MMRN2 (multimerin 2) - Rat Genome Database

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Gene: MMRN2 (multimerin 2) Sus scrofa
Analyze
Symbol: MMRN2
Name: multimerin 2
RGD ID: 13860125
Description: ENCODES a protein that exhibits receptor ligand activity (inferred); INVOLVED IN angiogenesis (inferred); cell migration involved in sprouting angiogenesis (inferred); negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis (inferred); ASSOCIATED WITH juvenile polyposis syndrome (ortholog); PTEN hamartoma tumor syndrome (ortholog); FOUND IN collagen-containing extracellular matrix (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: multimerin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1487,896,074 - 87,916,342 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11487,891,585 - 87,916,327 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21495,292,539 - 95,308,417 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MMRN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1487,896,074 - 87,916,342 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11487,891,585 - 87,916,327 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21495,292,539 - 95,308,417 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MMRN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381086,935,540 - 86,957,615 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1086,935,540 - 86,969,481 (-)EnsemblGRCh38hg38GRCh38
GRCh371088,695,297 - 88,717,372 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361088,685,576 - 88,707,352 (-)NCBINCBI36Build 36hg18NCBI36
Build 341088,685,575 - 88,707,352NCBI
Celera1082,698,335 - 82,720,425 (-)NCBICelera
Cytogenetic Map10q23.2NCBI
HuRef1082,549,122 - 82,571,213 (-)NCBIHuRef
CHM1_11088,977,037 - 88,999,158 (-)NCBICHM1_1
T2T-CHM13v2.01087,819,295 - 87,841,328 (-)NCBIT2T-CHM13v2.0
Mmrn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391434,097,461 - 34,126,244 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1434,097,422 - 34,126,244 (+)EnsemblGRCm39 Ensembl
GRCm381434,375,504 - 34,404,287 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1434,375,465 - 34,404,287 (+)EnsemblGRCm38mm10GRCm38
MGSCv371435,188,690 - 35,217,473 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361433,204,621 - 33,232,834 (+)NCBIMGSCv36mm8
Celera1430,641,747 - 30,669,702 (+)NCBICelera
Cytogenetic Map14BNCBI
cM Map1420.81NCBI
Mmrn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8169,712,181 - 9,733,653 (+)NCBIGRCr8
mRatBN7.2169,705,925 - 9,727,405 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,705,892 - 9,727,405 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx169,726,090 - 9,747,526 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01610,870,804 - 10,892,240 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0169,721,171 - 9,742,604 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01610,727,552 - 10,749,303 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1610,727,571 - 10,749,382 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0169,055,337 - 9,075,346 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41610,031,365 - 10,052,169 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11610,031,524 - 10,051,725 (+)NCBI
Celera165,489,507 - 5,510,959 (-)NCBICelera
Cytogenetic Map16p15NCBI
Mmrn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555105,945,043 - 5,958,352 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555105,943,126 - 5,957,679 (-)NCBIChiLan1.0ChiLan1.0
MMRN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2898,930,555 - 98,966,505 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11098,935,874 - 98,971,822 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01083,363,696 - 83,396,966 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11086,920,521 - 86,956,333 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1086,920,521 - 86,942,777 (-)Ensemblpanpan1.1panPan2
MMRN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1434,577,072 - 34,604,521 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl434,589,597 - 34,605,576 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha434,580,472 - 34,595,946 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0434,949,417 - 34,964,896 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl434,950,035 - 34,964,843 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1434,795,071 - 34,810,534 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0434,964,039 - 34,979,464 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0435,469,876 - 35,485,332 (-)NCBIUU_Cfam_GSD_1.0
Mmrn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721343,912,229 - 43,930,881 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493680422,533 - 39,540 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493680422,609 - 39,974 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MMRN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1944,913,403 - 44,934,430 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl944,913,455 - 44,935,112 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660485,020,595 - 5,042,314 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mmrn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624841197,547 - 210,132 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624841196,708 - 212,499 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MMRN2
369 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 5 14 12 23 3 6 1

Sequence


Ensembl Acc Id: ENSSSCT00000011345   ⟹   ENSSSCP00000011051
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1487,896,074 - 87,916,342 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000011346   ⟹   ENSSSCP00000011052
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1487,896,074 - 87,916,342 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000043319   ⟹   ENSSSCP00000053328
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1487,896,074 - 87,908,225 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000081699   ⟹   ENSSSCP00000060259
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1487,896,074 - 87,916,342 (-)Ensembl
RefSeq Acc Id: XM_005671182   ⟹   XP_005671239
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11487,891,585 - 87,916,327 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005671239 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000011051.4
  ENSSSCP00000011052.4
  ENSSSCP00000053328.3
  ENSSSCP00000060259
  ENSSSCP00000060259.1
  ENSSSCP00025013735.1
  ENSSSCP00035033452.1
  ENSSSCP00055042697.1
RefSeq Acc Id: XP_005671239   ⟸   XM_005671182
- UniProtKB: A0A5G2Q7Y9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000011051   ⟸   ENSSSCT00000011345
Ensembl Acc Id: ENSSSCP00000011052   ⟸   ENSSSCT00000011346
Ensembl Acc Id: ENSSSCP00000060259   ⟸   ENSSSCT00000081699
Ensembl Acc Id: ENSSSCP00000053328   ⟸   ENSSSCT00000043319
Protein Domains
C1q   EMI


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000024048 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025024278 UniProtKB/TrEMBL
  ENSSSCG00035060366 UniProtKB/TrEMBL
  ENSSSCG00055027019 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011345.5 UniProtKB/TrEMBL
  ENSSSCT00000011346.5 UniProtKB/TrEMBL
  ENSSSCT00000043319.3 UniProtKB/TrEMBL
  ENSSSCT00000081699 ENTREZGENE
  ENSSSCT00000081699.2 UniProtKB/TrEMBL
  ENSSSCT00025032915.1 UniProtKB/TrEMBL
  ENSSSCT00035081003.1 UniProtKB/TrEMBL
  ENSSSCT00055053523.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro C1q_dom UniProtKB/TrEMBL
  Collagen/C1q_domain UniProtKB/TrEMBL
  EMI_domain UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/TrEMBL
KEGG Report ssc:100155963 UniProtKB/TrEMBL
NCBI Gene MMRN2 ENTREZGENE
PANTHER EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER UniProtKB/TrEMBL
  MULTIMERIN-2 UniProtKB/TrEMBL
Pfam C1q UniProtKB/TrEMBL
  EMI UniProtKB/TrEMBL
PRINTS COMPLEMNTC1Q UniProtKB/TrEMBL
PROSITE C1Q UniProtKB/TrEMBL
  EMI UniProtKB/TrEMBL
SMART C1Q UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/TrEMBL
UniProt A0A287BB44_PIG UniProtKB/TrEMBL
  A0A480JZY3_PIG UniProtKB/TrEMBL
  A0A5G2Q7Y9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1AHX9_PIG UniProtKB/TrEMBL
  F1SEN5_PIG UniProtKB/TrEMBL
  F1SEN6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:90282 ENTREZGENE