Mmrn2 (multimerin 2) - Rat Genome Database

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Gene: Mmrn2 (multimerin 2) Rattus norvegicus
Analyze
Symbol: Mmrn2
Name: multimerin 2
RGD ID: 1311461
Description: Predicted to enable receptor ligand activity. Predicted to be involved in several processes, including cell migration involved in sprouting angiogenesis; negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis; and negative regulation of cell migration involved in sprouting angiogenesis. Predicted to act upstream of or within angiogenesis. Predicted to be located in basement membrane and extracellular space. Orthologous to human MMRN2 (multimerin 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC306288; multimerin-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8169,712,181 - 9,733,653 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl169,711,953 - 9,733,653 (+)EnsemblGRCr8
mRatBN7.2169,705,925 - 9,727,405 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,705,892 - 9,727,405 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx169,726,090 - 9,747,526 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01610,870,804 - 10,892,240 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0169,721,171 - 9,742,604 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01610,727,552 - 10,749,303 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1610,727,571 - 10,749,382 (+)Ensemblrn6Rnor6.0
Rnor_5.0169,055,337 - 9,075,346 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41610,031,365 - 10,052,169 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera165,489,507 - 5,510,959 (-)NCBICelera
RGSC_v3.11610,031,524 - 10,051,725 (+)NCBI
Cytogenetic Map16p15NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11559704   PMID:18757743   PMID:19056867   PMID:22020326   PMID:23376485   PMID:23533145   PMID:23979707   PMID:25745997  


Genomics

Comparative Map Data
Mmrn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8169,712,181 - 9,733,653 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl169,711,953 - 9,733,653 (+)EnsemblGRCr8
mRatBN7.2169,705,925 - 9,727,405 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,705,892 - 9,727,405 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx169,726,090 - 9,747,526 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01610,870,804 - 10,892,240 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0169,721,171 - 9,742,604 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01610,727,552 - 10,749,303 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1610,727,571 - 10,749,382 (+)Ensemblrn6Rnor6.0
Rnor_5.0169,055,337 - 9,075,346 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41610,031,365 - 10,052,169 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera165,489,507 - 5,510,959 (-)NCBICelera
RGSC_v3.11610,031,524 - 10,051,725 (+)NCBI
Cytogenetic Map16p15NCBI
MMRN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381086,935,540 - 86,957,615 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1086,935,540 - 86,969,481 (-)Ensemblhg38GRCh38
GRCh371088,695,297 - 88,717,372 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361088,685,576 - 88,707,352 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341088,685,575 - 88,707,352NCBI
Celera1082,698,335 - 82,720,425 (-)NCBICelera
Cytogenetic Map10q23.2NCBI
HuRef1082,549,122 - 82,571,213 (-)NCBIHuRef
CHM1_11088,977,037 - 88,999,158 (-)NCBICHM1_1
T2T-CHM13v2.01087,819,295 - 87,841,328 (-)NCBIT2T-CHM13v2.0
Mmrn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391434,097,461 - 34,126,244 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1434,097,422 - 34,126,244 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381434,375,504 - 34,404,287 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1434,375,465 - 34,404,287 (+)Ensemblmm10GRCm38
MGSCv371435,188,690 - 35,217,473 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361433,204,621 - 33,232,834 (+)NCBIMGSCv36mm8
Celera1430,641,747 - 30,669,702 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.81NCBI
Mmrn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555105,945,043 - 5,958,352 (-)Ensembl
ChiLan1.0NW_0049555105,943,126 - 5,957,679 (-)NCBIChiLan1.0ChiLan1.0
MMRN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2898,930,555 - 98,966,505 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11098,935,874 - 98,971,822 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01083,363,696 - 83,396,966 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11086,920,521 - 86,956,333 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1086,920,521 - 86,942,777 (-)EnsemblpanPan2panpan1.1
MMRN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1434,577,072 - 34,604,521 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl434,589,597 - 34,605,576 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha434,580,472 - 34,595,946 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0434,949,417 - 34,964,896 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl434,950,035 - 34,964,843 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1434,795,071 - 34,810,534 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0434,964,039 - 34,979,464 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0435,469,876 - 35,485,332 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mmrn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721343,912,229 - 43,930,881 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493680422,533 - 39,540 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493680422,609 - 39,974 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MMRN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1487,896,074 - 87,916,342 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11487,891,585 - 87,916,327 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21495,292,539 - 95,308,417 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MMRN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1944,913,403 - 44,934,430 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl944,913,455 - 44,935,112 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660485,020,595 - 5,042,314 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mmrn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624841197,547 - 210,132 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624841196,708 - 212,499 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mmrn2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11310,147,626 - 10,169,968 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mmrn2
94 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:138
Count of miRNA genes:101
Interacting mature miRNAs:119
Transcripts:ENSRNOT00000014193
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16423421216278352Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1638712345387123Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133425095Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139568015Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16423421253708481Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16474422249744222Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16423421216278352Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16126734272Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126734272Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16435482249354822Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)1638712345387123Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16423421249757901Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421216061395Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139568015Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338679049757901Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338679026128267Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126734272Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16423433317730812Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683908652786090Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16330168348301683Rat

Markers in Region
RH128709  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2169,727,209 - 9,727,399 (+)MAPPERmRatBN7.2
Rnor_6.01610,749,112 - 10,749,301NCBIRnor6.0
Rnor_5.0169,075,155 - 9,075,344UniSTSRnor5.0
RGSC_v3.41610,052,529 - 10,052,718UniSTSRGSC3.4
Celera165,489,509 - 5,489,698UniSTS
RH 3.4 Map1695.6UniSTS
Cytogenetic Map16p16UniSTS
RH137519  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2169,726,681 - 9,726,849 (+)MAPPERmRatBN7.2
Rnor_6.01610,748,584 - 10,748,751NCBIRnor6.0
Rnor_5.0169,074,627 - 9,074,794UniSTSRnor5.0
RGSC_v3.41610,052,001 - 10,052,168UniSTSRGSC3.4
Celera165,490,059 - 5,490,226UniSTS
Cytogenetic Map16p16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 85 59 6 349 185 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000084422   ⟹   ENSRNOP00000074627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl169,711,953 - 9,733,653 (+)Ensembl
mRatBN7.2 Ensembl169,705,892 - 9,727,405 (+)Ensembl
Rnor_6.0 Ensembl1610,727,571 - 10,749,382 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110870   ⟹   ENSRNOP00000089998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl169,712,067 - 9,733,653 (+)Ensembl
mRatBN7.2 Ensembl169,705,953 - 9,727,405 (+)Ensembl
RefSeq Acc Id: NM_001372014   ⟹   NP_001358943
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8169,712,205 - 9,733,653 (+)NCBI
mRatBN7.2169,705,953 - 9,727,405 (+)NCBI
RefSeq Acc Id: XM_039094475   ⟹   XP_038950403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8169,712,181 - 9,733,649 (+)NCBI
mRatBN7.2169,705,925 - 9,727,401 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001358943 (Get FASTA)   NCBI Sequence Viewer  
  XP_038950403 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL88874 (Get FASTA)   NCBI Sequence Viewer  
  EDL88875 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000074627
  ENSRNOP00000074627.2
  ENSRNOP00000089998
  ENSRNOP00000089998.2
Ensembl Acc Id: ENSRNOP00000074627   ⟸   ENSRNOT00000084422
RefSeq Acc Id: XP_038950403   ⟸   XM_039094475
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GHU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001358943   ⟸   NM_001372014
- Peptide Label: precursor
- UniProtKB: A0A8I6GHU7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000089998   ⟸   ENSRNOT00000110870
Protein Domains
C1q   EMI

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ABX6-F1-model_v2 AlphaFold D4ABX6 1-933 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699962
Promoter ID:EPDNEW_R10483
Type:initiation region
Name:Mmrn2_1
Description:multimerin 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01610,727,568 - 10,727,628EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311461 AgrOrtholog
BioCyc Gene G2FUF-12061 BioCyc
Ensembl Genes ENSRNOG00000051977 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084422 ENTREZGENE
  ENSRNOT00000084422.3 UniProtKB/TrEMBL
  ENSRNOT00000110870 ENTREZGENE
  ENSRNOT00000110870.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro C1q UniProtKB/TrEMBL
  Collagen/C1q_domain UniProtKB/TrEMBL
  EMI_domain UniProtKB/TrEMBL
  Tumour_necrosis_fac-like UniProtKB/TrEMBL
NCBI Gene 306288 ENTREZGENE
PANTHER EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER UniProtKB/TrEMBL
  MULTIMERIN-2 UniProtKB/TrEMBL
Pfam C1q UniProtKB/TrEMBL
  EMI UniProtKB/TrEMBL
PhenoGen Mmrn2 PhenoGen
PROSITE C1Q UniProtKB/TrEMBL
  EMI UniProtKB/TrEMBL
RatGTEx ENSRNOG00000051977 RatGTEx
SMART C1Q UniProtKB/TrEMBL
Superfamily-SCOP TNF_like UniProtKB/TrEMBL
UniProt A0A8I6GHU7 ENTREZGENE, UniProtKB/TrEMBL
  D4ABX6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Mmrn2  multimerin 2   Mmrn2_predicted  multimerin 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mmrn2_predicted  multimerin 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED