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Gene: Trim14 (tripartite motif-containing 14) Rattus norvegicus

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Symbol:

Trim14

Name:

tripartite motif-containing 14

RGD ID:

1311514

Description:

Predicted to enable transcription coactivator activity and ubiquitin protein ligase activity. Predicted to be involved in innate immune response and negative regulation of viral transcription. Predicted to act upstream of or within inflammatory response and protein K48-linked deubiquitination. Predicted to be active in cytoplasm. Orthologous to human TRIM14 (tripartite motif containing 14); INTERACTS WITH (+)-schisandrin B; 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC313236; tripartite motif protein 14; tripartite motif-containing protein 14

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TRIM14 (tripartite motif containing 14)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther
Mus musculus (house mouse):	Trim14 (tripartite motif-containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Trim14 (tripartite motif containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TRIM14 (tripartite motif containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TRIM14 (tripartite motif containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Trim14 (tripartite motif containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TRIM14 (tripartite motif containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TRIM14 (tripartite motif containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Trim14 (tripartite motif containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Trim14 (tripartite motif containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TRIM14 (tripartite motif containing 14)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Trim14 (tripartite motif-containing 14)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-18p12.4	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Danio rerio (zebrafish):	trim107 (tripartite motif containing 107)	Alliance	DIOPT (Ensembl Compara\|OMA)
Caenorhabditis elegans (roundworm):	B0281.8	Alliance	DIOPT (Ensembl Compara\|InParanoid)
Caenorhabditis elegans (roundworm):	ZK1240.5	Alliance	DIOPT (Ensembl Compara\|InParanoid)
Caenorhabditis elegans (roundworm):	ZK1240.9	Alliance	DIOPT (Ensembl Compara\|InParanoid)
Caenorhabditis elegans (roundworm):	nhl-3	Alliance	DIOPT (Ensembl Compara\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ZK1240.8	Alliance	DIOPT (Ensembl Compara\|InParanoid)
Caenorhabditis elegans (roundworm):	ZK1240.3	Alliance	DIOPT (Ensembl Compara\|InParanoid)
Xenopus tropicalis (tropical clawed frog):	trim14	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	65,596,149 - 65,620,434 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	65,596,149 - 65,620,434 (-)	Ensembl				GRCr8
mRatBN7.2	5	60,800,568 - 60,824,858 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	60,800,032 - 60,824,858 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	62,771,575 - 62,795,820 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	64,590,946 - 64,615,185 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	64,560,355 - 64,584,600 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	62,128,941 - 62,154,424 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	62,128,941 - 62,153,786 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	66,656,500 - 66,681,459 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	63,092,632 - 63,118,519 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	59,361,648 - 59,386,439 (-)	NCBI		Celera
RGSC_v3.1	5	63,095,090 - 63,119,006 (-)	NCBI
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

1,3-dinitrobenzene (EXP)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

DDE (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dimethyl sulfoxide (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

folic acid (ISO)

formaldehyde (ISO)

glafenine (EXP)

glycidol (EXP)

hydrogen peroxide (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (EXP,ISO)

menadione (ISO)

methapyrilene (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

methylseleninic acid (ISO)

nickel atom (ISO)

okadaic acid (ISO)

ozone (ISO)

panobinostat (ISO)

paracetamol (ISO)

parathion (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

potassium chromate (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

thimerosal (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

inflammatory response (IEA,ISO)

innate immune response (IBA,IEA,ISO)

negative regulation of viral transcription (IEA,ISO)

positive regulation of DNA-templated transcription (IEA)

Cellular Component

cytoplasm (IBA,IEA,ISO)

Molecular Function

metal ion binding (IEA)

molecular adaptor activity (IEA,ISO)

protein binding (ISO)

transcription coactivator activity (IEA,ISO)

ubiquitin protein ligase activity (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:11331580	PMID:12477932	PMID:16751776	PMID:16778019	PMID:18248090	PMID:23077300	PMID:33691569	PMID:37503784	PMID:37951197	PMID:38697463

Genomics

Comparative Map Data

Trim14
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	65,596,149 - 65,620,434 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	65,596,149 - 65,620,434 (-)	Ensembl				GRCr8
mRatBN7.2	5	60,800,568 - 60,824,858 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	60,800,032 - 60,824,858 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	62,771,575 - 62,795,820 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	64,590,946 - 64,615,185 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	64,560,355 - 64,584,600 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	62,128,941 - 62,154,424 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	62,128,941 - 62,153,786 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	66,656,500 - 66,681,459 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	63,092,632 - 63,118,519 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	59,361,648 - 59,386,439 (-)	NCBI		Celera
RGSC_v3.1	5	63,095,090 - 63,119,006 (-)	NCBI
Cytogenetic Map	5	q22	NCBI

TRIM14
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	98,035,797 - 98,119,222 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	98,068,968 - 98,119,399 (-)	Ensembl			hg38	GRCh38
GRCh37	9	100,846,635 - 100,881,504 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	99,871,384 - 99,921,309 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	9	71,345,840 - 71,395,772 (-)	NCBI		Celera
Cytogenetic Map	9	q22.33	NCBI
HuRef	9	70,431,697 - 70,481,629 (-)	NCBI		HuRef
CHM1_1	9	100,978,008 - 101,027,918 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	110,207,739 - 110,291,169 (-)	NCBI		T2T-CHM13v2.0

Trim14
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	46,505,072 - 46,536,148 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	46,493,781 - 46,536,141 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	46,505,072 - 46,536,150 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	46,493,781 - 46,536,141 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	46,519,719 - 46,549,016 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	46,527,947 - 46,566,186 (-)	NCBI		MGSCv36	mm8
Celera	4	46,532,071 - 46,554,775 (-)	NCBI		Celera
Cytogenetic Map	4	B1	NCBI
cM Map	4	24.84	NCBI

Trim14
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	27,390,173 - 27,419,681 (+)	Ensembl
ChiLan1.0	NW_004955419	27,390,098 - 27,420,727 (+)	NCBI	ChiLan1.0	ChiLan1.0

TRIM14
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	41,338,703 - 41,420,016 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	41,341,080 - 41,422,385 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	69,176,088 - 69,209,574 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	97,294,407 - 97,330,059 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	97,294,407 - 97,330,059 (-)	Ensembl			panPan2	panpan1.1

TRIM14
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	55,313,700 - 55,343,217 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	55,316,111 - 55,343,287 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	53,747,227 - 53,776,694 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	56,425,718 - 56,455,169 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	56,425,718 - 56,455,188 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	54,921,547 - 54,950,953 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	54,952,228 - 54,981,609 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	55,648,636 - 55,681,877 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Trim14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	170,245,978 - 170,269,447 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	6,797,762 - 6,816,607 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	6,797,788 - 6,816,582 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRIM14
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	239,912,126 - 239,945,073 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	239,912,126 - 239,945,082 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	268,085,336 - 268,115,179 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRIM14
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	41,303,240 - 41,359,509 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	41,303,404 - 41,335,492 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	38,338,418 - 38,399,400 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trim14
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624825	2,749,863 - 2,768,700 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624825	2,749,911 - 2,767,737 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Trim14
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	99,593,582 - 99,617,177 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Trim14
280 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	483
Count of miRNA genes:	243
Interacting mature miRNAs:	295
Transcripts:	ENSRNOT00000066001
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	32751649	77751649	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	38011670	83011670	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	52665372	94894052	Rat
6907115	Mcs29	Mammary carcinoma susceptibility QTL 29			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	38004331	83004331	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	23671493	79046465	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	65089051	103648916	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	38011670	83011670	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	38011670	83011670	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
1331782	Rf36	Renal function QTL 36	3.296		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	39019942	102105896	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	33311673	78311673	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	32751649	77751649	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	39985948	84985948	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33311673	78311673	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	39526924	84526924	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	48523123	91770353	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	60511627	105511627	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	64589016	109589016	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	26023211	71023211	Rat
2316954	Rf57	Renal function QTL 57	0		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	64589016	93503770	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	56546393	101546393	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	23671493	68671493	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	64589016	91762830	Rat

Markers in Region

RH128997

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	60,825,726 - 60,825,908 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	62,154,631 - 62,154,812	NCBI	Rnor6.0
Rnor_5.0	5	66,682,310 - 66,682,491	UniSTS	Rnor5.0
RGSC_v3.4	5	63,119,388 - 63,119,569	UniSTS	RGSC3.4
Celera	5	59,387,308 - 59,387,489	UniSTS
RH 3.4 Map	5	384.5	UniSTS
Cytogenetic Map	5	q22	UniSTS

RH137252

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	60,800,649 - 60,800,831 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	62,129,559 - 62,129,740	NCBI	Rnor6.0
Rnor_5.0	5	66,657,118 - 66,657,299	UniSTS	Rnor5.0
RGSC_v3.4	5	63,093,250 - 63,093,431	UniSTS	RGSC3.4
Celera	5	59,362,266 - 59,362,447	UniSTS
RH 3.4 Map	5	382.3	UniSTS
Cytogenetic Map	5	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC097073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ613985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ619746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ623323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ627052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ732697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ741120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ754505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ760825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ766302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000066001 ⟹ ENSRNOP00000062845

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	60,800,032 - 60,824,858 (-)	Ensembl
Rnor_6.0 Ensembl	5	62,128,941 - 62,153,762 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000086962 ⟹ ENSRNOP00000072771

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	65,601,102 - 65,620,400 (-)	Ensembl
mRatBN7.2 Ensembl	5	60,805,523 - 60,824,824 (-)	Ensembl
Rnor_6.0 Ensembl	5	62,129,147 - 62,153,786 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107290 ⟹ ENSRNOP00000088241

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	65,596,149 - 65,620,426 (-)	Ensembl
mRatBN7.2 Ensembl	5	60,800,570 - 60,824,841 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000159497 ⟹ ENSRNOP00000111077

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	65,596,149 - 65,620,434 (-)	Ensembl

RefSeq Acc Id:

NM_001107934 ⟹ NP_001101404

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	65,596,149 - 65,620,434 (-)	NCBI
mRatBN7.2	5	60,800,568 - 60,824,858 (-)	NCBI
Rnor_6.0	5	62,128,941 - 62,153,762 (-)	NCBI
Rnor_5.0	5	66,656,500 - 66,681,459 (-)	NCBI
RGSC_v3.4	5	63,092,632 - 63,118,519 (-)	RGD
Celera	5	59,361,648 - 59,386,439 (-)	RGD

Sequence:

show sequence

CACACTGCACAGAGGACAGCGGATGCTAATGAAAAATGGCGAGCGGGACTGCCGAGGTGCGGGC
GCCCGTTCAGTCTGACTGGACGGGTGGCTGGCGCTGTCCGGAGCACAGCGAACGCCCGGCTGAG
CTCTTCTGTCGTCGCTGCAGCCGTTGTGTGTGTGCGCTCTGCCCGGTTCTGGGAGCGCACCGCG
GCCACCCGGTGGGCCTGGCCGAGGAGGAGGCTGCGCGCGCGCAGGTTTCTGCAGACTCAAGTAA
AGCCTGGCTAACACAGAAATTCACAGAACTCAGATTACTCCTTGATGAAGAGGAAGCACTGGCC
AAAAGCTTCATCGATAAAAACACACAGCTCACCCTCCAGGTGTACCAGGAGCAAGCCGAGTCTT
GCAGGAAGCAAATTGAGGTCATGAGTGACTTCTCTATCAGGGTGTGGGACATCAGCCAGGTGTC
CAACCCTGTTCAGCTGCTGCAGGCATATATAGCCACCAAGGCAGAGATGGGACAGCAGATGAGC
CCCTCGGAGCTGAGCCACCCTGTGCCCCTGTCTTTCGAGCCTGTCAAGAACTTCTTTAAGGAGT
TTGTGGAAGCCATCAGGAACACGTTACAGACACCAATGGACACTCGCCTGAAGGAAAACGCGCG
CACGCCAACGCTGGACCCGGACACGATGCACGCGCGCCTGCGCCTGTCGACCGACGGGCTGACT
GTACGCTGCTCGCTGCTGGGCCGCCTGGGGCCGCGTCCCGCTCCGCGATTCGACTCGCTGCGTC
AGGTGCTGGGCCGCGACGGCTTCGCAGCGGGACGCCACTACTGGGAGGTGGACGTGCAGGAGGC
AGGCGTGGGCTGGTGGGTGGGCGCGGCCTACCCGTCGCTGCGGCGCCGCGGAACCTCCACGGCT
GCCCGCCTAGGCTGCAACCGCGAGTCGTGGTGCGTGAAGCGTTACGACATGGAGTACTGGGCCT
TCCACGACTGCCAGCGAAGCCGTCTGCGGCTCCGCCGCGACCCTCACCGGCTCGGCGTCTTCCT
GGACTACGAGGCCGGCATTCTGACCTTCTACGACGTGGCGGGTGGCATGAGCCACTTGCATACC
TTCTATGCTGTCTTCCAGGAGCCGCTCTACCCAGCCCTGCGCCTCTGGGAGGGGACTATCAGCA
TTCCCCGGTTACCCTAAGAGAGAATGTGCTTCCTTTCCTAGGCTAGTCTCCTGCTGTCCCCTGT
GCCCTCCCCCTCTTCCCCCACGATGTTTTTATAATGCAAGTTCCTGAAAGGGACACCCTGCTGC
CTGTATCTAGGACACTATCGTGCAGCGCCTAGAACCTCCTGACACACAGTAGGCACGCAGTATC
AGTGAATACTTACAGTGCCTTGCAGGAGGCAAGTAGTTCCTGAACTGTTTCCATTTGAGCCAGC
TGCTCTCCAGCCACTTGAGCTTGTCCAGGTCACCTCCATCCAGAGCACCTGACAGGGTTCTGGT
CTGGGTCTGCATCCTCACCCCTCTTCATCTTCTACACTAAAGCATCCTGAAACTTAGCCTGGCC
TCTTGGGAACTAAAGGGAGGCTCTCAAAGAGCTACAAAAACAGCACTGGCAGCACTTTACCTTG
GCCCTTTTAGTAGTCTTTCTGGCTTTTCTACCCTGCCTTTGCTCATGTCAATCTTTTCAGACAT
GCTCCGGTCGGAAGCTAGTTTGCAGGTGCACCTTTGAACCATTGTGCTTCCCACCATAAATAGG
AAAACCGGCTCTCTGCCTGTCTCAGTCTTCAGGCTTATCTGCCCCAAGAAGTTCCCTCCACACC
CGAAAAAAAAAAAAACCAATCAGGCCTACAAATCCCTCCACCCCACCCCCTCAAAAACAAACAA
ACAAACAAACAGGACCTGTCATTCCAGTTGCTTTCTAAGGACATCTGTGTGCTTTCCTTCTAGA
CGCTGAGTGATCATTAGGGCAATTTGACGGGACATAGTAGGTCCTTCATTCACAAGACCAGAGC
TTTTCCCACACACCACTGCAGGAGGGGCCCAGCCAGGCACCTCTTACCAGGCATTGGAGTCATG
CACTTCACACAGTTGATCCCTCAAAGGTGGGAAGCGATCCCATTGTACACATGGCAGACTTGGT
ACTCGTGAGTCAGAAGACTGCCCCAAGACAATAGGATCAGTGTTGCGGTCAGGATCTACACTGC
CTAGTAGGCTGTGTTGTAGATGTGACAGCTCTCTCCCTCTCAGTGTTACTTGCCTCAGTTTTCC
CCGGGTCAAACCTGCTTTTAGATTTACCTTCACTGGTCCCTGAAATGAGGTTGTATAACCTTTA
GGATAGGGGATGGAATTGTTTGAGAGGATCTGATTTGGGTCTAAAACAGAAAGACTGATTCTGA
GCTGGGGTTTGTGCTGGCTAGAAGGCTTAGCTTCCGGTCAGCTGTATGGCCTCAGACAACATTC
TTTCTACTTGTGGCCCCCATCTGTAAAACATGGGTCGGTGATGCCAGGCTCAAACAAGCCAAAG
CTAATGAAATTGCCTTAAAAACTATAACGTATCAGGCTAGGATTTGTTAGCATCTCCAATAGAC
TCTTCCTACCTTGTCACAGTGCTGGACCGCAGATACCCAGCAGCTGGGTGGCAACCAAGGGAGC
TGCCTTAATATTCTCAGGGCAGTCTCCTTGTGATCCAAAGCATGTGTCTGAATGCTCTTGGTTT
TGTAGAATTTACCTCAGAGGTACACGAATTATTTTCCCTGTGATGCTTGTGGTGCGTGGTCTAG
AACCAGTGAAGGGCTCCATCCAGCTATACATACAGCCCCAGCAGGTGTTTGCAAGAAAAAGGCT
TAGTCAAGGCCAGTGAAGCAGAAGACATACATCTCTGTGATGACAGTTTTCTAATACATGCTTT
GTTTAAATAAAATATGAATGCTGTCTCTTGTAACCATGTTCTTCATTGGAAGTCAAGTGCATAG
TAGCATTTGGGCTTGGATAAAATCTTGTTCACCCGCCACCCCCTTCATAGCTTTCTTGAAATAG
CTGGTCCTAAAGTGAACAGGTCCAGTGATGGGGGGCTCACCACTCACGAAGATAACCAAGTTCT
TCTGTGGGGCAGGGAGACCCTAAGTACCATGAGGATGTCAGAGGATAACTGGTGGAAGTCAGTT
TTGTCCTTCCACGACAGGGTTGGAGGGTGTCCTAAGGATTTAACTTGGGTTGTCAAGATGGTGA
CACATCTACCTGCAGAGCCAACTCAGTGGCCTCAATTCTTCTGTGGAAGCAAACCCAACTCTCA
GTGGTTTGCAGAAGAAAAAAGGGAAGCAAAAAAAAAAGGTGGGGGGAGCACGTTTGTATTCAGC
CTTTAGCACCACAGAAGCTTCTTGTAGTCTCTAGCTTCTAGAGAATCCGGGGGCACTCTTATCT
ACAGTGTCATCTTTCTGCCCATAATTCTCCTTTGTCAGTGACACTAGCCTGTGGTAA

hide sequence

RefSeq Acc Id:

NM_001399174 ⟹ NP_001386103

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	65,596,149 - 65,620,426 (-)	NCBI
mRatBN7.2	5	60,800,568 - 60,824,850 (-)	NCBI

RefSeq Acc Id:

XM_006238061 ⟹ XP_006238123

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	65,596,149 - 65,620,147 (-)	NCBI
mRatBN7.2	5	60,800,568 - 60,824,571 (-)	NCBI
Rnor_6.0	5	62,129,477 - 62,153,520 (-)	NCBI
Rnor_5.0	5	66,656,500 - 66,681,459 (-)	NCBI

Sequence:

show sequence

AGCCGCGAGGGCGTGCACCGCAGGTCTGGGCGGGCGGAGATTGAGCACAGGAGTAACGGTCGAG
GGACCGCCAGCCCAGGTCTTACCGCCAAATCCTGTTAGGACCGGGAAACTTAAGAGGGCCCTGA
GGTCCCCTAGATAGTAGACGTAAGATCAGGAGACAGAACCATGTGGAAGTGCAAAGAAACTAAT
GCAGGAGTGTTTGGAGTGTTTGGCCACCAAGAAGAGGCAACATGCTGACAACATAGCCCAACTG
GAAGACACGGGGGAAAGGCTCAAGGTTTCTGCAGACTCAAGTAAAGCCTGGCTAACACAGAAAT
TCACAGAACTCAGATTACTCCTTGATGAAGAGGAAGCACTGGCCAAAAGCTTCATCGATAAAAA
CACACAGCTCACCCTCCAGGTGTACCAGGAGCAAGCCGAGTCTTGCAGGAAGCAAATTGAGGTC
ATGAGTGACTTCTCTATCAGGGTGTGGGACATCAGCCAGGTGTCCAACCCTGTTCAGCTGCTGC
AGGCATATATAGCCACCAAGGCAGAGATGGGACAGCAGATGAGCCCCTCGGAGCTGAGCCACCC
TGTGCCCCTGTCTTTCGAGCCTGTCAAGAACTTCTTTAAGGAGTTTGTGGAAGCCATCAGGAAC
ACGTTACAGACACCAATGGACACTCGCCTGAAGGAAAACATAAACTGCCAACTTTCAAGCTCCT
CCAGCACCAAGCCAGGCGCCTTGTTGAAAACCAGCCCCTCGCCAGAGAGAGCCCTCTTCTTGAA
ATACGCGCGCACGCCAACGCTGGACCCGGACACGATGCACGCGCGCCTGCGCCTGTCGACCGAC
GGGCTGACTGTACGCTGCTCGCTGCTGGGCCGCCTGGGGCCGCGTCCCGCTCCGCGATTCGACT
CGCTGCGTCAGGTGCTGGGCCGCGACGGCTTCGCAGCGGGACGCCACTACTGGGAGGTGGACGT
GCAGGAGGCAGGCGTGGGCTGGTGGGTGGGCGCGGCCTACCCGTCGCTGCGGCGCCGCGGAACC
TCCACGGCTGCCCGCCTAGGCTGCAACCGCGAGTCGTGGTGCGTGAAGCGTTACGACATGGAGT
ACTGGGCCTTCCACGACTGCCAGCGAAGCCGTCTGCGGCTCCGCCGCGACCCTCACCGGCTCGG
CGTCTTCCTGGACTACGAGGCCGGCATTCTGACCTTCTACGACGTGGCGGGTGGCATGAGCCAC
TTGCATACCTTCTATGCTGTCTTCCAGGAGCCGCTCTACCCAGCCCTGCGCCTCTGGGAGGGGA
CTATCAGCATTCCCCGGTTACCCTAAGAGAGAATGTGCTTCCTTTCCTAGGCTAGTCTCCTGCT
GTCCCCTGTGCCCTCCCCCTCTTCCCCCACGATGTTTTTATAATGCAAGTTCCTGAAAGGGACA
CCCTGCTGCCTGTATCTAGGACACTATCGTGCAGCGCCTAGAACCTCCTGACACACAGTAGGCA
CGCAGTATCAGTGAATACTTACAGTGCCTTGCAGGAGGCAAGTAGTTCCTGAACTGTTTCCATT
TGAGCCAGCTGCTCTCCAGCCACTTGAGCTTGTCCAGGTCACCTCCATCCAGAGCACCTGACAG
GGTTCTGGTCTGGGTCTGCATCCTCACCCCTCTTCATCTTCTACACTAAAGCATCCTGAAACTT
AGCCTGGCCTCTTGGGAACTAAAGGGAGGCTCTCAAAGAGCTACAAAAACAGCACTGGCAGCAC
TTTACCTTGGCCCTTTTAGTAGTCTTTCTGGCTTTTCTACCCTGCCTTTGCTCATGTCAATCTT
TTCAGACATGCTCCGGTCGGAAGCTAGTTTGCAGGTGCACCTTTGAACCATTGTGCTTCCCACC
ATAAATAGGAAAACCGGCTCTCTGCCTGTCTCAGTCTTCAGGCTTATCTGCCCCAAGAAGTTCC
CTCCACACCCGAAAAAAAAAAAAACCAATCAGGCCTACAAATCCCTCCACCCCACCCCCTCAAA
AACAAACAAACAAACAAACAGGACCTGTCATTCCAGTTGCTTTCTAAGGACATCTGTGTGCTTT
CCTTCTAGACGCTGAGTGATCATTAGGGCAATTTGACGGGACATAGTAGGTCCTTCATTCACAA
GACCAGAGCTTTTCCCACACACCACTGCAGGAGGGGCCCAGCCAGGCACCTCTTACCAGGCATT
GGAGTCATGCACTTCACACAGTTGATCCCTCAAAGGTGGGAAGCGATCCCATTGTACACATGGC
AGACTTGGTACTCGTGAGTCAGAAGACTGCCCCAAGACAATAGGATCAGTGTTGCGGTCAGGAT
CTACACTGCCTAGTAGGCTGTGTTGTAGATGTGACAGCTCTCTCCCTCTCAGTGTTACTTGCCT
CAGTTTTCCCCGGGTCAAACCTGCTTTTAGATTTACCTTCACTGGTCCCTGAAATGAGGTTGTA
TAACCTTTAGGATAGGGGATGGAATTGTTTGAGAGGATCTGATTTGGGTCTAAAACAGAAAGAC
TGATTCTGAGCTGGGGTTTGTGCTGGCTAGAAGGCTTAGCTTCCGGTCAGCTGTATGGCCTCAG
ACAACATTCTTTCTACTTGTGGCCCCCATCTGTAAAACATGGGTCGGTGATGCCAGGCTCAAAC
AAGCCAAAGCTAATGAAATTGCCTTAAAAACTATAACGTATCAGGCTAGGATTTGTTAGCATCT
CCAATAGACTCTTCCTACCTTGTCACAGTGCTGGACCGCAGATACCCAGCAGCTGGGTGGCAAC
CAAGGGAGCTGCCTTAATATTCTCAGGGCAGTCTCCTTGTGATCCAAAGCATGTGTCTGAATGC
TCTTGGTTTTGTAGAATTTACCTCAGAGGTACACGAATTATTTTCCCTGTGATGCTTGTGGTGC
GTGGTCTAGAACCAGTGAAGGGCTCCATCCAGCTATACATACAGCCCCAGCAGGTGTTTGCAAG
AAAAAGGCTTAGTCAAGGCCAGTGAAGCAGAAGACATACATCTCTGTGATGACAGTTTTCTAAT
ACATGCTTTGTTTAAATAAAATATGAATGCTGTCTCTTGTAA

hide sequence

RefSeq Acc Id:

XM_006238062 ⟹ XP_006238124

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	65,596,149 - 65,620,150 (-)	NCBI
mRatBN7.2	5	60,800,568 - 60,822,608 (-)	NCBI
Rnor_6.0	5	62,129,477 - 62,151,663 (-)	NCBI
Rnor_5.0	5	66,656,500 - 66,681,459 (-)	NCBI

Sequence:

show sequence

GCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTCCCCACCTGTTCTTATGAGTTAGACCC
GGGTGCAAAGCGGAAGACCAGCTTTAGAGAAGGCTAAGGTGGAGGATGGCTACCCTTGGAGGGA
AAAGATCCGAAACAGGTATTCAGAAAAATAGCTGCTTCTAAAAGCAGACATCCAGAAATAGGAG
ACAGGCATCCAGGCTGGGGGCATCCCCGACAAAGGCTTGAAGCTCAGAGAACCAGAGTCTCTGC
TCACCCTGCACCTCACCGCATGACTTTGGGCAAACTACCGACAGCGGAAACTAATGCAGGAGTG
TTTGGAGTGTTTGGCCACCAAGAAGAGGCAACATGCTGACAACATAGCCCAACTGGAAGACACG
GGGGAAAGGCTCAAGGTTTCTGCAGACTCAAGTAAAGCCTGGCTAACACAGAAATTCACAGAAC
TCAGATTACTCCTTGATGAAGAGGAAGCACTGGCCAAAAGCTTCATCGATAAAAACACACAGCT
CACCCTCCAGGTGTACCAGGAGCAAGCCGAGTCTTGCAGGAAGCAAATTGAGGTCATGAGTGAC
TTCTCTATCAGGGTGTGGGACATCAGCCAGGTGTCCAACCCTGTTCAGCTGCTGCAGGCATATA
TAGCCACCAAGGCAGAGATGGGACAGCAGATGAGCCCCTCGGAGCTGAGCCACCCTGTGCCCCT
GTCTTTCGAGCCTGTCAAGAACTTCTTTAAGGAGTTTGTGGAAGCCATCAGGAACACGTTACAG
ACACCAATGGACACTCGCCTGAAGGAAAACATAAACTGCCAACTTTCAAGCTCCTCCAGCACCA
AGCCAGGCGCCTTGTTGAAAACCAGCCCCTCGCCAGAGAGAGCCCTCTTCTTGAAATACGCGCG
CACGCCAACGCTGGACCCGGACACGATGCACGCGCGCCTGCGCCTGTCGACCGACGGGCTGACT
GTACGCTGCTCGCTGCTGGGCCGCCTGGGGCCGCGTCCCGCTCCGCGATTCGACTCGCTGCGTC
AGGTGCTGGGCCGCGACGGCTTCGCAGCGGGACGCCACTACTGGGAGGTGGACGTGCAGGAGGC
AGGCGTGGGCTGGTGGGTGGGCGCGGCCTACCCGTCGCTGCGGCGCCGCGGAACCTCCACGGCT
GCCCGCCTAGGCTGCAACCGCGAGTCGTGGTGCGTGAAGCGTTACGACATGGAGTACTGGGCCT
TCCACGACTGCCAGCGAAGCCGTCTGCGGCTCCGCCGCGACCCTCACCGGCTCGGCGTCTTCCT
GGACTACGAGGCCGGCATTCTGACCTTCTACGACGTGGCGGGTGGCATGAGCCACTTGCATACC
TTCTATGCTGTCTTCCAGGAGCCGCTCTACCCAGCCCTGCGCCTCTGGGAGGGGACTATCAGCA
TTCCCCGGTTACCCTAAGAGAGAATGTGCTTCCTTTCCTAGGCTAGTCTCCTGCTGTCCCCTGT
GCCCTCCCCCTCTTCCCCCACGATGTTTTTATAATGCAAGTTCCTGAAAGGGACACCCTGCTGC
CTGTATCTAGGACACTATCGTGCAGCGCCTAGAACCTCCTGACACACAGTAGGCACGCAGTATC
AGTGAATACTTACAGTGCCTTGCAGGAGGCAAGTAGTTCCTGAACTGTTTCCATTTGAGCCAGC
TGCTCTCCAGCCACTTGAGCTTGTCCAGGTCACCTCCATCCAGAGCACCTGACAGGGTTCTGGT
CTGGGTCTGCATCCTCACCCCTCTTCATCTTCTACACTAAAGCATCCTGAAACTTAGCCTGGCC
TCTTGGGAACTAAAGGGAGGCTCTCAAAGAGCTACAAAAACAGCACTGGCAGCACTTTACCTTG
GCCCTTTTAGTAGTCTTTCTGGCTTTTCTACCCTGCCTTTGCTCATGTCAATCTTTTCAGACAT
GCTCCGGTCGGAAGCTAGTTTGCAGGTGCACCTTTGAACCATTGTGCTTCCCACCATAAATAGG
AAAACCGGCTCTCTGCCTGTCTCAGTCTTCAGGCTTATCTGCCCCAAGAAGTTCCCTCCACACC
CGAAAAAAAAAAAAACCAATCAGGCCTACAAATCCCTCCACCCCACCCCCTCAAAAACAAACAA
ACAAACAAACAGGACCTGTCATTCCAGTTGCTTTCTAAGGACATCTGTGTGCTTTCCTTCTAGA
CGCTGAGTGATCATTAGGGCAATTTGACGGGACATAGTAGGTCCTTCATTCACAAGACCAGAGC
TTTTCCCACACACCACTGCAGGAGGGGCCCAGCCAGGCACCTCTTACCAGGCATTGGAGTCATG
CACTTCACACAGTTGATCCCTCAAAGGTGGGAAGCGATCCCATTGTACACATGGCAGACTTGGT
ACTCGTGAGTCAGAAGACTGCCCCAAGACAATAGGATCAGTGTTGCGGTCAGGATCTACACTGC
CTAGTAGGCTGTGTTGTAGATGTGACAGCTCTCTCCCTCTCAGTGTTACTTGCCTCAGTTTTCC
CCGGGTCAAACCTGCTTTTAGATTTACCTTCACTGGTCCCTGAAATGAGGTTGTATAACCTTTA
GGATAGGGGATGGAATTGTTTGAGAGGATCTGATTTGGGTCTAAAACAGAAAGACTGATTCTGA
GCTGGGGTTTGTGCTGGCTAGAAGGCTTAGCTTCCGGTCAGCTGTATGGCCTCAGACAACATTC
TTTCTACTTGTGGCCCCCATCTGTAAAACATGGGTCGGTGATGCCAGGCTCAAACAAGCCAAAG
CTAATGAAATTGCCTTAAAAACTATAACGTATCAGGCTAGGATTTGTTAGCATCTCCAATAGAC
TCTTCCTACCTTGTCACAGTGCTGGACCGCAGATACCCAGCAGCTGGGTGGCAACCAAGGGAGC
TGCCTTAATATTCTCAGGGCAGTCTCCTTGTGATCCAAAGCATGTGTCTGAATGCTCTTGGTTT
TGTAGAATTTACCTCAGAGGTACACGAATTATTTTCCCTGTGATGCTTGTGGTGCGTGGTCTAG
AACCAGTGAAGGGCTCCATCCAGCTATACATACAGCCCCAGCAGGTGTTTGCAAGAAAAAGGCT
TAGTCAAGGCCAGTGAAGCAGAAGACATACATCTCTGTGATGACAGTTTTCTAATACATGCTTT
GTTTAAATAAAATATGAATGCTGTCTCTTGTAA

hide sequence

RefSeq Acc Id:

XM_039109868 ⟹ XP_038965796

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	65,596,149 - 65,616,419 (-)	NCBI
mRatBN7.2	5	60,800,568 - 60,820,673 (-)	NCBI

RefSeq Acc Id:

XM_039109869 ⟹ XP_038965797

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	65,596,149 - 65,608,526 (-)	NCBI
mRatBN7.2	5	60,800,568 - 60,812,950 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101404	(Get FASTA)	NCBI Sequence Viewer
	NP_001386103	(Get FASTA)	NCBI Sequence Viewer
	XP_006238123	(Get FASTA)	NCBI Sequence Viewer
	XP_006238124	(Get FASTA)	NCBI Sequence Viewer
	XP_038965796	(Get FASTA)	NCBI Sequence Viewer
	XP_038965797	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66777	(Get FASTA)	NCBI Sequence Viewer
	EDL98844	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000072771.2
	ENSRNOP00000088241
	ENSRNOP00000088241.1
	ENSRNOP00000111077
	ENSRNOP00000111077.1

RefSeq Acc Id:	NP_001101404 ⟸ NM_001107934
- Peptide Label:	isoform 2
- UniProtKB:	D3ZBI1 (UniProtKB/TrEMBL), A6IJC4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASGTAEVRAPVQSDWTGGWRCPEHSERPAELFCRRCSRCVCALCPVLGAHRGHPVGLAEEEAA RAQVSADSSKAWLTQKFTELRLLLDEEEALAKSFIDKNTQLTLQVYQEQAESCRKQIEVMSDFS IRVWDISQVSNPVQLLQAYIATKAEMGQQMSPSELSHPVPLSFEPVKNFFKEFVEAIRNTLQTP MDTRLKENARTPTLDPDTMHARLRLSTDGLTVRCSLLGRLGPRPAPRFDSLRQVLGRDGFAAGR HYWEVDVQEAGVGWWVGAAYPSLRRRGTSTAARLGCNRESWCVKRYDMEYWAFHDCQRSRLRLR RDPHRLGVFLDYEAGILTFYDVAGGMSHLHTFYAVFQEPLYPALRLWEGTISIPRLP hide sequence

RefSeq Acc Id:

XP_006238123 ⟸ XM_006238061

- Peptide Label:

isoform X1

- Sequence:

show sequence

MQECLECLATKKRQHADNIAQLEDTGERLKVSADSSKAWLTQKFTELRLLLDEEEALAKSFIDK
NTQLTLQVYQEQAESCRKQIEVMSDFSIRVWDISQVSNPVQLLQAYIATKAEMGQQMSPSELSH
PVPLSFEPVKNFFKEFVEAIRNTLQTPMDTRLKENINCQLSSSSSTKPGALLKTSPSPERALFL
KYARTPTLDPDTMHARLRLSTDGLTVRCSLLGRLGPRPAPRFDSLRQVLGRDGFAAGRHYWEVD
VQEAGVGWWVGAAYPSLRRRGTSTAARLGCNRESWCVKRYDMEYWAFHDCQRSRLRLRRDPHRL
GVFLDYEAGILTFYDVAGGMSHLHTFYAVFQEPLYPALRLWEGTISIPRLP

hide sequence

RefSeq Acc Id:

XP_006238124 ⟸ XM_006238062

- Peptide Label:

isoform X1

- Sequence:

show sequence

MQECLECLATKKRQHADNIAQLEDTGERLKVSADSSKAWLTQKFTELRLLLDEEEALAKSFIDK
NTQLTLQVYQEQAESCRKQIEVMSDFSIRVWDISQVSNPVQLLQAYIATKAEMGQQMSPSELSH
PVPLSFEPVKNFFKEFVEAIRNTLQTPMDTRLKENINCQLSSSSSTKPGALLKTSPSPERALFL
KYARTPTLDPDTMHARLRLSTDGLTVRCSLLGRLGPRPAPRFDSLRQVLGRDGFAAGRHYWEVD
VQEAGVGWWVGAAYPSLRRRGTSTAARLGCNRESWCVKRYDMEYWAFHDCQRSRLRLRRDPHRL
GVFLDYEAGILTFYDVAGGMSHLHTFYAVFQEPLYPALRLWEGTISIPRLP

hide sequence

Ensembl Acc Id:

ENSRNOP00000062845 ⟸ ENSRNOT00000066001

Ensembl Acc Id:

ENSRNOP00000072771 ⟸ ENSRNOT00000086962

RefSeq Acc Id:	XP_038965796 ⟸ XM_039109868
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038965797 ⟸ XM_039109869
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000088241 ⟸ ENSRNOT00000107290

RefSeq Acc Id:	NP_001386103 ⟸ NM_001399174
- Peptide Label:	isoform 1
- UniProtKB:	B2RYH2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000111077 ⟸ ENSRNOT00000159497

Protein Domains

B box-type B30.2/SPRY

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2RYH2-F1-model_v2	AlphaFold	B2RYH2	1-440	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693715

Promoter ID:

EPDNEW_R4239

Type:

multiple initiation site

Name:

Trim14_1

Description:

tripartite motif-containing 14

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	62,153,754 - 62,153,814	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311514	AgrOrtholog
BioCyc Gene	G2FUF-41403	BioCyc
Ensembl Genes	ENSRNOG00000008922	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000086962.3	UniProtKB/TrEMBL
	ENSRNOT00000107290	ENTREZGENE
	ENSRNOT00000107290.2	UniProtKB/TrEMBL
	ENSRNOT00000159497	ENTREZGENE
	ENSRNOT00000159497.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.920	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7934596	IMAGE-MGC_LOAD
InterPro	B30.2/SPRY_sf	UniProtKB/TrEMBL
	B302	UniProtKB/TrEMBL
	Butyrophylin	UniProtKB/TrEMBL
	ConA-like_dom	UniProtKB/TrEMBL
	E3_ubiq-ligase_TRIM/RNF	UniProtKB/TrEMBL
	PRY	UniProtKB/TrEMBL
	SPRY_PRY_TRIM14	UniProtKB/TrEMBL
	SPRY_rcpt	UniProtKB/TrEMBL
	Znf_B-box	UniProtKB/TrEMBL
KEGG Report	rno:313236	UniProtKB/TrEMBL
MGC_CLONE	MGC:188556	IMAGE-MGC_LOAD
NCBI Gene	313236	ENTREZGENE
PANTHER	B BOX-TYPE DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	B-BOX DOMAIN CONTAINING	UniProtKB/TrEMBL
Pfam	PRY	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
	TRIM_CC	UniProtKB/TrEMBL
	zf-B_box	UniProtKB/TrEMBL
PhenoGen	Trim14	PhenoGen
PRINTS	BUTYPHLNCDUF	UniProtKB/TrEMBL
PROSITE	B302_SPRY	UniProtKB/TrEMBL
	ZF_BBOX	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008922	RatGTEx
SMART	BBOX	UniProtKB/TrEMBL
	PRY	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
Superfamily-SCOP	B-box zinc-binding domain	UniProtKB/TrEMBL
	ConA_like_lec_gl	UniProtKB/TrEMBL
UniProt	A0A0G2K3T6_RAT	UniProtKB/TrEMBL
	A0ABK0LXB1_RAT	UniProtKB/TrEMBL
	A6IJC4	ENTREZGENE, UniProtKB/TrEMBL
	B2RYH2	ENTREZGENE, UniProtKB/TrEMBL
	D3ZBI1	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-05-01	Trim14	tripartite motif-containing 14	Trim14	tripartite motif protein 14	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Trim14	tripartite motif protein 14	Trim14_predicted	tripartite motif protein 14 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Trim14_predicted	tripartite motif protein 14 (predicted)		tripartite motif-containing 14 (predicted)	Name updated	1299863	APPROVED
2005-01-12	Trim14_predicted	tripartite motif-containing 14 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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