACCATGGCTGTGTCTCCGTAGATGCTCGCCCACCATTACCCT
CTTGTACTCTTGTAGGAAGGCCAACAGTGACGCTCCCCCGCCCCACAGCGGGACTTAGGCTTTT
GAGGTACAAGAATATGTCTTCATGAAAGTAACATTGTTTATCTATCAAACGTGACAATATTTTG
ATGTATATAATGATTCTAATGTAATTTAATTAACGGAATGATGTTTTTAAGTGTGGAAGCAAAT
GCAGTATATTAAAAGTGGACACCACACCGACACCCCCTACTCCTGACCAAATAACCAGGCTCTT
GATTTAGATCATGTGGAAGGTGAGAAATAAATGTATGTAGACATGTAGTTGAGGATCTTACGGT
TCTTAGAGTATGACTCTGGGACTCGTAAGGAGCAAGCTGTACAATGTAGTTCATGAGGGCAGCA
TCTGTGCCTCTTCAGAAAGTACATATCTAGTGGTAAATAATGTAGATTATATATATATATATAT
ATATATATATGCAGTATATATGGACACACTATTTTCTTATGTCATCTATGGCCTTTTTTTATCT
GTGTACTTTTTGATGTGATTGTTTTTAACACGCTAAGAGTAATCCGTGTACTTTGTTCTGCGTC
TTCTGTGCAGCTTCCCAGTGGCAGGTGCTGCACCCCGGGGCTGGCCGGGCCCGCAGATGTGCCA
CCAGCAGATCTTACACACGCTCAGCTCTCTGCTTGCATTCCAGTGAGACCGTGTTTAGAACCAC
GTCGCCTTTCCTTGGCTTAAGCGTTTCTAATGGCAGCAAAGTCTTCCCCTCCATAAGATGTACC
TCTGTTGGCTTTCAGTAGGAGATTTTAATTTAAAATTATTTTGCCACTATACAATTTTATTTTA
AATTTATTTTTAAATAAAAGAAATGATAAGAGAAATAACACTGACAAAGTGATTCAAAATATAT
TTATAGAAAACGTTTGCTGAGGGCATTCCAGGCAGAGCAGCCAGTCAGGTTCCATAACTGCACG
CCCACAGTGTGCTTGCCCTGGCTGCGTCTCCCCTCATGGTATCTTGGCCCACTTTTGTCAAAAG
TAAACATTTGGGTGTGGTATCGTAAGTTTCTTCAGAAGGAGTCTTGCTGGTCTTTACGTAACTA
GTGAACTTAAGGTTGTTTGGGGTTTTGTTTTTGTTTTTGTTTTGGTGTGTGATTGGTTGGTTTG
CTTGTTTGTTTGTTTGCTTTGCTTTGCTTTTAATTCTCAAGTCTCGCCCTTATACCACCTAAAT
CTTATCTTGGGTAAAACACAAGGAGGCATATTCCCCGTGTCTAATGCTGTCCTCTTGAGACTCT
TTCTAACAAAGATGCCCCAAGTTGTCTTATGTTCCTGTTGTGGGATGTTTACAAACGGTTTGTT
GTTATTTTGGTTTCTGAAGATGGAGTCTTGCATATGTCCTGCCTGATCTTACCGTGT

hide sequence

RefSeq Acc Id:

XM_006254232 ⟹ XP_006254294

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	76,737,870 - 76,802,802 (-)	NCBI
mRatBN7.2	17	71,828,433 - 71,893,424 (-)	NCBI
Rnor_6.0	17	75,759,428 - 75,823,745 (-)	NCBI
Rnor_5.0	17	77,415,385 - 77,542,080 (-)	NCBI

Sequence:

show sequence

TCTGTGTGTGCGTGTGTGTGCATGTGTTCCATGACAACTCTTACTGAAAGTCCTAGGAATGTGG
CTAATTTACCATGTAAGAGTGGCTTGTGAGTTGCTTGTGTAAGGCCCTGTTTGGCGTGAGATGG
AATGTCGGGTGTAGGCTGCTGTGGCTCCTAGTTGGGATTCAGCCTGAAAGGCGTGTTTTTCTCT
CAACAAACATCATCTTTGTTTGAGTATCCATAGTCCAAGTAACCACAGTGAGGCTTTCTTCCAT
TTGGAGAAGGCAAGACTGCTTCTCAAGCTTCTGTCTAGTGCTTGTTTCACAGTTGAGTAAGGCC
GCACCACCTTTTGTTTCTGGCAGCAGCAGAGTGTATGAGGCACCACCTGACTCTAACGTAGTAA
TGAGACCGTGGAGTAGATCAGGGTTCTATGAGGACTGAGACGGCCATCATCTCTCAGGACCAGC
CTGTTTGTCTAACCAAGGATTCGGACCAGGATGTAGCGCTCAAACTCGCTCAGGAACGAGCTGA
AATAGTTGCTAAATATGACAGAGGACGGGAAGGTGCAGAGATCGAGCCCTGGGAAGATGCTGAT
TATCTTGTTTACAAAGTCACCGATAGATTTGGCTTTTTACATGAGGAGGAGCTCCCGTATCCTA
ACGCAGCCGCGGACCGGCAAAAGCAACTGGAAATCGAAAGGACTTCCAAGTGGCTGAAAATGCT
GAAGAGATGGGAGAGATACAAGAACACTGAGAAGTTCCATCGACGAATTTACAAAGGAATTCCA
CTCCAGCTCCGAGGTGAAGTCTGGGCCCTTCTTCTTGAGATCCCTAAAATGAAAGAAGAAACAA
GAGACCTCTATAGTAAATTAAAGCACAGAGCACGGGGTTGTTCGCCTGATATCAGACAAATAGA
CCTTGACGTGAACCGCACATTCAGGGACCATATCATGTTTAGAGACAGATATGGTGTCAAGCAG
CAATCCTTGTTCCACGTTCTTGCTGCCTACTCCATCTACAATACGGAGGTCGGGTACTGTCAAG
GGATGAGTCAGATCACAGCTCTGCTCCTGATGTACATGAATGAGGAGGACGCCTTCTGGGCCCT
GGTCAAGCTCTTCTCAGGCCCCAAGCACGCCATGCATGGTTTTTTTGTCCAAGGTTTCCCTAAA
CTCTTGAGATTTCAAGAACATCATGAGAAAATTCTGAACAAATTTTTGTCCAAACTAAAGCAGC
ACTTGGATTCTCAAGAAATCTATACAAGTTTTTACACAATGAAGTGGTTTTTTCAGTGTTTCCT
TGACCGAACTCCCTTCAGGCTGAACCTCCGGATCTGGGACATCTACATCTTTGAGGGAGAGCGA
ATTCTCACTGCTATGTCTTATACAATCTTGAAGCTACACAGAAAGCATCTAATGAAGTTGTCTA
TGGAAGAACTTGTAGAATTTCTTCAGGAGACTCTCGCCAAGGACTTTTTCTTCGAGGATGATTT
CGTAATAGAGCAACTGCAGGTCTCTATGACAGAGTTAAAGCGGGCCAAGTTAGATCTCCCAGAA
CCTGGTAAGGAGGATGAATACCCAAGGAAACCCCTGGGGCAGCTCCCACCTGAGTATACCAATC
ACTTGAGCAATGGACAAAGAAGTGTTGGCAGGCCCAGCCCCAAAATAAGCAGCAGGAGAGAAGA
TGGGTCGCCTCACAAGGCACATGAGCACTCTCCTGCCCATCACAGCAGAAATGGCACCCCAGAA
AGAGTCGGGCAGTCAAGACGCAAGTCTGTGGATGAGGGTAGTAAAAATCTGAAGCAGGAGGCAG
ATTTTCAGAGAAAACCTTCATCGGGCACACAGGACAACTCCAAGCATTATAACCATGCAACTGC
TAACCAAAATAGCAATGCACTTTCCAACATCAGGAAGGAGTTCGTGCCCAAATGGAGGAAGCCA
TCGGAGGCCTCAGCTATCGAAAGAACTGCTAAATACGCCATTGAAGGCAGAAGTCACTCAGTGT
TTCCCGCTCTCTCTGTCGCAGTCCCAAGTTCTGCTGAGACCCGATTGTCAAACTCAAGGCAAAA
GATGAAGGCTTTTGATGGTGGTGAGGGGAACCGGGGTTCTAATGCTTCCCAGTATGACAACGTA
CCTGGGAGTGAGAGCGAGCCTGGAGCGTCTGCAGAGGAGGGACCGGAGCGGACTCACCCTCACA
GTCCAAGGAAGCACTCTGAGCCAAGTCCCAGTCCATCAAAAGTACCCAACAAGTTTACCTTTAA
AGTGCAGCCTCCCAGCCATGTACGATACCCATCCCAGCCAGCAGGGGAGGATCACAGAGCTGCA
TATCCACCCTCCTACAGCAACCCGCCTGTCTACCATGGAAATTCTCCAAAACACATCCCTACGG
CCCACAGTGGCTTTGCGTCCACACAGATCAGCCTGGGGCCTCAAGTGAACCCTTCCAGGAGACC
TTACGGTTCCTCTCTTTCAGGTGACACTTCTCCAGAGAAGTCCTACGGCCGCCTAACTCCTGTT
CTTCCCTCTAGTCGAATTGAAGTCCTTCCCATAGACATTGGTGCCAGGGGATACGGCAGTTCAG
GGTCACCAAAGAGCGGAAAGTTCATCCTTCCCCCGGTGGACTATTTGCCTGAGAACAGAAAATG
GTCAGAATTTAGTTACACATACAGACCTGAGGTGCATGGTCAGTCATGGACTCAGGATGCTACC
CGTAGCCACTTAAGCAATTTACCAAAATACACAGCCTTTCCGCACATACCTCTTCAGGACCACG
GCCTTCCAGAAGTGTCTGTAGACAGTCCAGTGAGGTATAAGACTTCACCAGCTGTGGAAGAGGC
CAGTCCTCCTGGGTATCCATACGCAGGGCCCACACCTTCAGCACATCACTACAGAAATCGAGAG
GGCCTGTCTGTTCAGGAATCAGTGTTGCTATGAGAATTTTCTGTATTCACTGACAACAGGGGAA
TAGAAACCATATGATGCCCGTGTTTATAATTGCCAAAGCAGTATTGTTTATATTGTAAACAACT
TGTGCAGCTCAGTGTGTGTCAGTAAGGAGAGTGTGGGGTGCTTCCCTCCGTGTAGAGGCCACTG
AAGAAGAGCGATTCGTTTGCGTCCTGGCTGAACGTCTGAGAGTGACCTGGAAACACGGCCAGGT
TCTCTATGCTCTTCCCTTTGTGTCTCCCCCTCACTCCCGGTCTGTTCTGACTACTGTCAGAAAG
CACTGAGACACTGTAGAACACATCCTCTGAGGGCTGTCCCTCGACTCTGACTAGATGAGGCAAA
CACCTGTGCACATAGATTTTGTTTTTTAAAAAACCACCTTTAATCTAGATCCATGGAATAACTG
TTTTTTTTTTTTTACCCCTTATCTTTTGGCCCACCCCACCTGGACATATTTTAACCTATGTTCT
AAACTAAAACTAACTAAAGTTTATCCGACTTTATGAATCCAGCGCCTTTCAGAATGTCATTCTC
CTTCAGGTGCTGCCATTTTCTCAGCTCCTGAAAGTTAAAGGCTGTGGAGAAAGGCTCACCACTC
GATGGTGCCTAAAGTGGTTCAGTTAGCCAGAGTGAGCGGCTGCACAGCGTTCACTGTGTCCCCT
AAACTCCAAGTGTCTCGGTGCTGCCATGCCCTGGGCTCTGGACCGGCTGCAGAGGGACCTGGAA
GTCAGACCTTGCAGTGCCGTAGGCGGTGGGCAGTTCCTTGTCACAGTAAAGCAAGGCTGCATCT
CCCTCACAGGCCCAGGGCACCGTCCGTCCGTCCATCCGCACGGCTTTGTCACCCAGGCTGCACA
GAGTGTAGTAGGTGGATGGGTGCTGCAGCACTCACTGGGCCATTACATCGCCCTGATCAAAACT
GTGAAATGCCCTAATGACTGATAAGAATCTAGAGTTTTGATCTTTGTAAAAAAGAAAAAAAAGT
AGTTTGTTTCATAGTTTTGGAAATTTCTTTCAATGAAAAATAATCGAAGTTCATGTTTTTAAAA
AGGCAATGATTCCTTTATGCTGTCACACACTACTGTCACCAAGACACTGACAAAGAGCGGGTTC
TCCAAGAACCATGGCTGTGTCTCCGTAGATGCTCGCCCACCATTACCCTCTTGTACTCTTGTAG
GAAGGCCAACAGTGACGCTCCCCCGCCCCACAGCGGGACTTAGGCTTTTGAGGTACAAGAATAT
GTCTTCATGAAAGTAACATTGTTTATCTATCAAACGTGACAATATTTTGATGTATATAATGATT
CTAATGTAATTTAATTAACGGAATGATGTTTTTAAGTGTGGAAGCAAATGCAGTATATTAAAAG
TGGACACCACACCGACACCCCCTACTCCTGACCAAATAACCAGGCTCTTGATTTAGATCATGTG
GAAGGTGAGAAATAAATGTATGTAGACATGTAGTTGAGGATCTTACGGTTCTTAGAGTATGACT
CTGGGACTCGTAAGGAGCAAGCTGTACAATGTAGTTCATGAGGGCAGCATCTGTGCCTCTTCAG
AAAGTACATATCTAGTGGTAAATAATGTAGATTATATATATATATATATATATATATATGCAGT
ATATATGGACACACTATTTTCTTATGTCATCTATGGCCTTTTTTTATCTGTGTACTTTTTGATG
TGATTGTTTTTAACACGCTAAGAGTAATCCGTGTACTTTGTTCTGCGTCTTCTGTGCAGCTTCC
CAGTGGCAGGTGCTGCACCCCGGGGCTGGCCGGGCCCGCAGATGTGCCACCAGCAGATCTTACA
CACGCTCAGCTCTCTGCTTGCATTCCAGTGAGACCGTGTTTAGAACCACGTCGCCTTTCCTTGG
CTTAAGCGTTTCTAATGGCAGCAAAGTCTTCCCCTCCATAAGATGTACCTCTGTTGGCTTTCAG
TAGGAGATTTTAATTTAAAATTATTTTGCCACTATACAATTTTATTTTAAATTTATTTTTAAAT
AAAAGAAATGATAAGAGAAATAACACTGACAAAGTGATTCAAAATATATTTATAGAAAACGTTT
GCTGAGGGCATTCCAGGCAGAGCAGCCAGTCAGGTTCCATAACTGCACGCCCACAGTGTGCTTG
CCCTGGCTGCGTCTCCCCTCATGGTATCTTGGCCCACTTTTGTCAAAAGTAAACATTTGGGTGT
GGTATCGTAAGTTTCTTCAGAAGGAGTCTTGCTGGTCTTTACGTAACTAGTGAACTTAAGGTTG
TTTGGGGTTTTGTTTTTGTTTTTGTTTTGGTGTGTGATTGGTTGGTTTGCTTGTTTGTTTGTTT
GCTTTGCTTTGCTTTTAATTCTCAAGTCTCGCCCTTATACCACCTAAATCTTATCTTGGGTAAA
ACACAAGGAGGCATATTCCCCGTGTCTAATGCTGTCCTCTTGAGACTCTTTCTAACAAAGATGC
CCCAAGTTGTCTTATGTTCCTGTTGTGGGATGTTTACAAACGGTTTGTTGTTATTTTGGTTTCT
GAAGATGGAGTCTTGCATATGTCCTGCCTGATCTTACCGTGTACACGAGTCTGACCCGGAAATT
GAGGTGCTCCTCCCTTAGCCTGCAGATGCACCTCCCATCTTGCTCAGCACAGGGTTTTCGTGGT
GTGGGTTTTGATTGTCTTTGTTTTCAGGGGTGGACATTGAACACGTCGTCTCAAACACTGCCTG
GGAACTAGTGTTTCAAATTCTGTGTAGGTCAGAAGTTTTGGAGCTCAAAAAAGTGGTATCAGGA
AAGTTAGGGAAAAGTCCTCTGGCAACAACGTTATCAGCTGTCCTCATGTCAAGATTTCTGCTAG
TCACAGCTAAGTAGCTTCGAGAAAGGAGGTGTGACCCTCTCACCCCCAGACGCTTACACACTCC
TGCAAAGTAGACAGAACCTGCAGATTGCCGATACCTGTCGGTGGTCTGCTCCTCAGCCCAGCTG
CTATCCAAGCCCTTTACAGTGAGAAGTCCCCGCCCTGCCTTCATTTGACCATCAGTACTGAGCA
GCTAGAACTCACAGGGACTGTGTCTCCACACTTGAGAACATGAGGGCTTTGATTTGAGTCCATG
GGTAATCCTGAACAGTTGCCATCCTGACGTCTTCCTGAATCTTCTCATGTGTGAGCATGGGATA
TGTCTGTTCAGGGCTGCAATTTCAGTGTTTTGTGGGTGGTCTGTTTCCTTACTAGGACTTCTTC
TCTGTTGCTGTTTTCTTCTCTGTCGTCAGGACTGTTTTCTACCCTCCTGGAGTCTTGAAACCTG
CTCTCCCATTGAAGGAGAGGAAGACTGGGGTTGGCTTACATTTCTAGGGTGTTGGGAGAGCTGG
AGAATTGGGGTCAACATCCCATCCAAAGACTTCATGAGTTAGTTTCAGTTTAGTGCCAAGGCAA
CTTCTTTTGGGACGTGTGGGGCTTGAGGATTGGGGGTTGACAGGGATCATAATCCGATAGACAC
TTTGTTATCCAGAGAGCATTGGTAATTTGCCATAAGTGACCCAAAGCCACCAGAGAGTGCATGT
CCCAGAGAAGAAGGCCAAGCAGAGCAGGCAGGCACCCACATGGCAGACTTACCCATGAGAGAGG
GCAGCAGTATTCTGTGCATGTTAGACGTGTGGGTTGGAGGCTGTCAGATCTGTTTGGTAGGCTG
AGTTTGCTGTCCAGTAGTTGTGTGACTTTGGGCAAGTCCCAGACTTCTTCTTGGCCTCGCTGAC
CTTAGCGAGAATGTGGGCATTTGAGAGGTACGGCAGAAGAGAAGGCAGTCATGATCTGATTGTG
TGAGTGATGGAGTTACCGGTGGTAGTGGTTTGAGTTTTGTGTCTGTGTCAGCTGCTGTTCTAAG
TCCTGGTAGAAACTGATGTGACAAACCCTTGTTTTCATGGATCTTCCGCCCTGACCCACTTACC
TCTAAACTGAAGGTGGGTTTTTTGGTTTTGTTTCTGGTGTTTGCTTTCTGACTGTTGGTCTTTC
GTATTTCCTAGGATCGAGCTGATTGGTCTGAAGTGTTTGGTTCAGTGTCATGCACTAATACGTG
TTGTTCTCTGTAACTACGTGTCACGGCACTAGGCTTTAGTGGGCCAGGAGGGGTTTGACCTTGT
TCTCACGAGACTGAGAGTCTGAAGAGCAGCCCAGGGGTAAAGGCAGTCAACTTGCATGTGATAC
AAGACAGGAAAAGCAGAGCCGGTGTGACTTGAGATGGCGCCAGCCCCTCACGTATTGTGGTTGG
GTGGGTGGTATAAAATGCAGCAGACCTGTGCTCGGATGTGGGGGTGGCAGAGTCTGTTTGTGTT
TGGCCAGGGGGAGATGCTTGCTGGCCTCCTGTCACCCAGAGCCACATTCAGGTCACATTGTGAG
CACAAACAGGAGGTGGCAAGCCCCTTGAAGGTTTGGGTGGGGTGGGAGTCGCTGTATGGAAGGA
CAAGGTGAGGCGGGGACACGGAGGAGAAGTCTGTGGGGAAGACAGTGCTGAGGGGAGGCTGCTT
TGCCTGCCGTGTTCTCCAGGCTCTCTCCAGGCTGCCCCTGGCTTCTGGTCTGGTGCCCTCTTGT
ACTCAGAAGTATTAAACACTGATCATGAAACCCTC

hide sequence

RefSeq Acc Id:

XM_006254233 ⟹ XP_006254295

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	76,737,870 - 76,865,953 (-)	NCBI
mRatBN7.2	17	71,828,433 - 71,956,878 (-)	NCBI
Rnor_6.0	17	75,759,428 - 75,887,108 (-)	NCBI
Rnor_5.0	17	77,415,385 - 77,542,080 (-)	NCBI

Sequence:

show sequence

CCACTCTATTGACAGACTCATTGTGCGCACACTAGCAAGCATTCGCTCGTGCAGGGGACAACTC
CACGAAGCAGAACAGGATATGCATTCCTCTGAGAAGCCCTGGACAGCAGAGTCTGGTTTGGTGC
TGGGTCGGGACAGCGCACCGAGACTTTTGCAGTCATGAATTCGGACCAGGATGTAGCGCTCAAA
CTCGCTCAGGAACGAGCTGAAATAGTTGCTAAATATGACAGAGGACGGGAAGGTGCAGAGATCG
AGCCCTGGGAAGATGCTGATTATCTTGTTTACAAAGTCACCGATAGATTTGGCTTTTTACATGA
GGAGGAGCTCCCGTATCCTAACGCAGCCGCGGACCGGCAAAAGCAACTGGAAATCGAAAGGACT
TCCAAGTGGCTGAAAATGCTGAAGAGATGGGAGAGATACAAGAACACTGAGAAGTTCCATCGAC
GAATTTACAAAGGAATTCCACTCCAGCTCCGAGGTGAAGTCTGGGCCCTTCTTCTTGAGATCCC
TAAAATGAAAGAAGAAACAAGAGACCTCTATAGTAAATTAAAGCACAGAGCACGGGGTTGTTCG
CCTGATATCAGACAAATAGACCTTGACGTGAACCGCACATTCAGGGACCATATCATGTTTAGAG
ACAGATATGGTGTCAAGCAGCAATCCTTGTTCCACGTTCTTGCTGCCTACTCCATCTACAATAC
GGAGGTCGGGTACTGTCAAGGGATGAGTCAGATCACAGCTCTGCTCCTGATGTACATGAATGAG
GAGGACGCCTTCTGGGCCCTGGTCAAGCTCTTCTCAGGCCCCAAGCACGCCATGCATGGTTTTT
TTGTCCAAGGTTTCCCTAAACTCTTGAGATTTCAAGAACATCATGAGAAAATTCTGAACAAATT
TTTGTCCAAACTAAAGCAGCACTTGGATTCTCAAGAAATCTATACAAGTTTTTACACAATGAAG
TGGTTTTTTCAGTGTTTCCTTGACCGAACTCCCTTCAGGCTGAACCTCCGGATCTGGGACATCT
ACATCTTTGAGGGAGAGCGAATTCTCACTGCTATGTCTTATACAATCTTGAAGCTACACAGAAA
GCATCTAATGAAGTTGTCTATGGAAGAACTTGTAGAATTTCTTCAGGAGACTCTCGCCAAGGAC
TTTTTCTTCGAGGATGATTTCGTAATAGAGCAACTGCAGGTCTCTATGACAGAGTTAAAGCGGG
CCAAGTTAGATCTCCCAGAACCTGGTAAGGAGGATGAATACCCAAGGAAACCCCTGGGGCAGCT
CCCACCTGAGTATACCAATCACTTGAGCAATGGACAAAGAAGTGTTGGCAGGCCCAGCCCCAAA
ATAAGCAGCAGGAGAGAAGATGGGTCGCCTCACAAGGCACATGAGCACTCTCCTGCCCATCACA
GCAGAAATGGCACCCCAGAAAGAGTCGGGCAGTCAAGACGCAAGTCTGTGGATGAGGGTAGTAA
AAATCTGAAGCAGGAGGCAGATTTTCAGAGAAAACCTTCATCGGGCACACAGGACAACTCCAAG
CATTATAACCATGCAACTGCTAACCAAAATAGCAATGCACTTTCCAACATCAGGAAGGAGTTCG
TGCCCAAATGGAGGAAGCCATCGGAGGCCTCAGCTATCGAAAGAACTGCTAAATACGCCATTGA
AGGCAGAAGTCACTCAGTGTTTCCCGCTCTCTCTGTCGCAGTCCCAAGTTCTGCTGAGACCCGA
TTGTCAAACTCAAGGCAAAAGATGAAGGCTTTTGATGGTGGTGAGGGGAACCGGGGTTCTAATG
CTTCCCAGTATGACAACGTACCTGGGAGTGAGAGCGAGCCTGGAGCGTCTGCAGAGGAGGGACC
GGAGCGGACTCACCCTCACAGTCCAAGGAAGCACTCTGAGCCAAGTCCCAGTCCATCAAAAGTA
CCCAACAAGTTTACCTTTAAAGTGCAGCCTCCCAGCCATGTACGATACCCATCCCAGCCAGCAG
GGGAGGATCACAGAGCTGCATATCCACCCTCCTACAGCAACCCGCCTGTCTACCATGGAAATTC
TCCAAAACACATCCCTACGGCCCACAGTGGCTTTGCGTCCACACAGATCAGCCTGGGGCCTCAA
GTGAACCCTTCCAGGAGACCTTACGGTTCCTCTCTTTCAGGTGACACTTCTCCAGAGAAGTCCT
ACGGCCGCCTAACTCCTGTTCTTCCCTCTAGTCGAATTGAAGTCCTTCCCATAGACATTGGTGC
CAGGGGATACGGCAGTTCAGGGTCACCAAAGAGCGGAAAGTTCATCCTTCCCCCGGTGGACTAT
TTGCCTGAGAACAGAAAATGGTCAGAATTTAGTTACACATACAGACCTGAGGTGCATGGTCAGT
CATGGACTCAGGATGCTACCCGTAGCCACTTAAGCAATTTACCAAAATACACAGCCTTTCCGCA
CATACCTCTTCAGGACCACGGCCTTCCAGAAGTGTCTGTAGACAGTCCAGTGAGGTATAAGACT
TCACCAGCTGTGGAAGAGGCCAGTCCTCCTGGGTATCCATACGCAGGGCCCACACCTTCAGCAC
ATCACTACAGAAATCGAGAGGGCCTGTCTGTTCAGGAATCAGTGTTGCTATGAGAATTTTCTGT
ATTCACTGACAACAGGGGAATAGAAACCATATGATGCCCGTGTTTATAATTGCCAAAGCAGTAT
TGTTTATATTGTAAACAACTTGTGCAGCTCAGTGTGTGTCAGTAAGGAGAGTGTGGGGTGCTTC
CCTCCGTGTAGAGGCCACTGAAGAAGAGCGATTCGTTTGCGTCCTGGCTGAACGTCTGAGAGTG
ACCTGGAAACACGGCCAGGTTCTCTATGCTCTTCCCTTTGTGTCTCCCCCTCACTCCCGGTCTG
TTCTGACTACTGTCAGAAAGCACTGAGACACTGTAGAACACATCCTCTGAGGGCTGTCCCTCGA
CTCTGACTAGATGAGGCAAACACCTGTGCACATAGATTTTGTTTTTTAAAAAACCACCTTTAAT
CTAGATCCATGGAATAACTGTTTTTTTTTTTTTACCCCTTATCTTTTGGCCCACCCCACCTGGA
CATATTTTAACCTATGTTCTAAACTAAAACTAACTAAAGTTTATCCGACTTTATGAATCCAGCG
CCTTTCAGAATGTCATTCTCCTTCAGGTGCTGCCATTTTCTCAGCTCCTGAAAGTTAAAGGCTG
TGGAGAAAGGCTCACCACTCGATGGTGCCTAAAGTGGTTCAGTTAGCCAGAGTGAGCGGCTGCA
CAGCGTTCACTGTGTCCCCTAAACTCCAAGTGTCTCGGTGCTGCCATGCCCTGGGCTCTGGACC
GGCTGCAGAGGGACCTGGAAGTCAGACCTTGCAGTGCCGTAGGCGGTGGGCAGTTCCTTGTCAC
AGTAAAGCAAGGCTGCATCTCCCTCACAGGCCCAGGGCACCGTCCGTCCGTCCATCCGCACGGC
TTTGTCACCCAGGCTGCACAGAGTGTAGTAGGTGGATGGGTGCTGCAGCACTCACTGGGCCATT
ACATCGCCCTGATCAAAACTGTGAAATGCCCTAATGACTGATAAGAATCTAGAGTTTTGATCTT
TGTAAAAAAGAAAAAAAAGTAGTTTGTTTCATAGTTTTGGAAATTTCTTTCAATGAAAAATAAT
CGAAGTTCATGTTTTTAAAAAGGCAATGATTCCTTTATGCTGTCACACACTACTGTCACCAAGA
CACTGACAAAGAGCGGGTTCTCCAAGAACCATGGCTGTGTCTCCGTAGATGCTCGCCCACCATT
ACCCTCTTGTACTCTTGTAGGAAGGCCAACAGTGACGCTCCCCCGCCCCACAGCGGGACTTAGG
CTTTTGAGGTACAAGAATATGTCTTCATGAAAGTAACATTGTTTATCTATCAAACGTGACAATA
TTTTGATGTATATAATGATTCTAATGTAATTTAATTAACGGAATGATGTTTTTAAGTGTGGAAG
CAAATGCAGTATATTAAAAGTGGACACCACACCGACACCCCCTACTCCTGACCAAATAACCAGG
CTCTTGATTTAGATCATGTGGAAGGTGAGAAATAAATGTATGTAGACATGTAGTTGAGGATCTT
ACGGTTCTTAGAGTATGACTCTGGGACTCGTAAGGAGCAAGCTGTACAATGTAGTTCATGAGGG
CAGCATCTGTGCCTCTTCAGAAAGTACATATCTAGTGGTAAATAATGTAGATTATATATATATA
TATATATATATATATGCAGTATATATGGACACACTATTTTCTTATGTCATCTATGGCCTTTTTT
TATCTGTGTACTTTTTGATGTGATTGTTTTTAACACGCTAAGAGTAATCCGTGTACTTTGTTCT
GCGTCTTCTGTGCAGCTTCCCAGTGGCAGGTGCTGCACCCCGGGGCTGGCCGGGCCCGCAGATG
TGCCACCAGCAGATCTTACACACGCTCAGCTCTCTGCTTGCATTCCAGTGAGACCGTGTTTAGA
ACCACGTCGCCTTTCCTTGGCTTAAGCGTTTCTAATGGCAGCAAAGTCTTCCCCTCCATAAGAT
GTACCTCTGTTGGCTTTCAGTAGGAGATTTTAATTTAAAATTATTTTGCCACTATACAATTTTA
TTTTAAATTTATTTTTAAATAAAAGAAATGATAAGAGAAATAACACTGACAAAGTGATTCAAAA
TATATTTATAGAAAACGTTTGCTGAGGGCATTCCAGGCAGAGCAGCCAGTCAGGTTCCATAACT
GCACGCCCACAGTGTGCTTGCCCTGGCTGCGTCTCCCCTCATGGTATCTTGGCCCACTTTTGTC
AAAAGTAAACATTTGGGTGTGGTATCGTAAGTTTCTTCAGAAGGAGTCTTGCTGGTCTTTACGT
AACTAGTGAACTTAAGGTTGTTTGGGGTTTTGTTTTTGTTTTTGTTTTGGTGTGTGATTGGTTG
GTTTGCTTGTTTGTTTGTTTGCTTTGCTTTGCTTTTAATTCTCAAGTCTCGCCCTTATACCACC
TAAATCTTATCTTGGGTAAAACACAAGGAGGCATATTCCCCGTGTCTAATGCTGTCCTCTTGAG
ACTCTTTCTAACAAAGATGCCCCAAGTTGTCTTATGTTCCTGTTGTGGGATGTTTACAAACGGT
TTGTTGTTATTTTGGTTTCTGAAGATGGAGTCTTGCATATGTCCTGCCTGATCTTACCGTGTAC
ACGAGTCTGACCCGGAAATTGAGGTGCTCCTCCCTTAGCCTGCAGATGCACCTCCCATCTTGCT
CAGCACAGGGTTTTCGTGGTGTGGGTTTTGATTGTCTTTGTTTTCAGGGGTGGACATTGAACAC
GTCGTCTCAAACACTGCCTGGGAACTAGTGTTTCAAATTCTGTGTAGGTCAGAAGTTTTGGAGC
TCAAAAAAGTGGTATCAGGAAAGTTAGGGAAAAGTCCTCTGGCAACAACGTTATCAGCTGTCCT
CATGTCAAGATTTCTGCTAGTCACAGCTAAGTAGCTTCGAGAAAGGAGGTGTGACCCTCTCACC
CCCAGACGCTTACACACTCCTGCAAAGTAGACAGAACCTGCAGATTGCCGATACCTGTCGGTGG
TCTGCTCCTCAGCCCAGCTGCTATCCAAGCCCTTTACAGTGAGAAGTCCCCGCCCTGCCTTCAT
TTGACCATCAGTACTGAGCAGCTAGAACTCACAGGGACTGTGTCTCCACACTTGAGAACATGAG
GGCTTTGATTTGAGTCCATGGGTAATCCTGAACAGTTGCCATCCTGACGTCTTCCTGAATCTTC
TCATGTGTGAGCATGGGATATGTCTGTTCAGGGCTGCAATTTCAGTGTTTTGTGGGTGGTCTGT
TTCCTTACTAGGACTTCTTCTCTGTTGCTGTTTTCTTCTCTGTCGTCAGGACTGTTTTCTACCC
TCCTGGAGTCTTGAAACCTGCTCTCCCATTGAAGGAGAGGAAGACTGGGGTTGGCTTACATTTC
TAGGGTGTTGGGAGAGCTGGAGAATTGGGGTCAACATCCCATCCAAAGACTTCATGAGTTAGTT
TCAGTTTAGTGCCAAGGCAACTTCTTTTGGGACGTGTGGGGCTTGAGGATTGGGGGTTGACAGG
GATCATAATCCGATAGACACTTTGTTATCCAGAGAGCATTGGTAATTTGCCATAAGTGACCCAA
AGCCACCAGAGAGTGCATGTCCCAGAGAAGAAGGCCAAGCAGAGCAGGCAGGCACCCACATGGC
AGACTTACCCATGAGAGAGGGCAGCAGTATTCTGTGCATGTTAGACGTGTGGGTTGGAGGCTGT
CAGATCTGTTTGGTAGGCTGAGTTTGCTGTCCAGTAGTTGTGTGACTTTGGGCAAGTCCCAGAC
TTCTTCTTGGCCTCGCTGACCTTAGCGAGAATGTGGGCATTTGAGAGGTACGGCAGAAGAGAAG
GCAGTCATGATCTGATTGTGTGAGTGATGGAGTTACCGGTGGTAGTGGTTTGAGTTTTGTGTCT
GTGTCAGCTGCTGTTCTAAGTCCTGGTAGAAACTGATGTGACAAACCCTTGTTTTCATGGATCT
TCCGCCCTGACCCACTTACCTCTAAACTGAAGGTGGGTTTTTTGGTTTTGTTTCTGGTGTTTGC
TTTCTGACTGTTGGTCTTTCGTATTTCCTAGGATCGAGCTGATTGGTCTGAAGTGTTTGGTTCA
GTGTCATGCACTAATACGTGTTGTTCTCTGTAACTACGTGTCACGGCACTAGGCTTTAGTGGGC
CAGGAGGGGTTTGACCTTGTTCTCACGAGACTGAGAGTCTGAAGAGCAGCCCAGGGGTAAAGGC
AGTCAACTTGCATGTGATACAAGACAGGAAAAGCAGAGCCGGTGTGACTTGAGATGGCGCCAGC
CCCTCACGTATTGTGGTTGGGTGGGTGGTATAAAATGCAGCAGACCTGTGCTCGGATGTGGGGG
TGGCAGAGTCTGTTTGTGTTTGGCCAGGGGGAGATGCTTGCTGGCCTCCTGTCACCCAGAGCCA
CATTCAGGTCACATTGTGAGCACAAACAGGAGGTGGCAAGCCCCTTGAAGGTTTGGGTGGGGTG
GGAGTCGCTGTATGGAAGGACAAGGTGAGGCGGGGACACGGAGGAGAAGTCTGTGGGGAAGACA
GTGCTGAGGGGAGGCTGCTTTGCCTGCCGTGTTCTCCAGGCTCTCTCCAGGCTGCCCCTGGCTT
CTGGTCTGGTGCCCTCTTGTACTCAGAAGTATTAAACACTGATCATGAAACCCTC

hide sequence

RefSeq Acc Id:

XM_006254236 ⟹ XP_006254298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	76,737,870 - 76,792,163 (-)	NCBI
mRatBN7.2	17	71,828,433 - 71,882,722 (-)	NCBI
Rnor_6.0	17	75,759,428 - 75,807,568 (-)	NCBI
Rnor_5.0	17	77,415,385 - 77,542,080 (-)	NCBI

Sequence:

show sequence

TGAGGAGGAGCTCCCGTATCCTAACGCAGCCGCGGACCGGACTCTTCCATCATCATCTCTGAGC
CTCGGAGGAGAGGATGCGGAATAGATGTCCCATTTAGGGCGTAATTCCTAAGCTCTACACCTCG
AACAGCTGCAAGTCTCTGTTAATCACCTCCCACTGTAAAAAGAAGCTTCTCTGATGAGGCTTGA
CAGACAGCTACAGTAATCTACAGGTACAGCACTGAGTCACTAGGAGTAACGCATCCCCGGTGAT
CTTTATGTGCCCTCTGGGTAGTAGACCAGGAGCTCTGAGAGAGTAGCCGTCCTTGAGATTTTGT
TCAGCTTCTCCCAAGCAGTGACTGAAACATGTCCTGTGGTCAGTTAACTATGTTAAGGCCTTAG
ACAAGGGACACCCTATTCAGCGAGGAGCTGCTTCTCCAATTGAGTGGGCATGAGTAGTAGGGGC
TCCCTACTCCTCCCCGTGCTCTTCCCAAATGAATTGGAGAATTAAAGTAAAGGTAGTTTGTTTG
CGTGTATTCTATGCAAGGGAAGGGAGCTGAACTTCAAACAATGCAGGTAAAAGTAAAAATGTAA
TTAAAAATATTCTAGGGAAATTTTTAAGATCAAAATTTTCTGAAAATGAAAACTGTAGCCAAAC
CTTAAGATGTAAACAGAATTGTTATTTCCCATATATGAAGAATACCTATATGAACGCCTCCTGC
GGGTGAGTGATAGGCTGCCAAGTTCTCTGGTAGTATCCATAGTCAGGAGGCTTTGACAGGGCTT
TAACAGCTGTTAACATAGCTGAGTAACAAGCCCCTCCTGTCACTTCTTTTGTCCTGACTTTACT
AATTTTCTGACCCACTGATACTACCACAGGACCCCTCCCCACCCTGTCCTTCCTTTCAGCTCAG
ATCTTACTGTAGCCATTACAGATGCTCCCTCCCTCCCTTCCTCCATGTCACAAAAAACATACTT
TAGATCTTGAATGTTGATCTTTCCCTTGGCTAATACTGATCGATTGGCCTCTAGACAGATGTCC
CTATCACAGTGAGCAGGAGCTCCTTCCCCCAGACTCCAGGCCAGTCTCCTCTCAGCAGAGCTGA
GCTGTGAGCTCTGCCTCCAGGTGTGCCCAGAATTCGGCTTCATCTCCATTCTGCTGCCCTGTCC
CCTGTGCTCTCTCTGGAGCTTCCTGTCTTCCTGCCTCAGTCTTTACCTTTCTCTTGGTCTTACC
TGTTCAGTAACAATTAAAATGATCCTGCTAAAAGGAGTTAAGGACGTGACGCTTTCTGATCAGA
ACTTTTTTCATCTACAGCAAATGCAAGGACCAAGTAACAATGGTCCTCAGTGTTGAGGCATCTT
GCTCCTTGTGTGACTTCCCTTCTTTCTGCCCTGGTTCCTGAGTGTCTCCTGAGTGTGAGCGTGG
ACCAGAATCCCTCTGCAAGGCCTACCCACTGGCTTCTTCTCTCGTGGGGTGTTTTGCTGACCTC
ATAGTCGCTGCAAGGCTCAGCCCTTTCACATTCTCCAAGTTATCCAAGTGTCACTTGTGGAATG
TGGCTGACTGTCCTTGGTCTTCTAACCTAAAATTGGGAATTTCTCCTGGCTGGTGTTAATTTTC
TTCCTCCCCCTCATCTTGTTTGTTTTCTTTTCTTTTTCTCTATCGCACATGGCACCGTCCATGT
GTTACGTATGTTGAAGATTTGCTGCCGTTAGAGTCACAGTCCACCTCCATGATGACATTAAACA
TCGACTTAGAGCTGCTGGACACTCTGTTGACTTGCAGTGTCCTACATTTGCAAGCAAAAGCAAC
TGGAAATCGAAAGGACTTCCAAGTGGCTGAAAATGCTGAAGAGATGGGAGAGATACAAGAACAC
TGAGAAGTTCCATCGACGAATTTACAAAGGAATTCCACTCCAGCTCCGAGGTGAAGTCTGGGCC
CTTCTTCTTGAGATCCCTAAAATGAAAGAAGAAACAAGAGACCTCTATAGTAAATTAAAGCACA
GAGCACGGGGTTGTTCGCCTGATATCAGACAAATAGACCTTGACGTGAACCGCACATTCAGGGA
CCATATCATGTTTAGAGACAGATATGGTGTCAAGCAGCAATCCTTGTTCCACGTTCTTGCTGCC
TACTCCATCTACAATACGGAGGTCGGGTACTGTCAAGGGATGAGTCAGATCACAGCTCTGCTCC
TGATGTACATGAATGAGGAGGACGCCTTCTGGGCCCTGGTCAAGCTCTTCTCAGGCCCCAAGCA
CGCCATGCATGGTTTTTTTGTCCAAGGTTTCCCTAAACTCTTGAGATTTCAAGAACATCATGAG
AAAATTCTGAACAAATTTTTGTCCAAACTAAAGCAGCACTTGGATTCTCAAGAAATCTATACAA
GTTTTTACACAATGAAGTGGTTTTTTCAGTGTTTCCTTGACCGAACTCCCTTCAGGCTGAACCT
CCGGATCTGGGACATCTACATCTTTGAGGGAGAGCGAATTCTCACTGCTATGTCTTATACAATC
TTGAAGCTACACAGAAAGCATCTAATGAAGTTGTCTATGGAAGAACTTGTAGAATTTCTTCAGG
AGACTCTCGCCAAGGACTTTTTCTTCGAGGATGATTTCGTAATAGAGCAACTGCAGGTCTCTAT
GACAGAGTTAAAGCGGGCCAAGTTAGATCTCCCAGAACCTGGTAAGGAGGATGAATACCCAAGG
AAACCCCTGGGGCAGCTCCCACCTGAGTATACCAATCACTTGAGCAATGGACAAAGAAGTGTTG
GCAGGCCCAGCCCCAAAATAAGCAGCAGGAGAGAAGATGGGTCGCCTCACAAGGCACATGAGCA
CTCTCCTGCCCATCACAGCAGAAATGGCACCCCAGAAAGAGTCGGGCAGTCAAGACGCAAGTCT
GTGGATGAGGGTAGTAAAAATCTGAAGCAGGAGGCAGATTTTCAGAGAAAACCTTCATCGGGCA
CACAGGACAACTCCAAGCATTATAACCATGCAACTGCTAACCAAAATAGCAATGCACTTTCCAA
CATCAGGAAGGAGTTCGTGCCCAAATGGAGGAAGCCATCGGAGGCCTCAGCTATCGAAAGAACT
GCTAAATACGCCATTGAAGGCAGAAGTCACTCAGTGTTTCCCGCTCTCTCTGTCGCAGTCCCAA
GTTCTGCTGAGACCCGATTGTCAAACTCAAGGCAAAAGATGAAGGCTTTTGATGGTGGTGAGGG
GAACCGGGGTTCTAATGCTTCCCAGTATGACAACGTACCTGGGAGTGAGAGCGAGCCTGGAGCG
TCTGCAGAGGAGGGACCGGAGCGGACTCACCCTCACAGTCCAAGGAAGCACTCTGAGCCAAGTC
CCAGTCCATCAAAAGTACCCAACAAGTTTACCTTTAAAGTGCAGCCTCCCAGCCATGTACGATA
CCCATCCCAGCCAGCAGGGGAGGATCACAGAGCTGCATATCCACCCTCCTACAGCAACCCGCCT
GTCTACCATGGAAATTCTCCAAAACACATCCCTACGGCCCACAGTGGCTTTGCGTCCACACAGA
TCAGCCTGGGGCCTCAAGTGAACCCTTCCAGGAGACCTTACGGTTCCTCTCTTTCAGGTGACAC
TTCTCCAGAGAAGTCCTACGGCCGCCTAACTCCTGTTCTTCCCTCTAGTCGAATTGAAGTCCTT
CCCATAGACATTGGTGCCAGGGGATACGGCAGTTCAGGGTCACCAAAGAGCGGAAAGTTCATCC
TTCCCCCGGTGGACTATTTGCCTGAGAACAGAAAATGGTCAGAATTTAGTTACACATACAGACC
TGAGGTGCATGGTCAGTCATGGACTCAGGATGCTACCCGTAGCCACTTAAGCAATTTACCAAAA
TACACAGCCTTTCCGCACATACCTCTTCAGGACCACGGCCTTCCAGAAGTGTCTGTAGACAGTC
CAGTGAGGTATAAGACTTCACCAGCTGTGGAAGAGGCCAGTCCTCCTGGGTATCCATACGCAGG
GCCCACACCTTCAGCACATCACTACAGAAATCGAGAGGGCCTGTCTGTTCAGGAATCAGTGTTG
CTATGAGAATTTTCTGTATTCACTGACAACAGGGGAATAGAAACCATATGATGCCCGTGTTTAT
AATTGCCAAAGCAGTATTGTTTATATTGTAAACAACTTGTGCAGCTCAGTGTGTGTCAGTAAGG
AGAGTGTGGGGTGCTTCCCTCCGTGTAGAGGCCACTGAAGAAGAGCGATTCGTTTGCGTCCTGG
CTGAACGTCTGAGAGTGACCTGGAAACACGGCCAGGTTCTCTATGCTCTTCCCTTTGTGTCTCC
CCCTCACTCCCGGTCTGTTCTGACTACTGTCAGAAAGCACTGAGACACTGTAGAACACATCCTC
TGAGGGCTGTCCCTCGACTCTGACTAGATGAGGCAAACACCTGTGCACATAGATTTTGTTTTTT
AAAAAACCACCTTTAATCTAGATCCATGGAATAACTGTTTTTTTTTTTTTACCCCTTATCTTTT
GGCCCACCCCACCTGGACATATTTTAACCTATGTTCTAAACTAAAACTAACTAAAGTTTATCCG
ACTTTATGAATCCAGCGCCTTTCAGAATGTCATTCTCCTTCAGGTGCTGCCATTTTCTCAGCTC
CTGAAAGTTAAAGGCTGTGGAGAAAGGCTCACCACTCGATGGTGCCTAAAGTGGTTCAGTTAGC
CAGAGTGAGCGGCTGCACAGCGTTCACTGTGTCCCCTAAACTCCAAGTGTCTCGGTGCTGCCAT
GCCCTGGGCTCTGGACCGGCTGCAGAGGGACCTGGAAGTCAGACCTTGCAGTGCCGTAGGCGGT
GGGCAGTTCCTTGTCACAGTAAAGCAAGGCTGCATCTCCCTCACAGGCCCAGGGCACCGTCCGT
CCGTCCATCCGCACGGCTTTGTCACCCAGGCTGCACAGAGTGTAGTAGGTGGATGGGTGCTGCA
GCACTCACTGGGCCATTACATCGCCCTGATCAAAACTGTGAAATGCCCTAATGACTGATAAGAA
TCTAGAGTTTTGATCTTTGTAAAAAAGAAAAAAAAGTAGTTTGTTTCATAGTTTTGGAAATTTC
TTTCAATGAAAAATAATCGAAGTTCATGTTTTTAAAAAGGCAATGATTCCTTTATGCTGTCACA
CACTACTGTCACCAAGACACTGACAAAGAGCGGGTTCTCCAAGAACCATGGCTGTGTCTCCGTA
GATGCTCGCCCACCATTACCCTCTTGTACTCTTGTAGGAAGGCCAACAGTGACGCTCCCCCGCC
CCACAGCGGGACTTAGGCTTTTGAGGTACAAGAATATGTCTTCATGAAAGTAACATTGTTTATC
TATCAAACGTGACAATATTTTGATGTATATAATGATTCTAATGTAATTTAATTAACGGAATGAT
GTTTTTAAGTGTGGAAGCAAATGCAGTATATTAAAAGTGGACACCACACCGACACCCCCTACTC
CTGACCAAATAACCAGGCTCTTGATTTAGATCATGTGGAAGGTGAGAAATAAATGTATGTAGAC
ATGTAGTTGAGGATCTTACGGTTCTTAGAGTATGACTCTGGGACTCGTAAGGAGCAAGCTGTAC
AATGTAGTTCATGAGGGCAGCATCTGTGCCTCTTCAGAAAGTACATATCTAGTGGTAAATAATG
TAGATTATATATATATATATATATATATATATGCAGTATATATGGACACACTATTTTCTTATGT
CATCTATGGCCTTTTTTTATCTGTGTACTTTTTGATGTGATTGTTTTTAACACGCTAAGAGTAA
TCCGTGTACTTTGTTCTGCGTCTTCTGTGCAGCTTCCCAGTGGCAGGTGCTGCACCCCGGGGCT
GGCCGGGCCCGCAGATGTGCCACCAGCAGATCTTACACACGCTCAGCTCTCTGCTTGCATTCCA
GTGAGACCGTGTTTAGAACCACGTCGCCTTTCCTTGGCTTAAGCGTTTCTAATGGCAGCAAAGT
CTTCCCCTCCATAAGATGTACCTCTGTTGGCTTTCAGTAGGAGATTTTAATTTAAAATTATTTT
GCCACTATACAATTTTATTTTAAATTTATTTTTAAATAAAAGAAATGATAAGAGAAATAACACT
GACAAAGTGATTCAAAATATATTTATAGAAAACGTTTGCTGAGGGCATTCCAGGCAGAGCAGCC
AGTCAGGTTCCATAACTGCACGCCCACAGTGTGCTTGCCCTGGCTGCGTCTCCCCTCATGGTAT
CTTGGCCCACTTTTGTCAAAAGTAAACATTTGGGTGTGGTATCGTAAGTTTCTTCAGAAGGAGT
CTTGCTGGTCTTTACGTAACTAGTGAACTTAAGGTTGTTTGGGGTTTTGTTTTTGTTTTTGTTT
TGGTGTGTGATTGGTTGGTTTGCTTGTTTGTTTGTTTGCTTTGCTTTGCTTTTAATTCTCAAGT
CTCGCCCTTATACCACCTAAATCTTATCTTGGGTAAAACACAAGGAGGCATATTCCCCGTGTCT
AATGCTGTCCTCTTGAGACTCTTTCTAACAAAGATGCCCCAAGTTGTCTTATGTTCCTGTTGTG
GGATGTTTACAAACGGTTTGTTGTTATTTTGGTTTCTGAAGATGGAGTCTTGCATATGTCCTGC
CTGATCTTACCGTGTACACGAGTCTGACCCGGAAATTGAGGTGCTCCTCCCTTAGCCTGCAGAT
GCACCTCCCATCTTGCTCAGCACAGGGTTTTCGTGGTGTGGGTTTTGATTGTCTTTGTTTTCAG
GGGTGGACATTGAACACGTCGTCTCAAACACTGCCTGGGAACTAGTGTTTCAAATTCTGTGTAG
GTCAGAAGTTTTGGAGCTCAAAAAAGTGGTATCAGGAAAGTTAGGGAAAAGTCCTCTGGCAACA
ACGTTATCAGCTGTCCTCATGTCAAGATTTCTGCTAGTCACAGCTAAGTAGCTTCGAGAAAGGA
GGTGTGACCCTCTCACCCCCAGACGCTTACACACTCCTGCAAAGTAGACAGAACCTGCAGATTG
CCGATACCTGTCGGTGGTCTGCTCCTCAGCCCAGCTGCTATCCAAGCCCTTTACAGTGAGAAGT
CCCCGCCCTGCCTTCATTTGACCATCAGTACTGAGCAGCTAGAACTCACAGGGACTGTGTCTCC
ACACTTGAGAACATGAGGGCTTTGATTTGAGTCCATGGGTAATCCTGAACAGTTGCCATCCTGA
CGTCTTCCTGAATCTTCTCATGTGTGAGCATGGGATATGTCTGTTCAGGGCTGCAATTTCAGTG
TTTTGTGGGTGGTCTGTTTCCTTACTAGGACTTCTTCTCTGTTGCTGTTTTCTTCTCTGTCGTC
AGGACTGTTTTCTACCCTCCTGGAGTCTTGAAACCTGCTCTCCCATTGAAGGAGAGGAAGACTG
GGGTTGGCTTACATTTCTAGGGTGTTGGGAGAGCTGGAGAATTGGGGTCAACATCCCATCCAAA
GACTTCATGAGTTAGTTTCAGTTTAGTGCCAAGGCAACTTCTTTTGGGACGTGTGGGGCTTGAG
GATTGGGGGTTGACAGGGATCATAATCCGATAGACACTTTGTTATCCAGAGAGCATTGGTAATT
TGCCATAAGTGACCCAAAGCCACCAGAGAGTGCATGTCCCAGAGAAGAAGGCCAAGCAGAGCAG
GCAGGCACCCACATGGCAGACTTACCCATGAGAGAGGGCAGCAGTATTCTGTGCATGTTAGACG
TGTGGGTTGGAGGCTGTCAGATCTGTTTGGTAGGCTGAGTTTGCTGTCCAGTAGTTGTGTGACT
TTGGGCAAGTCCCAGACTTCTTCTTGGCCTCGCTGACCTTAGCGAGAATGTGGGCATTTGAGAG
GTACGGCAGAAGAGAAGGCAGTCATGATCTGATTGTGTGAGTGATGGAGTTACCGGTGGTAGTG
GTTTGAGTTTTGTGTCTGTGTCAGCTGCTGTTCTAAGTCCTGGTAGAAACTGATGTGACAAACC
CTTGTTTTCATGGATCTTCCGCCCTGACCCACTTACCTCTAAACTGAAGGTGGGTTTTTTGGTT
TTGTTTCTGGTGTTTGCTTTCTGACTGTTGGTCTTTCGTATTTCCTAGGATCGAGCTGATTGGT
CTGAAGTGTTTGGTTCAGTGTCATGCACTAATACGTGTTGTTCTCTGTAACTACGTGTCACGGC
ACTAGGCTTTAGTGGGCCAGGAGGGGTTTGACCTTGTTCTCACGAGACTGAGAGTCTGAAGAGC
AGCCCAGGGGTAAAGGCAGTCAACTTGCATGTGATACAAGACAGGAAAAGCAGAGCCGGTGTGA
CTTGAGATGGCGCCAGCCCCTCACGTATTGTGGTTGGGTGGGTGGTATAAAATGCAGCAGACCT
GTGCTCGGATGTGGGGGTGGCAGAGTCTGTTTGTGTTTGGCCAGGGGGAGATGCTTGCTGGCCT
CCTGTCACCCAGAGCCACATTCAGGTCACATTGTGAGCACAAACAGGAGGTGGCAAGCCCCTTG
AAGGTTTGGGTGGGGTGGGAGTCGCTGTATGGAAGGACAAGGTGAGGCGGGGACACGGAGGAGA
AGTCTGTGGGGAAGACAGTGCTGAGGGGAGGCTGCTTTGCCTGCCGTGTTCTCCAGGCTCTCTC
CAGGCTGCCCCTGGCTTCTGGTCTGGTGCCCTCTTGTACTCAGAAGTATTAAACACTGATCATG
AAACCCTC

hide sequence

RefSeq Acc Id:

XM_039095538 ⟹ XP_038951466

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	76,737,870 - 76,783,547 (-)	NCBI
mRatBN7.2	17	71,828,433 - 71,874,106 (-)	NCBI

RefSeq Acc Id:

XM_063276241 ⟹ XP_063132311

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	76,737,870 - 76,792,163 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099590	(Get FASTA)	NCBI Sequence Viewer
	XP_006254294	(Get FASTA)	NCBI Sequence Viewer
	XP_006254295	(Get FASTA)	NCBI Sequence Viewer
	XP_006254298	(Get FASTA)	NCBI Sequence Viewer
	XP_038951466	(Get FASTA)	NCBI Sequence Viewer
	XP_063132311	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL78646	(Get FASTA)	NCBI Sequence Viewer
	EDL78647	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000046740
	ENSRNOP00000046740.2
	ENSRNOP00000085611
	ENSRNOP00000085611.1
	ENSRNOP00000093675.1
	ENSRNOP00000096234
	ENSRNOP00000096234.2

RefSeq Acc Id:

NP_001099590 ⟸ NM_001106120

- UniProtKB:

D3ZL57 (UniProtKB/TrEMBL), A6JLX0 (UniProtKB/TrEMBL), A0A8I6GLZ6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNSDQDVALKLAQERAEIVAKYDRGREGAEIEPWEDADYLVYKVTDRFGFLHEEELPYPNAAAD
RQKQLEIERTSKWLKMLKRWERYKNTEKFHRRIYKGIPLQLRGEVWALLLEIPKMKEETRDLYS
KLKHRARGCSPDIRQIDLDVNRTFRDHIMFRDRYGVKQQSLFHVLAAYSIYNTEVGYCQGMSQI
TALLLMYMNEEDAFWALVKLFSGPKHAMHGFFVQGFPKLLRFQEHHEKILNKFLSKLKQHLDSQ
EIYTSFYTMKWFFQCFLDRTPFRLNLRIWDIYIFEGERILTAMSYTILKLHRKHLMKLSMEELV
EFLQETLAKDFFFEDDFVIEQLQVSMTELKRAKLDLPEPGKEDEYPRKPLGQLPPEYTNHLSNG
QRSVGRPSPKISSRREDGSPHKAHEHSPAHHSRNGTPERVGQSRRKSVDEGSKNLKQEADFQRK
PSSGTQDNSKHYNHATANQNSNALSNIRKEFVPKWRKPSEASAIERTAKYAIEGRSHSVFPALS
VAVPSSAETRLSNSRQKMKAFDGGEGNRGSNASQYDNVPGSESEPGASAEEGPERTHPHSPRKH
SEPSPSPSKVPNKFTFKVQPPSHVRYPSQPAGEDHRAAYPPSYSNPPVYHGNSPKHIPTAHSGF
ASTQISLGPQVNPSRRPYGSSLSGDTSPEKSYGRLTPVLPSSRIEVLPIDIGARGYGSSGSPKS
GKFILPPVDYLPENRKWSEFSYTYRPEVHGQSWTQDATRSHLSNLPKYTAFPHIPLQDHGLPEV
SVDSPVRYKTSPAVEEASPPGYPYAGPTPSAHHYRNREGLSVQESVLL

hide sequence

RefSeq Acc Id:	XP_006254295 ⟸ XM_006254233
- Peptide Label:	isoform X2
- UniProtKB:	D3ZL57 (UniProtKB/TrEMBL), A6JLX0 (UniProtKB/TrEMBL), A0A8I6GLZ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSDQDVALKLAQERAEIVAKYDRGREGAEIEPWEDADYLVYKVTDRFGFLHEEELPYPNAAAD RQKQLEIERTSKWLKMLKRWERYKNTEKFHRRIYKGIPLQLRGEVWALLLEIPKMKEETRDLYS KLKHRARGCSPDIRQIDLDVNRTFRDHIMFRDRYGVKQQSLFHVLAAYSIYNTEVGYCQGMSQI TALLLMYMNEEDAFWALVKLFSGPKHAMHGFFVQGFPKLLRFQEHHEKILNKFLSKLKQHLDSQ EIYTSFYTMKWFFQCFLDRTPFRLNLRIWDIYIFEGERILTAMSYTILKLHRKHLMKLSMEELV EFLQETLAKDFFFEDDFVIEQLQVSMTELKRAKLDLPEPGKEDEYPRKPLGQLPPEYTNHLSNG QRSVGRPSPKISSRREDGSPHKAHEHSPAHHSRNGTPERVGQSRRKSVDEGSKNLKQEADFQRK PSSGTQDNSKHYNHATANQNSNALSNIRKEFVPKWRKPSEASAIERTAKYAIEGRSHSVFPALS VAVPSSAETRLSNSRQKMKAFDGGEGNRGSNASQYDNVPGSESEPGASAEEGPERTHPHSPRKH SEPSPSPSKVPNKFTFKVQPPSHVRYPSQPAGEDHRAAYPPSYSNPPVYHGNSPKHIPTAHSGF ASTQISLGPQVNPSRRPYGSSLSGDTSPEKSYGRLTPVLPSSRIEVLPIDIGARGYGSSGSPKS GKFILPPVDYLPENRKWSEFSYTYRPEVHGQSWTQDATRSHLSNLPKYTAFPHIPLQDHGLPEV SVDSPVRYKTSPAVEEASPPGYPYAGPTPSAHHYRNREGLSVQESVLL hide sequence

RefSeq Acc Id:	XP_006254294 ⟸ XM_006254232
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A486 (UniProtKB/TrEMBL), A0A8I6GLZ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRTETAIISQDQPVCLTKDSDQDVALKLAQERAEIVAKYDRGREGAEIEPWEDADYLVYKVTDR FGFLHEEELPYPNAAADRQKQLEIERTSKWLKMLKRWERYKNTEKFHRRIYKGIPLQLRGEVWA LLLEIPKMKEETRDLYSKLKHRARGCSPDIRQIDLDVNRTFRDHIMFRDRYGVKQQSLFHVLAA YSIYNTEVGYCQGMSQITALLLMYMNEEDAFWALVKLFSGPKHAMHGFFVQGFPKLLRFQEHHE KILNKFLSKLKQHLDSQEIYTSFYTMKWFFQCFLDRTPFRLNLRIWDIYIFEGERILTAMSYTI LKLHRKHLMKLSMEELVEFLQETLAKDFFFEDDFVIEQLQVSMTELKRAKLDLPEPGKEDEYPR KPLGQLPPEYTNHLSNGQRSVGRPSPKISSRREDGSPHKAHEHSPAHHSRNGTPERVGQSRRKS VDEGSKNLKQEADFQRKPSSGTQDNSKHYNHATANQNSNALSNIRKEFVPKWRKPSEASAIERT AKYAIEGRSHSVFPALSVAVPSSAETRLSNSRQKMKAFDGGEGNRGSNASQYDNVPGSESEPGA SAEEGPERTHPHSPRKHSEPSPSPSKVPNKFTFKVQPPSHVRYPSQPAGEDHRAAYPPSYSNPP VYHGNSPKHIPTAHSGFASTQISLGPQVNPSRRPYGSSLSGDTSPEKSYGRLTPVLPSSRIEVL PIDIGARGYGSSGSPKSGKFILPPVDYLPENRKWSEFSYTYRPEVHGQSWTQDATRSHLSNLPK YTAFPHIPLQDHGLPEVSVDSPVRYKTSPAVEEASPPGYPYAGPTPSAHHYRNREGLSVQESVL L hide sequence

RefSeq Acc Id:	XP_006254298 ⟸ XM_006254236
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6GLZ6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLKRWERYKNTEKFHRRIYKGIPLQLRGEVWALLLEIPKMKEETRDLYSKLKHRARGCSPDIRQ IDLDVNRTFRDHIMFRDRYGVKQQSLFHVLAAYSIYNTEVGYCQGMSQITALLLMYMNEEDAFW ALVKLFSGPKHAMHGFFVQGFPKLLRFQEHHEKILNKFLSKLKQHLDSQEIYTSFYTMKWFFQC FLDRTPFRLNLRIWDIYIFEGERILTAMSYTILKLHRKHLMKLSMEELVEFLQETLAKDFFFED DFVIEQLQVSMTELKRAKLDLPEPGKEDEYPRKPLGQLPPEYTNHLSNGQRSVGRPSPKISSRR EDGSPHKAHEHSPAHHSRNGTPERVGQSRRKSVDEGSKNLKQEADFQRKPSSGTQDNSKHYNHA TANQNSNALSNIRKEFVPKWRKPSEASAIERTAKYAIEGRSHSVFPALSVAVPSSAETRLSNSR QKMKAFDGGEGNRGSNASQYDNVPGSESEPGASAEEGPERTHPHSPRKHSEPSPSPSKVPNKFT FKVQPPSHVRYPSQPAGEDHRAAYPPSYSNPPVYHGNSPKHIPTAHSGFASTQISLGPQVNPSR RPYGSSLSGDTSPEKSYGRLTPVLPSSRIEVLPIDIGARGYGSSGSPKSGKFILPPVDYLPENR KWSEFSYTYRPEVHGQSWTQDATRSHLSNLPKYTAFPHIPLQDHGLPEVSVDSPVRYKTSPAVE EASPPGYPYAGPTPSAHHYRNREGLSVQESVLL hide sequence

Ensembl Acc Id:

ENSRNOP00000046740 ⟸ ENSRNOT00000046266

RefSeq Acc Id:	XP_038951466 ⟸ XM_039095538
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6GH29 (UniProtKB/TrEMBL), A0A8I6GLZ6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000093675 ⟸ ENSRNOT00000112117

Ensembl Acc Id:

ENSRNOP00000085611 ⟸ ENSRNOT00000105956

Ensembl Acc Id:

ENSRNOP00000088429 ⟸ ENSRNOT00000118410

Ensembl Acc Id:

ENSRNOP00000096234 ⟸ ENSRNOT00000103406

RefSeq Acc Id:	XP_063132311 ⟸ XM_063276241
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6GLZ6 (UniProtKB/TrEMBL)

Protein Domains

Rab-GAP TBC

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZL57-F1-model_v2	AlphaFold	D3ZL57	1-816	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700563

Promoter ID:

EPDNEW_R11087

Type:

initiation region

Name:

Usp6nl_1

Description:

USP6 N-terminal like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	75,886,535 - 75,886,595	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311786	AgrOrtholog
BioCyc Gene	G2FUF-8716	BioCyc
Ensembl Genes	ENSRNOG00000017644	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000046266	ENTREZGENE
	ENSRNOT00000046266.4	UniProtKB/TrEMBL
	ENSRNOT00000103406	ENTREZGENE
	ENSRNOT00000103406.2	UniProtKB/TrEMBL
	ENSRNOT00000105956	ENTREZGENE
	ENSRNOT00000105956.2	UniProtKB/TrEMBL
	ENSRNOT00000112117.2	UniProtKB/TrEMBL
Gene3D-CATH	putative rabgap domain of human tbc1 domain family member 14 like domains	UniProtKB/TrEMBL
	Ypt/Rab-GAP domain of gyp1p, domain 1	UniProtKB/TrEMBL
	Ypt/Rab-GAP domain of gyp1p, domain 3	UniProtKB/TrEMBL
InterPro	Rab-GTPase_TBC_sf	UniProtKB/TrEMBL
	Rab_GAP_TBC_domain	UniProtKB/TrEMBL
	RabGAP_TBC	UniProtKB/TrEMBL
KEGG Report	rno:291309	UniProtKB/TrEMBL
NCBI Gene	291309	ENTREZGENE
PANTHER	RAB GTPASE-ACTIVATING PROTEIN 1-LIKE	UniProtKB/TrEMBL
	USP6 N-TERMINAL-LIKE PROTEIN ISOFORM X1	UniProtKB/TrEMBL
Pfam	TBC	UniProtKB/TrEMBL
PhenoGen	Usp6nl	PhenoGen
PROSITE	TBC_RABGAP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017644	RatGTEx
SMART	TBC	UniProtKB/TrEMBL
Superfamily-SCOP	RabGAP_TBC	UniProtKB/TrEMBL
UniProt	A0A8I6A486	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AXD4_RAT	UniProtKB/TrEMBL
	A0A8I6GH29	ENTREZGENE
	A0A8I6GLZ6	ENTREZGENE, UniProtKB/TrEMBL
	A6JLX0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZL57	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Usp6nl	USP6 N-terminal like	Usp6nl_predicted	USP6 N-terminal like (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Usp6nl_predicted	USP6 N-terminal like (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)

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Imported Disease Annotations - CTD

Imported Annotations - PID (archival)