Advanced Search (OLGA)

Gene: Dzip1l (DAZ interacting zinc finger protein 1-like) Rattus norvegicus

Analyze

Symbol:

Dzip1l

Name:

DAZ interacting zinc finger protein 1-like

RGD ID:

1311430

Description:

Predicted to enable zinc ion binding activity. Predicted to be involved in cilium assembly and regulation of protein localization. Predicted to act upstream of or within several processes, including ciliary transition zone assembly; neural tube development; and smoothened signaling pathway. Predicted to be located in axoneme and centriole. Predicted to be active in ciliary basal body and cytoplasm. Human ortholog(s) of this gene implicated in polycystic kidney disease 5. Orthologous to human DZIP1L (DAZ interacting zinc finger protein 1 like); INTERACTS WITH acetamide; acrylamide; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cilium assembly protein DZIP1L; DAZ interacting protein 1-like; DAZ-interacting protein 1-like protein; LOC315952; RGD1311430; similar to hypothetical protein FLJ32844; zinc finger protein DZIP1L

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DZIP1L (DAZ interacting zinc finger protein 1 like)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Dzip1l (DAZ interacting protein 1-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dzip1l (DAZ interacting zinc finger protein 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DZIP1L (DAZ interacting zinc finger protein 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DZIP1L (DAZ interacting zinc finger protein 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dzip1l (DAZ interacting zinc finger protein 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DZIP1L (DAZ interacting zinc finger protein 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DZIP1L (DAZ interacting zinc finger protein 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dzip1l (DAZ interacting zinc finger protein 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Dzip1l (DAZ interacting zinc finger protein 1 like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	DZIP1L (DAZ interacting zinc finger protein 1 like)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Dzip1l (DAZ interacting protein 1-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	dzip1l (DAZ interacting zinc finger protein 1-like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG13617	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG13617	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	dzip1l	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	dzip1l	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	109,067,466 - 109,108,390 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	109,067,775 - 109,108,393 (+)	Ensembl				GRCr8
mRatBN7.2	8	100,188,414 - 100,229,077 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	100,194,999 - 100,228,988 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	105,861,625 - 105,899,003 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	104,060,927 - 104,098,305 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	101,903,461 - 101,940,839 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	107,875,659 - 107,916,298 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	107,875,991 - 107,916,294 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	107,299,410 - 107,339,685 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	104,507,601 - 104,542,280 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	99,595,781 - 99,629,825 (+)	NCBI		Celera
RGSC_v3.1	8	104,527,055 - 104,561,735 (+)	NCBI
Cytogenetic Map	8	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive polycystic kidney disease (ISO,ISS)

genetic disease (ISO)

polycystic kidney disease 5 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (EXP)

all-trans-retinoic acid (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-naphthoflavone (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

chlorpyrifos (EXP)

choline (ISO)

cisplatin (EXP)

dibutyl phthalate (ISO)

ethanol (ISO)

ethylparaben (ISO)

folic acid (ISO)

glyphosate (EXP)

imidacloprid (EXP)

L-methionine (ISO)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (ISO)

N-nitrosodiethylamine (EXP)

paracetamol (EXP)

pentanal (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

thiabendazole (EXP)

titanium dioxide (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ciliary transition zone assembly (ISO)

cilium assembly (IBA,IEA,ISO,ISS)

floor plate development (ISO)

neural tube patterning (ISO)

protein localization to cilium (ISO)

regulation of protein localization (IEA,ISO,ISS)

smoothened signaling pathway (ISO)

Cellular Component

axoneme (IEA,ISO)

centriole (IEA,ISO,ISS)

ciliary basal body (IBA,IEA,ISO,ISS)

cytoplasm (IBA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:19852954	PMID:28530676	PMID:29487109

Genomics

Comparative Map Data

Dzip1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	109,067,466 - 109,108,390 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	109,067,775 - 109,108,393 (+)	Ensembl				GRCr8
mRatBN7.2	8	100,188,414 - 100,229,077 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	100,194,999 - 100,228,988 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	105,861,625 - 105,899,003 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	104,060,927 - 104,098,305 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	101,903,461 - 101,940,839 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	107,875,659 - 107,916,298 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	107,875,991 - 107,916,294 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	107,299,410 - 107,339,685 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	104,507,601 - 104,542,280 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	99,595,781 - 99,629,825 (+)	NCBI		Celera
RGSC_v3.1	8	104,527,055 - 104,561,735 (+)	NCBI
Cytogenetic Map	8	q31	NCBI

DZIP1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	138,061,990 - 138,115,608 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	138,061,987 - 138,115,839 (-)	Ensembl			hg38	GRCh38
GRCh37	3	137,780,832 - 137,834,450 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	139,263,522 - 139,317,141 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	139,263,531 - 139,317,149	NCBI
Celera	3	136,205,489 - 136,259,231 (-)	NCBI		Celera
Cytogenetic Map	3	q22.3	NCBI
HuRef	3	135,155,607 - 135,209,215 (-)	NCBI		HuRef
CHM1_1	3	137,744,704 - 137,798,269 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	140,788,462 - 140,856,195 (-)	NCBI		T2T-CHM13v2.0

Dzip1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	99,511,448 - 99,552,128 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	99,511,549 - 99,551,309 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	99,629,501 - 99,670,075 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	99,629,496 - 99,669,256 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	99,530,014 - 99,569,675 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	99,438,947 - 99,478,608 (+)	NCBI		MGSCv36	mm8
Celera	9	99,165,989 - 99,205,734 (+)	NCBI		Celera
Cytogenetic Map	9	E3.3	NCBI
cM Map	9	51.93	NCBI

Dzip1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955501	897,692 - 965,626 (+)	Ensembl
ChiLan1.0	NW_004955501	895,245 - 965,626 (+)	NCBI	ChiLan1.0	ChiLan1.0

DZIP1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	135,922,910 - 136,020,795 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	135,971,555 - 136,025,449 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	135,089,250 - 135,143,117 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	142,540,798 - 142,591,297 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	142,541,624 - 142,582,817 (-)	Ensembl			panPan2	panpan1.1

DZIP1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	34,285,223 - 34,334,957 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	34,285,864 - 34,331,680 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	34,269,895 - 34,327,283 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	34,817,204 - 34,874,635 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	34,817,209 - 34,872,059 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	34,499,127 - 34,556,539 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	34,564,569 - 34,621,916 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	34,815,608 - 34,872,988 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Dzip1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	73,697,867 - 73,730,162 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936540	436,161 - 469,951 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936540	437,638 - 469,945 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DZIP1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	78,861,024 - 78,916,229 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	78,861,007 - 78,916,633 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	86,587,300 - 86,599,588 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DZIP1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	52,425,472 - 52,480,484 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	52,428,570 - 52,480,887 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	25,439,531 - 25,494,393 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dzip1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	14,568,382 - 14,619,272 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	14,568,625 - 14,619,673 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Dzip1l
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	90,972,683 - 91,011,241 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Dzip1l
171 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	208
Count of miRNA genes:	135
Interacting mature miRNAs:	169
Transcripts:	ENSRNOT00000019902
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	63141536	109261840	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
71120	Niddm21	Non-insulin dependent diabetes mellitus QTL 21	3.73		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	8	66992095	111992095	Rat
8693654	Alc32	Alcohol consumption QTL 32	2	0.755	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	8	97492344	116428905	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	98145073	122898010	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Markers in Region

RH136812

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	100,218,670 - 100,218,833 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	107,905,892 - 107,906,054	NCBI	Rnor6.0
Rnor_5.0	8	107,329,276 - 107,329,438	UniSTS	Rnor5.0
RGSC_v3.4	8	104,531,301 - 104,531,463	UniSTS	RGSC3.4
Celera	8	99,619,532 - 99,619,694	UniSTS
Cytogenetic Map	8	q31	UniSTS

RH139924

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	100,218,447 - 100,218,627 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	107,905,669 - 107,905,848	NCBI	Rnor6.0
Rnor_5.0	8	107,329,053 - 107,329,232	UniSTS	Rnor5.0
RGSC_v3.4	8	104,531,078 - 104,531,257	UniSTS	RGSC3.4
Celera	8	99,619,309 - 99,619,488	UniSTS
RH 3.4 Map	8	1039.89	UniSTS
Cytogenetic Map	8	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	151	91	90	59	26	59	6	290	126	11	130	81	92	31	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010053982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019902 ⟹ ENSRNOP00000019902

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	109,074,322 - 109,108,392 (+)	Ensembl
mRatBN7.2 Ensembl	8	100,194,999 - 100,228,988 (+)	Ensembl
Rnor_6.0 Ensembl	8	107,882,219 - 107,916,209 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090299 ⟹ ENSRNOP00000074346

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	109,067,775 - 109,108,393 (+)	Ensembl
mRatBN7.2 Ensembl	8	100,194,999 - 100,228,988 (+)	Ensembl
Rnor_6.0 Ensembl	8	107,875,991 - 107,916,294 (+)	Ensembl

RefSeq Acc Id:

NM_001014095 ⟹ NP_001014117

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	109,074,320 - 109,108,305 (+)	NCBI
mRatBN7.2	8	100,194,999 - 100,228,988 (+)	NCBI
Rnor_6.0	8	107,882,219 - 107,916,209 (+)	NCBI
Rnor_5.0	8	107,299,410 - 107,339,685 (+)	NCBI
RGSC_v3.4	8	104,507,601 - 104,542,280 (+)	RGD
Celera	8	99,595,781 - 99,629,825 (+)	RGD

Sequence:

show sequence

CTGGCGGTGAGGCTGCAGCCTGGAGCTAAGCATGGTCCTCTTTCAGCTCCTTGGCCAGTGGCCT
TGGTGGCATTCTACTCCCGTGGTCAGCCCAGAGCCTCTCCTGCCCATGCAGTACTCAGTAGCCA
CTGCTGACGGCCTTAGCGGCCCGCCGTCCGGGGCCTACACACTTCCCACCTTCAAGTTCCAGCC
TCGCCGTGAGAGCATAGACTGGAGGCGCATCAGTGCTGTGGACGTGGACCGTGTGGCCCGGGAG
CTGGACGTGGCCACTCTGCAGGAGAACATTGCTGGCGTCACCTTCTGTAACTTGGACCGAGAGG
TGTGCAACCACTGTAGGCAGCCTGTGGACCCAGTTCTGCTCAAGGTGCTGCGCTTGGCGCAGCT
CATCATCGAGTACCTGCTGCACTGCCAGGACTGCCTGAGTGCCAGTGTGGCCCAGCTGGAAGCA
CGGCTGCAGGCCAGCCTGGGCCAGCAGCAGCGTGGCCAGCAGGAGCTGGGTCGCCAGGCTGATG
AGCTCAAGGGTGTTCGGGAGGAGAGCCGGCGCAGGCGAAAGATGATCAGTACCCTGCAGCAGCT
GCTTCTGCAGACAGGCGCCCACAGCTACCACACGTGCCATTTGTGTGACAAGACGTTCATGAAT
GCCACCTTTCTCCGGGGCCACATCCAGCGCAGGCATGCAGGCATGGCGGAAGTCGGGAAGCAGA
AGCAGGAACAGCAGCTGGGGGAGGTGCTGGAGGAGCTTCGGGCCAAGCTCAAGTGGACCCAAGG
GGAGCTGGAAGCCCAGAGGGAGGCTGAGCGGCAGCGGCAGGCCCAGGAATTAGAGATGATTCGT
CAGAGGGAAATAGAAGCTAAAAAGAAGTTCGATGAATGGAAAGAAAAAGAACGGAGCAAGCTTT
ATGGGGAAATAGACAAGCTGAAACAGCTCTTTTGGGATGAATTTAAAACTGTTGCCAACCAGAA
CTCTACATTAGAAGAGAAGCTGAAGGTGCTGCAGTCCTACAGTATGACTGAGTCTCACCTCGGG
TCTCTGCGGGATGAAGAGTCAGAGGAGAGACTCAAGCATGCCCAGGAGCTCCAGGCCCTTCGAG
AAAAGATGGACATTCAGAAAACTGAGTGGAAGAGAAAAATGAAGGCCCTGCATGAAGAGCGGGC
AGCTGAGAGGAGACAGCTGCAGGAGGAGAACGAGAGGCTTCATGTCACGCTGTCTCAGGATCAG
AAGAAAGCGGCAGCCCAGTCCCAGCGCCACATCAATGCCCTTCGTGCCCAGCTGCAGGAACAAG
CCAGGCTTATTGAGTCACAGGAGGAGACGATCCAGACTTTGTCCTTCAGGAGGATGGAGGAAGT
CCAAGAGGTGCCAAAGGCTGTGGTCACAGAGGAGGACTCTTCTGAGGAAGAGCTGGAGGCCTCC
CTCGAGGAGCAGCAGGAGCAAAGGAAGGTGTTAGCAGCTCTCAGGAACAACCCTGCTTGGCTGA
AGCAGTTCCGGCCCATCCTGGAGGACACCCTGGAAGAGAAGCTGGAGGGCATGGGGATAAAGAG
GGGCACAAAGGGAATTTCAGCCCAGACTGTCCGACGCCTGGAGCCCCTGCTGAGAACACAAAGG
GAGCAGACAGCCCGAAGCTTCCGAGAATTTCTCAGTCTGAGGGAAAAACTCAACCAGGAAGTGA
GCAGCAGGGCGAAGAAGAGATGGGAGGGTACGGCTGTGGTGCCCCAGCCAGATGGCCAGCCTCC
AGTCAAAAGCCAGCGGACCACACTGGCCACAAGGGAGGTCCGGCCAAAGACCAGGACCCTGACT
GTGGCACTGCCATCCAAGCCGGCAGAGCCTTCTACATCAACCCCTCGAGGCCACAGCAGCCATG
GCCCCGGCCTCACCCAGGTGTCCACCCCCATTCCACGCCCCAGAGTGCATGGACCCTCCAGTAC
CCCCGTTTCCCCTGGGCCCGGGCTGAGCACCCCACCTTTCAGTTCTGAAGAAGAGCCAGAGGGA
GACGTCGTACAACGTGTGTCTCTTCAGCCTCCTAAAGTTCTCCCTAGGTCAGCACCCCAGCCTG
AGGACAACTGGGGCTGGTCTGATTCTGAGACCTCAGAGGAGAGTGCCCAATCCCCTGGGAAGGG
CTCAGATGGGCTGGCTTCCTCAGCAACACTGGTACAGTCGATGGTCAAAAACCTGGAGAAACAG
CTTGAAACCCCAGCAAAGAAGCCTTCTGGAGGGGTCAATATGTTCTTAAGACCCAACACTGCCC
TTCAGAGGTCTTCTACACCAGCAAGGAAGACTCAGCTTTCAGAAGATGAAAGTGACTTGGAGAT
CTCGTCTTTGGAAGATCTCTCCCATGACCTGGGCCCAAAAGGAAAGCCAACACCTTTGTCCCAC
TCGAAGCTCCCAGAAAAGTTTGATGCCAGCCCTTGGAGCTCTGGGTCACGACCCAGGATTCCTG
GCTGGTGATTCTGCCAGAGGGCTTAGCCTTGTTTCTTGGCTGGTCTTCCCCAAATGGAAGAAAC
TGTCAGGCCTCCCACTCTCACTAGCAGCCAAGAAGTCTTTCCCTTGAAGACAAACAGAGCAGGA
GACAGATGGGACCTCTATCCATTCCCTGACGGTCACCCCAAAAGGCTGCGTCCTGATGCTGTGT
CTTGTTTAAACGTGAGGATTATAACAGGACTTCCAAGTGTTTCTTCCATGATCCCAGCCCAGAC
TGAAAGTAGTTATTGTTTCTAAGTTTTTGTCATCTGCAGGTCACTGTGGCGTTGGGTCCTGAGT
TAGGTAGTCTATGGTGGACTCTCTAGCTTTTCACTACAGAGTTGGGGTGCAGACAGAGGTAGGA
GGTGCAAAGTGCCTGCTGCCAGGGCTAGGCATAGTAATCAAATGCTAGGCATCAGAGTGTTATG
GGCTGCCAGGGCCAGGCATAGTAATCGAGTGCTATGCATCAGAGTGTTATACGGGCATGGGAGA
GGCTGGCTGCCCTACTTTCGTTTCTGTTGCTGTGATAAACACTCTAACCAAAAGCACCTTAGAG
ACTTTGTTGATCTATGACTGTGAGAGGTGAAGGCTGGAATGTTAAGGTAGGTTTGCACACAGCA
CTACCTCTGACCAAGGAATTCACTCTATAGCCAAAGAAACACTAGGAACCATAGAGGATACTGC
TTGCTGGCTGCAGCTGTACGTACTCAGCTAGCTTTTTTATACAGCTCAGCACCGCCTGCCTAGG
GATGGTACTGCCCACAGTAGGCTGGGTTCTTCTGTGTGTGTGAACAATCTAGACAATCCCTCAC
AGACATTGCCCTCAAAGCACTTCCTCTATGGAGGCTCTCAGCTGTGGTGAAGGGATATGCAAAA
CTAACCAGGACACCATTCCACCCTGCCCCGGATGACCCATAGAACCACAAATTTAATTTTTGAG
ATCATTTCTGACTGAGTTTTTTATATATTGACTGTATTTTTGGTTGGAGAGGGTTTGGGTTTTG
AGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCTTTCTACAGACCAGGCCGCCCTT
GAACTCAGAGATCTGCCTGCTTCTGCCTCCTGAGCGCTGAGATTAAAGGTGTGCATGGTGAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006243626 ⟹ XP_006243688

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	109,067,466 - 109,108,390 (+)	NCBI
mRatBN7.2	8	100,188,414 - 100,227,848 (+)	NCBI
Rnor_6.0	8	107,875,659 - 107,916,298 (+)	NCBI
Rnor_5.0	8	107,299,410 - 107,339,685 (+)	NCBI

Sequence:

show sequence

GGGGGTGGGGGTGGGGAGCACTGCAGACCCCAGTCCTGAGCTACTGGCGAGGAGAGAGGCGCAG
AGTCCGCGCGGCTGGCAGCATCGTGCGGCTGCATTGCAGGAGATGGAGTGAGTCTGGACTTGCG
GACGTGAAGCCAGCTTTGTAACCAAGAGACATCGAGGATTTACGCCCTCTAGCACTGACCCTGT
CATGATTTGCTGTGAACCCCGGCAGCCCTTCCATTCTGCTCGAGAAATCTCAGGTCCTCTTTCA
GCTCCTTGGCCAGTGGCCTTGGTGGCATTCTACTCCCGTGGTCAGCCCAGAGCCTCTCCTGCCC
ATGCAGTACTCAGTAGCCACTGCTGACGGCCTTAGCGGCCCGCCGTCCGGGGCCTACACACTTC
CCACCTTCAAGTTCCAGCCTCGCCGTGAGAGCATAGACTGGAGGCGCATCAGTGCTGTGGACGT
GGACCGTGTGGCCCGGGAGCTGGACGTGGCCACTCTGCAGGAGAACATTGCTGGCGTCACCTTC
TGTAACTTGGACCGAGAGGTGTGCAACCACTGTAGGCAGCCTGTGGACCCAGTTCTGCTCAAGG
TGCTGCGCTTGGCGCAGCTCATCATCGAGTACCTGCTGCACTGCCAGGACTGCCTGAGTGCCAG
TGTGGCCCAGCTGGAAGCACGGCTGCAGGCCAGCCTGGGCCAGCAGCAGCGTGGCCAGCAGGAG
CTGGGTCGCCAGGCTGATGAGCTCAAGGGTGTTCGGGAGGAGAGCCGGCGCAGGCGAAAGATGA
TCAGTACCCTGCAGCAGCTGCTTCTGCAGACAGGCGCCCACAGCTACCACACGTGCCATTTGTG
TGACAAGACGTTCATGAATGCCACCTTTCTCCGGGGCCACATCCAGCGCAGGCATGCAGGCATG
GCGGAAGTCGGGAAGCAGAAGCAGGAACAGCAGCTGGGGGAGGTGCTGGAGGAGCTTCGGGCCA
AGCTCAAGTGGACCCAAGGGGAGCTGGAAGCCCAGAGGGAGGCTGAGCGGCAGCGGCAGGCCCA
GGAATTAGAGATGATTCGTCAGAGGGAAATAGAAGCTAAAAAGAAGTTCGATGAATGGAAAGAA
AAAGAACGGAGCAAGCTTTATGGGGAAATAGACAAGCTGAAACAGCTCTTTTGGGATGAATTTA
AAACTGTTGCCAACCAGAACTCTACATTAGAAGAGAAGCTGAAGGTGCTGCAGTCCTACAGTAT
GACTGAGTCTCACCTCGGGTCTCTGCGGGATGAAGAGTCAGAGGAGAGACTCAAGCATGCCCAG
GAGCTCCAGGCCCTTCGAGAAAAGATGGACATTCAGAAAACTGAGTGGAAGAGAAAAATGAAGG
CCCTGCATGAAGAGCGGGCAGCTGAGAGGAGACAGCTGCAGGAGGAGAACGAGAGGCTTCATGT
CACGCTGTCTCAGGATCAGAAGAAAGCGGCAGCCCAGTCCCAGCGCCACATCAATGCCCTTCGT
GCCCAGCTGCAGGAACAAGCCAGGCTTATTGAGTCACAGGAGGAGACGATCCAGACTTTGTCCT
TCAGGAGGATGGAGGAAGTCCAAGAGGTGCCAAAGGCTGTGGTCACAGAGGAGGACTCTTCTGA
GGAAGAGCTGGAGGCCTCCCTCGAGGAGCAGCAGGAGCAAAGGAAGGTGTTAGCAGCTCTCAGG
AACAACCCTGCTTGGCTGAAGCAGTTCCGGCCCATCCTGGAGGACACCCTGGAAGAGAAGCTGG
AGGGCATGGGGATAAAGAGGGGCACAAAGGGAATTTCAGCCCAGACTGTCCGACGCCTGGAGCC
CCTGCTGAGAACACAAAGGGAGCAGACAGCCCGAAGCTTCCGAGAATTTCTCAGTCTGAGGGAA
AAACTCAACCAGGAAGTGAGCAGCAGGGCGAAGAAGAGATGGGAGGGTACGGCTGTGGTGCCCC
AGCCAGATGGCCAGCCTCCAGTCAAAAGCCAGCGGACCACACTGGCCACAAGGGAGGTCCGGCC
AAAGACCAGGACCCTGACTGTGGCACTGCCATCCAAGCCGGCAGAGCCTTCTACATCAACCCCT
CGAGGCCACAGCAGCCATGGCCCCGGCCTCACCCAGGTGTCCACCCCCATTCCACGCCCCAGAG
TGCATGGACCCTCCAGTACCCCCGTTTCCCCTGGGCCCGGGCTGAGCAGCACCCCACCTTTCAG
TTCTGAAGAAGAGCCAGAGGGAGACGTCGTACAACGTGTGTCTCTTCAGCCTCCTAAAGTTCTC
CCTAGGTCAGCACCCCAGCCTGAGGACAACTGGGGCTGGTCTGATTCTGAGACCTCAGAGGAGA
GTGCCCAATCCCCTGGGAAGGGCTCAGATGGGCTGGCTTCCTCAGCAACACTGGTACAGTCGAT
GGTCAAAAACCTGGAGAAACAGCTTGAAACCCCAGCAAAGAAGCCTTCTGGAGGGGTCAATATG
TTCTTAAGACCCAACACTGCCCTTCAGAGGTCTTCTACACCAGCAAGGAAGACTCAGCTTTCAG
AAGATGAAAGTGACTTGGAGATCTCGTCTTTGGAAGATCTCTCCCATGACCTGGGCCCAAAAGG
AAAGCCAACACCTTTGTCCCACTCGAAGCTCCCAGAAAAGTTTGATGCCAGCCCTTGGAGCTCT
GGGTCACGACCCAGGATTCCTGGCTGGTGATTCTGCCAGAGGGCTTAGCCTTGTTTCTTGGCTG
GTCTTCCCCAAATGGAAGAAACTGTCAGGCCTCCCACTCTCACTAGCAGCCAAGAAGTCTTTCC
CTTGAAGACAAACAGAGCAGGAGACAGATGGGACCTCTATCCATTCCCTGACGGTCACCCCAAA
AGGCTGCGTCCTGATGCTGTGTCTTGTTTAAACGTGAGGATTATAACAGGACTTCCAAGTGTTT
CTTCCATGATCCCAGCCCAGACTGAAAGTAGTTATTGTTTCTAAGTTTTTGTCATCTGCAGGTC
ACTGTGGCGTTGGGTCCTGAGTTAGGTAGTCTATGGTGGACTCTCTAGCTTTTCACTACAGAGT
TGGGGTGCAGACAGAGGTAGGAGGTGCAAAGTGCCTGCTGCCAGGGCTAGGCATAGTAATCAAA
TGCTAGGCATCAGAGTGTTATGGGCTGCCAGGGCCAGGCATAGTAATCGAGTGCTATGCATCAG
AGTGTTATACGGGCATGGGAGAGGCTGGCTGCCCTACTTTCGTTTCTGTTGCTGTGATAAACAC
TCTAACCAAAAGCACCTTAGAGACTTTGTTGATCTATGACTGTGAGAGGTGAAGGCTGGAATGT
TAAGGTAGGTTTGCACACAGCACTACCTCTGACCAAGGAATTCACTCTATAGCCAAAGAAACAC
TAGGAACCATAGAGGATACTGCTTGCTGGCTGCAGCTGTACGTACTCAGCTAGCTTTTTTATAC
AGCTCAGCACCGCCTGCCTAGGGATGGTACTGCCCACAGTAGGCTGGGTTCTTCTGTGTGTGTG
AACAATCTAGACAATCCCTCACAGACATTGCCCTCAAAGCACTTCCTCTATGGAGGCTCTCAGC
TGTGGTGAAGGGATATGCAAAACTAACCAGGACACCATTCCACCCTGCCCCGGATGACCCATAG
AACCACAAATTTAATTTTTGAGATCATTTCTGACTGAGTTTTTTATATATTGACTGTATTTTTG
GTTGGAGAGGGTTTGGGTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCT
TTCTACAGACCAGGCCGCCCTTGAACTCAGAGATCTGCCTGCTTCTGCCTCCTGAGCGCTGAGA
TTAAAGGTGTGCATGGTGTCTTGTGCCTTAGATTGAATTTTTTTTAGTGTGAAAATATTTATTT
ATTATAGTGAACATTTAAATATAATGATGTATACACCTCTTTA

hide sequence

RefSeq Acc Id:

XM_006243627 ⟹ XP_006243689

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	109,067,962 - 109,108,390 (+)	NCBI
mRatBN7.2	8	100,188,663 - 100,227,848 (+)	NCBI
Rnor_6.0	8	107,875,802 - 107,916,298 (+)	NCBI
Rnor_5.0	8	107,299,410 - 107,339,685 (+)	NCBI

Sequence:

show sequence

GATGTGGCAACCCCCAAGACCTCCAGTCACCAGCCCCTGCTCCGGGTGACCCCTAGACTGACCC
AGGCCTCCCAGGAAAACTATGCCTGGAATCCAGCCGGGAGCCGCGGGAGGGAGCGAGGTTCCAG
GCGGAGCTACTCGGCCGCTGCGCGCGCAGGTTAAACATTAGTGGCTGCAGTCGCCAAGCTAGGA
ACCGAGCTGCGTGGCCGAGAGTGCCTCACGACGTCCCGCTCCCTGCGCCTCCATCCCAGCGGCC
TCGGATTGTTCAGGAATGAGAAGCCAGCTTTGTAACCAAGAGACATCGAGGATTTACGCCCTCT
AGCACTGACCCTGTCATGATTTGCTGTGAACCCCGGCAGCCCTTCCATTCTGCTCGAGAAATCT
CAGGTCCTCTTTCAGCTCCTTGGCCAGTGGCCTTGGTGGCATTCTACTCCCGTGGTCAGCCCAG
AGCCTCTCCTGCCCATGCAGTACTCAGTAGCCACTGCTGACGGCCTTAGCGGCCCGCCGTCCGG
GGCCTACACACTTCCCACCTTCAAGTTCCAGCCTCGCCGTGAGAGCATAGACTGGAGGCGCATC
AGTGCTGTGGACGTGGACCGTGTGGCCCGGGAGCTGGACGTGGCCACTCTGCAGGAGAACATTG
CTGGCGTCACCTTCTGTAACTTGGACCGAGAGGTGTGCAACCACTGTAGGCAGCCTGTGGACCC
AGTTCTGCTCAAGGTGCTGCGCTTGGCGCAGCTCATCATCGAGTACCTGCTGCACTGCCAGGAC
TGCCTGAGTGCCAGTGTGGCCCAGCTGGAAGCACGGCTGCAGGCCAGCCTGGGCCAGCAGCAGC
GTGGCCAGCAGGAGCTGGGTCGCCAGGCTGATGAGCTCAAGGGTGTTCGGGAGGAGAGCCGGCG
CAGGCGAAAGATGATCAGTACCCTGCAGCAGCTGCTTCTGCAGACAGGCGCCCACAGCTACCAC
ACGTGCCATTTGTGTGACAAGACGTTCATGAATGCCACCTTTCTCCGGGGCCACATCCAGCGCA
GGCATGCAGGCATGGCGGAAGTCGGGAAGCAGAAGCAGGAACAGCAGCTGGGGGAGGTGCTGGA
GGAGCTTCGGGCCAAGCTCAAGTGGACCCAAGGGGAGCTGGAAGCCCAGAGGGAGGCTGAGCGG
CAGCGGCAGGCCCAGGAATTAGAGATGATTCGTCAGAGGGAAATAGAAGCTAAAAAGAAGTTCG
ATGAATGGAAAGAAAAAGAACGGAGCAAGCTTTATGGGGAAATAGACAAGCTGAAACAGCTCTT
TTGGGATGAATTTAAAACTGTTGCCAACCAGAACTCTACATTAGAAGAGAAGCTGAAGGTGCTG
CAGTCCTACAGTATGACTGAGTCTCACCTCGGGTCTCTGCGGGATGAAGAGTCAGAGGAGAGAC
TCAAGCATGCCCAGGAGCTCCAGGCCCTTCGAGAAAAGATGGACATTCAGAAAACTGAGTGGAA
GAGAAAAATGAAGGCCCTGCATGAAGAGCGGGCAGCTGAGAGGAGACAGCTGCAGGAGGAGAAC
GAGAGGCTTCATGTCACGCTGTCTCAGGATCAGAAGAAAGCGGCAGCCCAGTCCCAGCGCCACA
TCAATGCCCTTCGTGCCCAGCTGCAGGAACAAGCCAGGCTTATTGAGTCACAGGAGGAGACGAT
CCAGACTTTGTCCTTCAGGAGGATGGAGGAAGTCCAAGAGGTGCCAAAGGCTGTGGTCACAGAG
GAGGACTCTTCTGAGGAAGAGCTGGAGGCCTCCCTCGAGGAGCAGCAGGAGCAAAGGAAGGTGT
TAGCAGCTCTCAGGAACAACCCTGCTTGGCTGAAGCAGTTCCGGCCCATCCTGGAGGACACCCT
GGAAGAGAAGCTGGAGGGCATGGGGATAAAGAGGGGCACAAAGGGAATTTCAGCCCAGACTGTC
CGACGCCTGGAGCCCCTGCTGAGAACACAAAGGGAGCAGACAGCCCGAAGCTTCCGAGAATTTC
TCAGTCTGAGGGAAAAACTCAACCAGGAAGTGAGCAGCAGGGCGAAGAAGAGATGGGAGGGTAC
GGCTGTGGTGCCCCAGCCAGATGGCCAGCCTCCAGTCAAAAGCCAGCGGACCACACTGGCCACA
AGGGAGGTCCGGCCAAAGACCAGGACCCTGACTGTGGCACTGCCATCCAAGCCGGCAGAGCCTT
CTACATCAACCCCTCGAGGCCACAGCAGCCATGGCCCCGGCCTCACCCAGGTGTCCACCCCCAT
TCCACGCCCCAGAGTGCATGGACCCTCCAGTACCCCCGTTTCCCCTGGGCCCGGGCTGAGCAGC
ACCCCACCTTTCAGTTCTGAAGAAGAGCCAGAGGGAGACGTCGTACAACGTGTGTCTCTTCAGC
CTCCTAAAGTTCTCCCTAGGTCAGCACCCCAGCCTGAGGACAACTGGGGCTGGTCTGATTCTGA
GACCTCAGAGGAGAGTGCCCAATCCCCTGGGAAGGGCTCAGATGGGCTGGCTTCCTCAGCAACA
CTGGTACAGTCGATGGTCAAAAACCTGGAGAAACAGCTTGAAACCCCAGCAAAGAAGCCTTCTG
GAGGGGTCAATATGTTCTTAAGACCCAACACTGCCCTTCAGAGGTCTTCTACACCAGCAAGGAA
GACTCAGCTTTCAGAAGATGAAAGTGACTTGGAGATCTCGTCTTTGGAAGATCTCTCCCATGAC
CTGGGCCCAAAAGGAAAGCCAACACCTTTGTCCCACTCGAAGCTCCCAGAAAAGTTTGATGCCA
GCCCTTGGAGCTCTGGGTCACGACCCAGGATTCCTGGCTGGTGATTCTGCCAGAGGGCTTAGCC
TTGTTTCTTGGCTGGTCTTCCCCAAATGGAAGAAACTGTCAGGCCTCCCACTCTCACTAGCAGC
CAAGAAGTCTTTCCCTTGAAGACAAACAGAGCAGGAGACAGATGGGACCTCTATCCATTCCCTG
ACGGTCACCCCAAAAGGCTGCGTCCTGATGCTGTGTCTTGTTTAAACGTGAGGATTATAACAGG
ACTTCCAAGTGTTTCTTCCATGATCCCAGCCCAGACTGAAAGTAGTTATTGTTTCTAAGTTTTT
GTCATCTGCAGGTCACTGTGGCGTTGGGTCCTGAGTTAGGTAGTCTATGGTGGACTCTCTAGCT
TTTCACTACAGAGTTGGGGTGCAGACAGAGGTAGGAGGTGCAAAGTGCCTGCTGCCAGGGCTAG
GCATAGTAATCAAATGCTAGGCATCAGAGTGTTATGGGCTGCCAGGGCCAGGCATAGTAATCGA
GTGCTATGCATCAGAGTGTTATACGGGCATGGGAGAGGCTGGCTGCCCTACTTTCGTTTCTGTT
GCTGTGATAAACACTCTAACCAAAAGCACCTTAGAGACTTTGTTGATCTATGACTGTGAGAGGT
GAAGGCTGGAATGTTAAGGTAGGTTTGCACACAGCACTACCTCTGACCAAGGAATTCACTCTAT
AGCCAAAGAAACACTAGGAACCATAGAGGATACTGCTTGCTGGCTGCAGCTGTACGTACTCAGC
TAGCTTTTTTATACAGCTCAGCACCGCCTGCCTAGGGATGGTACTGCCCACAGTAGGCTGGGTT
CTTCTGTGTGTGTGAACAATCTAGACAATCCCTCACAGACATTGCCCTCAAAGCACTTCCTCTA
TGGAGGCTCTCAGCTGTGGTGAAGGGATATGCAAAACTAACCAGGACACCATTCCACCCTGCCC
CGGATGACCCATAGAACCACAAATTTAATTTTTGAGATCATTTCTGACTGAGTTTTTTATATAT
TGACTGTATTTTTGGTTGGAGAGGGTTTGGGTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGC
TGTCCTGGAACTCTTTCTACAGACCAGGCCGCCCTTGAACTCAGAGATCTGCCTGCTTCTGCCT
CCTGAGCGCTGAGATTAAAGGTGTGCATGGTGTCTTGTGCCTTAGATTGAATTTTTTTTAGTGT
GAAAATATTTATTTATTATAGTGAACATTTAAATATAATGATGTATACACCTCTTTA

hide sequence

RefSeq Acc Id:

XM_063265593 ⟹ XP_063121663

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	109,067,466 - 109,108,390 (+)	NCBI

RefSeq Acc Id:

XM_063265594 ⟹ XP_063121664

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	109,067,962 - 109,108,390 (+)	NCBI

RefSeq Acc Id:

XR_010053982

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	109,067,466 - 109,098,550 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014117	(Get FASTA)	NCBI Sequence Viewer
	XP_006243688	(Get FASTA)	NCBI Sequence Viewer
	XP_006243689	(Get FASTA)	NCBI Sequence Viewer
	XP_063121663	(Get FASTA)	NCBI Sequence Viewer
	XP_063121664	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83786	(Get FASTA)	NCBI Sequence Viewer
	EDL77434	(Get FASTA)	NCBI Sequence Viewer
	EDL77435	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000019902
	ENSRNOP00000074346
GenBank Protein	Q5XIA0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014117 ⟸ NM_001014095

- UniProtKB:

Q5XIA0 (UniProtKB/Swiss-Prot), A6I2E2 (UniProtKB/TrEMBL), A0A8L2R8N8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQYSVATADGLSGPPSGAYTLPTFKFQPRRESIDWRRISAVDVDRVARELDVATLQENIAGVTF
CNLDREVCNHCRQPVDPVLLKVLRLAQLIIEYLLHCQDCLSASVAQLEARLQASLGQQQRGQQE
LGRQADELKGVREESRRRRKMISTLQQLLLQTGAHSYHTCHLCDKTFMNATFLRGHIQRRHAGM
AEVGKQKQEQQLGEVLEELRAKLKWTQGELEAQREAERQRQAQELEMIRQREIEAKKKFDEWKE
KERSKLYGEIDKLKQLFWDEFKTVANQNSTLEEKLKVLQSYSMTESHLGSLRDEESEERLKHAQ
ELQALREKMDIQKTEWKRKMKALHEERAAERRQLQEENERLHVTLSQDQKKAAAQSQRHINALR
AQLQEQARLIESQEETIQTLSFRRMEEVQEVPKAVVTEEDSSEEELEASLEEQQEQRKVLAALR
NNPAWLKQFRPILEDTLEEKLEGMGIKRGTKGISAQTVRRLEPLLRTQREQTARSFREFLSLRE
KLNQEVSSRAKKRWEGTAVVPQPDGQPPVKSQRTTLATREVRPKTRTLTVALPSKPAEPSTSTP
RGHSSHGPGLTQVSTPIPRPRVHGPSSTPVSPGPGLSTPPFSSEEEPEGDVVQRVSLQPPKVLP
RSAPQPEDNWGWSDSETSEESAQSPGKGSDGLASSATLVQSMVKNLEKQLETPAKKPSGGVNMF
LRPNTALQRSSTPARKTQLSEDESDLEISSLEDLSHDLGPKGKPTPLSHSKLPEKFDASPWSSG
SRPRIPGW

hide sequence

RefSeq Acc Id:	XP_006243688 ⟸ XM_006243626
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2R8N8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQYSVATADGLSGPPSGAYTLPTFKFQPRRESIDWRRISAVDVDRVARELDVATLQENIAGVTF CNLDREVCNHCRQPVDPVLLKVLRLAQLIIEYLLHCQDCLSASVAQLEARLQASLGQQQRGQQE LGRQADELKGVREESRRRRKMISTLQQLLLQTGAHSYHTCHLCDKTFMNATFLRGHIQRRHAGM AEVGKQKQEQQLGEVLEELRAKLKWTQGELEAQREAERQRQAQELEMIRQREIEAKKKFDEWKE KERSKLYGEIDKLKQLFWDEFKTVANQNSTLEEKLKVLQSYSMTESHLGSLRDEESEERLKHAQ ELQALREKMDIQKTEWKRKMKALHEERAAERRQLQEENERLHVTLSQDQKKAAAQSQRHINALR AQLQEQARLIESQEETIQTLSFRRMEEVQEVPKAVVTEEDSSEEELEASLEEQQEQRKVLAALR NNPAWLKQFRPILEDTLEEKLEGMGIKRGTKGISAQTVRRLEPLLRTQREQTARSFREFLSLRE KLNQEVSSRAKKRWEGTAVVPQPDGQPPVKSQRTTLATREVRPKTRTLTVALPSKPAEPSTSTP RGHSSHGPGLTQVSTPIPRPRVHGPSSTPVSPGPGLSSTPPFSSEEEPEGDVVQRVSLQPPKVL PRSAPQPEDNWGWSDSETSEESAQSPGKGSDGLASSATLVQSMVKNLEKQLETPAKKPSGGVNM FLRPNTALQRSSTPARKTQLSEDESDLEISSLEDLSHDLGPKGKPTPLSHSKLPEKFDASPWSS GSRPRIPGW hide sequence

RefSeq Acc Id:	XP_006243689 ⟸ XM_006243627
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2R8N8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQYSVATADGLSGPPSGAYTLPTFKFQPRRESIDWRRISAVDVDRVARELDVATLQENIAGVTF CNLDREVCNHCRQPVDPVLLKVLRLAQLIIEYLLHCQDCLSASVAQLEARLQASLGQQQRGQQE LGRQADELKGVREESRRRRKMISTLQQLLLQTGAHSYHTCHLCDKTFMNATFLRGHIQRRHAGM AEVGKQKQEQQLGEVLEELRAKLKWTQGELEAQREAERQRQAQELEMIRQREIEAKKKFDEWKE KERSKLYGEIDKLKQLFWDEFKTVANQNSTLEEKLKVLQSYSMTESHLGSLRDEESEERLKHAQ ELQALREKMDIQKTEWKRKMKALHEERAAERRQLQEENERLHVTLSQDQKKAAAQSQRHINALR AQLQEQARLIESQEETIQTLSFRRMEEVQEVPKAVVTEEDSSEEELEASLEEQQEQRKVLAALR NNPAWLKQFRPILEDTLEEKLEGMGIKRGTKGISAQTVRRLEPLLRTQREQTARSFREFLSLRE KLNQEVSSRAKKRWEGTAVVPQPDGQPPVKSQRTTLATREVRPKTRTLTVALPSKPAEPSTSTP RGHSSHGPGLTQVSTPIPRPRVHGPSSTPVSPGPGLSSTPPFSSEEEPEGDVVQRVSLQPPKVL PRSAPQPEDNWGWSDSETSEESAQSPGKGSDGLASSATLVQSMVKNLEKQLETPAKKPSGGVNM FLRPNTALQRSSTPARKTQLSEDESDLEISSLEDLSHDLGPKGKPTPLSHSKLPEKFDASPWSS GSRPRIPGW hide sequence

Ensembl Acc Id:

ENSRNOP00000074346 ⟸ ENSRNOT00000090299

Ensembl Acc Id:

ENSRNOP00000019902 ⟸ ENSRNOT00000019902

RefSeq Acc Id:	XP_063121663 ⟸ XM_063265593
- Peptide Label:	isoform X2
- UniProtKB:	Q5XIA0 (UniProtKB/Swiss-Prot), A6I2E2 (UniProtKB/TrEMBL), A0A8L2R8N8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063121664 ⟸ XM_063265594
- Peptide Label:	isoform X2
- UniProtKB:	Q5XIA0 (UniProtKB/Swiss-Prot), A6I2E2 (UniProtKB/TrEMBL), A0A8L2R8N8 (UniProtKB/TrEMBL)

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIA0-F1-model_v2	AlphaFold	Q5XIA0	1-776	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696220

Promoter ID:

EPDNEW_R6738

Type:

multiple initiation site

Name:

Dzip1l_1

Description:

DAZ interacting zinc finger protein 1-like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	107,875,966 - 107,876,026	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311430	AgrOrtholog
BioCyc Gene	G2FUF-29387	BioCyc
Ensembl Genes	ENSRNOG00000014746	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000019902	ENTREZGENE
	ENSRNOT00000090299	ENTREZGENE
IMAGE_CLONE	IMAGE:7097259	IMAGE-MGC_LOAD
InterPro	DZIP1_N	UniProtKB/Swiss-Prot
	DZIP_RILPL	UniProtKB/Swiss-Prot
	Znf_C2H2_type	UniProtKB/Swiss-Prot
KEGG Report	rno:315952	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94765	IMAGE-MGC_LOAD
NCBI Gene	315952	ENTREZGENE
PANTHER	ZINC FINGER PROTEIN DZIP1	UniProtKB/Swiss-Prot
	ZINC FINGER PROTEIN DZIP1L	UniProtKB/Swiss-Prot
Pfam	Dzip-like_N	UniProtKB/Swiss-Prot
PhenoGen	Dzip1l	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000014746	RatGTEx
UniProt	A0A8L2R8N8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UJI0_RAT	UniProtKB/TrEMBL
	A6I2E2	ENTREZGENE, UniProtKB/TrEMBL
	DZI1L_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-06-05	Dzip1l	DAZ interacting zinc finger protein 1-like	Dzip1l	DAZ interacting protein 1-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Dzip1l	DAZ interacting protein 1-like	RGD1311430	similar to hypothetical protein FLJ32844	Symbol and Name updated	1299863	APPROVED
2005-12-06	RGD1311430	similar to hypothetical protein FLJ32844	RGD1311430_predicted	similar to hypothetical protein FLJ32844 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1311430_predicted	similar to hypothetical protein FLJ32844 (predicted)	LOC315952_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC315952_predicted	similar to hypothetical protein FLJ32844 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM