Kdelr3 (KDEL endoplasmic reticulum protein retention receptor 3) - Rat Genome Database

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Gene: Kdelr3 (KDEL endoplasmic reticulum protein retention receptor 3) Rattus norvegicus
Analyze
Symbol: Kdelr3
Name: KDEL endoplasmic reticulum protein retention receptor 3
RGD ID: 1311536
Description: Predicted to enable KDEL sequence binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; protein retention in ER lumen; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be active in cis-Golgi network and endoplasmic reticulum. Predicted to colocalize with COPI-coated vesicle membrane. Orthologous to human KDELR3 (KDEL endoplasmic reticulum protein retention receptor 3); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ER lumen protein retaining receptor 3; ER lumen protein-retaining receptor 3; KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3; LOC315131
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,959,632 - 112,969,858 (+)NCBIGRCr8
mRatBN7.27111,079,236 - 111,089,463 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,079,218 - 111,101,600 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7112,826,823 - 112,837,052 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,050,358 - 115,060,587 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,019,729 - 115,029,960 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07120,749,680 - 120,760,163 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,749,752 - 120,760,160 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,742,981 - 120,753,160 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,556,569 - 117,566,504 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17117,592,592 - 117,601,772 (-)NCBI
Celera7107,410,664 - 107,420,840 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP)
calcitriol  (ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
chloroprene  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
deoxynivalenol  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP)
diquat  (ISO)
dopamine  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
fenoldopam  (EXP)
flutamide  (EXP)
folic acid  (ISO)
fragrance  (ISO)
furan  (EXP)
gentamycin  (EXP)
hydralazine  (ISO)
L-methionine  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
monosodium L-glutamate  (ISO)
N-nitrosodiethylamine  (ISO)
niclosamide  (ISO)
orlistat  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
phenobarbital  (EXP)
phenylephrine  (EXP)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
Salinomycin  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18086916  


Genomics

Comparative Map Data
Kdelr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87112,959,632 - 112,969,858 (+)NCBIGRCr8
mRatBN7.27111,079,236 - 111,089,463 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,079,218 - 111,101,600 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7112,826,823 - 112,837,052 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,050,358 - 115,060,587 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,019,729 - 115,029,960 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07120,749,680 - 120,760,163 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,749,752 - 120,760,160 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,742,981 - 120,753,160 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,556,569 - 117,566,504 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17117,592,592 - 117,601,772 (-)NCBI
Celera7107,410,664 - 107,420,840 (+)NCBICelera
Cytogenetic Map7q34NCBI
KDELR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382238,468,096 - 38,483,447 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2238,468,078 - 38,483,447 (+)EnsemblGRCh38hg38GRCh38
GRCh372238,864,101 - 38,879,452 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362237,194,029 - 37,209,391 (+)NCBINCBI36Build 36hg18NCBI36
Build 342237,188,582 - 37,202,138NCBI
Celera2222,669,670 - 22,685,024 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2221,830,110 - 21,845,492 (+)NCBIHuRef
CHM1_12238,822,859 - 38,838,245 (+)NCBICHM1_1
T2T-CHM13v2.02238,932,363 - 38,947,716 (+)NCBIT2T-CHM13v2.0
Kdelr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,400,609 - 79,411,940 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,400,612 - 79,411,940 (+)EnsemblGRCm39 Ensembl
GRCm381579,516,408 - 79,527,739 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,516,411 - 79,527,739 (+)EnsemblGRCm38mm10GRCm38
MGSCv371579,346,838 - 79,358,169 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361579,343,723 - 79,354,994 (+)NCBIMGSCv36mm8
Celera1581,640,927 - 81,652,257 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.76NCBI
Kdelr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541324,638,518 - 24,648,723 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541324,638,551 - 24,648,723 (+)NCBIChiLan1.0ChiLan1.0
KDELR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22348,323,954 - 48,339,414 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,015,503 - 51,033,281 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02219,370,008 - 19,398,810 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12237,203,671 - 37,221,297 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2237,203,671 - 37,218,893 (+)Ensemblpanpan1.1panPan2
KDELR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,303,177 - 26,315,838 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,297,635 - 26,315,826 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1026,258,318 - 26,279,761 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01027,094,065 - 27,115,513 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1027,094,072 - 27,107,007 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11026,815,496 - 26,836,719 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01027,127,010 - 27,148,233 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01027,303,738 - 27,324,923 (-)NCBIUU_Cfam_GSD_1.0
Kdelr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,815,655 - 9,823,134 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,825,646 - 2,832,637 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,826,746 - 2,833,548 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KDELR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl59,505,206 - 9,515,723 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.159,505,205 - 9,515,723 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,786,308 - 6,796,826 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KDELR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11921,128,357 - 21,139,606 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045104,622,461 - 104,639,102 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kdelr3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247529,620,773 - 9,630,007 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247529,620,768 - 9,629,181 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kdelr3
36 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:64
Count of miRNA genes:52
Interacting mature miRNAs:62
Transcripts:ENSRNOT00000056169
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)794811085116738842Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)794811326116294265Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7103146217116738842Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat

Markers in Region
D7Rat12  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27111,075,397 - 111,075,573 (+)MAPPERmRatBN7.2
Rnor_6.07120,745,849 - 120,746,024NCBIRnor6.0
Rnor_5.07120,739,277 - 120,739,452UniSTSRnor5.0
Celera7107,406,808 - 107,406,983UniSTS
RH 3.4 Map7850.1UniSTS
RH 3.4 Map7850.1RGD
RH 2.0 Map7642.1RGD
SHRSP x BN Map763.5RGD
Cytogenetic Map7q34UniSTS
RH127676  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27111,089,215 - 111,089,403 (+)MAPPERmRatBN7.2
Rnor_6.07120,759,914 - 120,760,101NCBIRnor6.0
Rnor_5.07120,752,913 - 120,753,100UniSTSRnor5.0
RGSC_v3.47117,556,629 - 117,556,816UniSTSRGSC3.4
Celera7107,420,593 - 107,420,780UniSTS
RH 3.4 Map7850.2UniSTS
Cytogenetic Map7q34UniSTS
C80929  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27111,089,683 - 111,089,932 (+)MAPPERmRatBN7.2
Rnor_6.07120,760,382 - 120,760,630NCBIRnor6.0
Rnor_5.07120,753,381 - 120,753,629UniSTSRnor5.0
RGSC_v3.47117,556,100 - 117,556,348UniSTSRGSC3.4
Celera7107,421,061 - 107,421,309UniSTS
Cytogenetic Map7q34UniSTS
AA819656  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27111,089,686 - 111,089,932 (+)MAPPERmRatBN7.2
Rnor_6.07120,760,385 - 120,760,630NCBIRnor6.0
Rnor_5.07120,753,384 - 120,753,629UniSTSRnor5.0
RGSC_v3.47117,556,100 - 117,556,345UniSTSRGSC3.4
Celera7107,421,064 - 107,421,309UniSTS
RH 3.4 Map7857.0UniSTS
Cytogenetic Map7q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 20 6 17 6 4 7 41 28 33 11 4
Low 2 37 35 2 35 4 4 33 7 8 4
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000056169   ⟹   ENSRNOP00000053015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7111,079,218 - 111,101,600 (+)Ensembl
Rnor_6.0 Ensembl7120,755,516 - 120,760,160 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087888   ⟹   ENSRNOP00000074857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7120,749,752 - 120,759,618 (+)Ensembl
RefSeq Acc Id: NM_001127546   ⟹   NP_001121018
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87112,959,632 - 112,969,858 (+)NCBI
mRatBN7.27111,079,236 - 111,089,463 (+)NCBI
Rnor_6.07120,749,680 - 120,760,161 (+)NCBI
Rnor_5.07120,742,981 - 120,753,160 (+)NCBI
RGSC_v3.47117,556,569 - 117,566,504 (-)RGD
Celera7107,410,664 - 107,420,840 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001121018 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI62033 (Get FASTA)   NCBI Sequence Viewer  
  EDM15800 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000053015
  ENSRNOP00000053015.4
RefSeq Acc Id: NP_001121018   ⟸   NM_001127546
- UniProtKB: B1WC77 (UniProtKB/TrEMBL),   F1LPB5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074857   ⟸   ENSRNOT00000087888
RefSeq Acc Id: ENSRNOP00000053015   ⟸   ENSRNOT00000056169

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K947-F1-model_v2 AlphaFold A0A0G2K947 1-213 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311536 AgrOrtholog
BioCyc Gene G2FUF-32758 BioCyc
Ensembl Genes ENSRNOG00000013577 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000056169 ENTREZGENE
  ENSRNOT00000056169.4 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9103157 IMAGE-MGC_LOAD
InterPro ER_ret_rcpt UniProtKB/TrEMBL
KEGG Report rno:315131 UniProtKB/TrEMBL
MGC_CLONE MGC:187945 IMAGE-MGC_LOAD
NCBI Gene 315131 ENTREZGENE
PANTHER ER LUMEN PROTEIN-RETAINING RECEPTOR 3 UniProtKB/TrEMBL
  ER_ret_rcpt UniProtKB/TrEMBL
Pfam ER_lumen_recept UniProtKB/TrEMBL
PhenoGen Kdelr3 PhenoGen
PRINTS ERLUMENR UniProtKB/TrEMBL
PROSITE ER_LUMEN_RECEPTOR_1 UniProtKB/TrEMBL
  ER_LUMEN_RECEPTOR_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013577 RatGTEx
UniProt B1WC77 ENTREZGENE
  F1LPB5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B1WC77 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-16 Kdelr3  KDEL endoplasmic reticulum protein retention receptor 3  Kdelr3  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Kdelr3  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3   Kdelr3_predicted  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Kdelr3_predicted  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED