Pign (phosphatidylinositol glycan anchor biosynthesis, class N) - Rat Genome Database

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Gene: Pign (phosphatidylinositol glycan anchor biosynthesis, class N) Rattus norvegicus
Analyze
Symbol: Pign
Name: phosphatidylinositol glycan anchor biosynthesis, class N
RGD ID: 1311346
Description: Predicted to enable mannose-ethanolamine phosphotransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in cytosol and plasma membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in multiple congenital anomalies-hypotonia-seizures syndrome 1. Orthologous to human PIGN (phosphatidylinositol glycan anchor biosynthesis class N); PARTICIPATES IN glycosylphosphatidylinositol anchor biosynthetic pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GPI ethanolamine phosphate transferase 1; LOC309051; phosphatidylinositol glycan, class N
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81322,173,670 - 22,321,344 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1322,176,576 - 22,321,379 (-)EnsemblGRCr8
mRatBN7.21321,659,092 - 21,812,932 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1321,662,455 - 21,806,790 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1321,998,808 - 22,126,716 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01323,283,603 - 23,411,510 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01321,967,490 - 22,095,400 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1321,938,521 - 22,069,261 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1321,937,931 - 22,068,668 (-)NCBILyon_Normotensive
Lyon_Hypertensive1321,951,778 - 22,082,514 (-)NCBILyon_Hypertensive
F344_StmMcwi1321,858,550 - 21,989,052 (-)NCBIF344_StmMcwi
Rnor_6.01325,510,593 - 25,662,943 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1325,513,892 - 25,652,473 (-)Ensemblrn6Rnor6.0
Rnor_5.01330,779,066 - 30,820,235 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01330,676,676 - 30,740,322 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41311,668,749 - 11,833,940 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1321,552,506 - 21,677,358 (-)NCBICelera
RGSC_v3.11311,442,630 - 11,828,636 (-)NCBI
Cytogenetic Map13p11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19946888  


Genomics

Comparative Map Data
Pign
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81322,173,670 - 22,321,344 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1322,176,576 - 22,321,379 (-)EnsemblGRCr8
mRatBN7.21321,659,092 - 21,812,932 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1321,662,455 - 21,806,790 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1321,998,808 - 22,126,716 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01323,283,603 - 23,411,510 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01321,967,490 - 22,095,400 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1321,938,521 - 22,069,261 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1321,937,931 - 22,068,668 (-)NCBILyon_Normotensive
Lyon_Hypertensive1321,951,778 - 22,082,514 (-)NCBILyon_Hypertensive
F344_StmMcwi1321,858,550 - 21,989,052 (-)NCBIF344_StmMcwi
Rnor_6.01325,510,593 - 25,662,943 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1325,513,892 - 25,652,473 (-)Ensemblrn6Rnor6.0
Rnor_5.01330,779,066 - 30,820,235 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01330,676,676 - 30,740,322 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41311,668,749 - 11,833,940 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1321,552,506 - 21,677,358 (-)NCBICelera
RGSC_v3.11311,442,630 - 11,828,636 (-)NCBI
Cytogenetic Map13p11NCBI
PIGN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381862,017,615 - 62,187,056 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1861,905,255 - 62,187,118 (-)Ensemblhg38GRCh38
GRCh371859,708,397 - 59,854,289 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361857,862,437 - 58,005,269 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341857,862,439 - 58,005,206NCBI
Celera1856,430,705 - 56,573,517 (-)NCBICelera
Cytogenetic Map18q21.33NCBI
HuRef1856,421,823 - 56,565,179 (-)NCBIHuRef
CHM1_11859,707,055 - 59,849,802 (-)NCBICHM1_1
T2T-CHM13v2.01862,220,799 - 62,389,993 (-)NCBIT2T-CHM13v2.0
Pign
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391105,446,147 - 105,591,466 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1105,446,147 - 105,591,402 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381105,518,421 - 105,663,741 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1105,518,422 - 105,663,677 (-)Ensemblmm10GRCm38
MGSCv371107,417,716 - 107,560,253 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361107,348,686 - 107,491,209 (-)NCBIMGSCv36mm8
Celera1108,376,436 - 108,513,016 (-)NCBICelera
Cytogenetic Map1E2.1NCBI
cM Map149.63NCBI
Pign
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540245,983,826 - 46,114,752 (-)Ensembl
ChiLan1.0NW_00495540245,979,577 - 46,114,634 (-)NCBIChiLan1.0ChiLan1.0
PIGN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21779,566,515 - 79,708,287 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11865,259,126 - 65,400,898 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01855,415,182 - 55,557,092 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11858,733,740 - 58,875,183 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1858,733,740 - 58,875,183 (-)EnsemblpanPan2panpan1.1
PIGN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1114,684,026 - 14,791,221 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl114,685,694 - 14,805,691 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha115,651,440 - 15,758,632 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0114,544,736 - 14,652,948 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl114,544,755 - 14,652,948 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1114,580,565 - 14,688,156 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0114,513,807 - 14,621,155 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0114,760,723 - 14,868,433 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pign
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494427,882,060 - 27,991,301 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364973,124,557 - 3,234,061 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364973,121,184 - 3,230,912 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1159,317,734 - 159,417,327 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11159,317,734 - 159,417,335 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21176,781,531 - 176,879,102 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIGN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11817,589,582 - 17,725,823 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1817,589,631 - 17,725,823 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660607,936,049 - 8,099,945 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pign
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247927,712,113 - 7,916,160 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247927,713,042 - 7,916,177 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pign
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11090,065,762 - 90,214,623 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pign
973 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:493
Count of miRNA genes:243
Interacting mature miRNAs:291
Transcripts:ENSRNOT00000020752
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134785618Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131244842148744906Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131228551734884386Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13308875548088755Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131244842147969993Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13600200837088115Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
2303031Bp326Blood pressure QTL 326arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131228551723516549Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13143736554Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131228551734884386Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13600200847359539Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13134785618Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat

Markers in Region
D13Got214  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81322,265,400 - 22,265,511 (+)Marker Load Pipeline
mRatBN7.21321,750,826 - 21,750,935 (+)MAPPERmRatBN7.2
Rnor_6.01325,603,293 - 25,603,403NCBIRnor6.0
Rnor_5.01330,765,846 - 30,765,956UniSTSRnor5.0
RGSC_v3.41311,776,297 - 11,776,407UniSTSRGSC3.4
Celera1321,628,425 - 21,628,535UniSTS
Cytogenetic Map13p13UniSTS
RH133180  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21321,662,061 - 21,662,264 (+)MAPPERmRatBN7.2
Rnor_6.01325,513,917 - 25,514,119NCBIRnor6.0
Rnor_5.01330,676,701 - 30,676,903UniSTSRnor5.0
RGSC_v3.41311,668,774 - 11,668,976UniSTSRGSC3.4
Celera1321,552,531 - 21,552,733UniSTS
Cytogenetic Map13p13UniSTS
BE109920  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21321,724,741 - 21,724,910 (+)MAPPERmRatBN7.2
Rnor_6.01325,576,690 - 25,576,858NCBIRnor6.0
Rnor_5.01330,739,846 - 30,740,014UniSTSRnor5.0
RGSC_v3.41311,731,988 - 11,732,156UniSTSRGSC3.4
Celera1321,615,249 - 21,615,417UniSTS
Cytogenetic Map13p13UniSTS
AU047833  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21321,665,905 - 21,666,152 (+)MAPPERmRatBN7.2
Rnor_6.01325,518,049 - 25,518,295NCBIRnor6.0
Rnor_5.01330,680,833 - 30,681,079UniSTSRnor5.0
RGSC_v3.41311,672,619 - 11,672,865UniSTSRGSC3.4
Celera1321,556,384 - 21,556,652UniSTS
Cytogenetic Map13p13UniSTS
ha2188  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21321,757,607 - 21,758,475 (+)MAPPERmRatBN7.2
Rnor_6.01325,610,041 - 25,610,908NCBIRnor6.0
Rnor_5.01330,772,594 - 30,773,461UniSTSRnor5.0
RGSC_v3.41311,783,080 - 11,783,947UniSTSRGSC3.4
Celera1321,635,208 - 21,636,075UniSTS
Cytogenetic Map13p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001100584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ976364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000020752   ⟹   ENSRNOP00000020752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1322,176,615 - 22,317,009 (-)Ensembl
mRatBN7.2 Ensembl1321,662,455 - 21,806,790 (-)Ensembl
Rnor_6.0 Ensembl1325,513,892 - 25,652,473 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107206   ⟹   ENSRNOP00000094088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1322,198,901 - 22,317,009 (-)Ensembl
mRatBN7.2 Ensembl1321,688,166 - 21,806,780 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112543   ⟹   ENSRNOP00000091372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1322,176,576 - 22,317,009 (-)Ensembl
mRatBN7.2 Ensembl1321,662,570 - 21,806,790 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117600   ⟹   ENSRNOP00000094630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1322,177,577 - 22,317,009 (-)Ensembl
mRatBN7.2 Ensembl1321,662,999 - 21,806,780 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000122872   ⟹   ENSRNOP00000104668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1322,189,300 - 22,317,009 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000161659   ⟹   ENSRNOP00000100454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1322,194,843 - 22,317,009 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000164181   ⟹   ENSRNOP00000101147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1322,176,615 - 22,321,379 (-)Ensembl
RefSeq Acc Id: NM_001100584   ⟹   NP_001094054
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,176,615 - 22,321,344 (-)NCBI
mRatBN7.21321,662,037 - 21,806,774 (-)NCBI
Dahl_SR_JrHsd1321,941,451 - 22,069,261 (-)NCBI
Lyon_Normotensive1321,940,861 - 22,068,668 (-)NCBI
Lyon_Hypertensive1321,954,708 - 22,082,514 (-)NCBI
F344_StmMcwi1321,861,480 - 21,989,052 (-)NCBI
Rnor_6.01325,513,892 - 25,656,785 (-)NCBI
Rnor_5.01330,676,676 - 30,740,322 (-)NCBI
Rnor_5.01330,779,066 - 30,820,235 (-)NCBI
RGSC_v3.41311,668,749 - 11,833,940 (-)RGD
Celera1321,552,506 - 21,677,358 (-)RGD
Sequence:
RefSeq Acc Id: NM_001429600   ⟹   NP_001416529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd1321,938,521 - 22,069,248 (-)NCBI
Lyon_Normotensive1321,937,931 - 22,068,655 (-)NCBI
Lyon_Hypertensive1321,951,778 - 22,082,501 (-)NCBI
F344_StmMcwi1321,858,550 - 21,989,039 (-)NCBI
RefSeq Acc Id: NM_001429601   ⟹   NP_001416530
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd1321,938,521 - 22,069,248 (-)NCBI
Lyon_Normotensive1321,937,931 - 22,068,655 (-)NCBI
Lyon_Hypertensive1321,951,778 - 22,082,501 (-)NCBI
F344_StmMcwi1321,858,550 - 21,989,039 (-)NCBI
RefSeq Acc Id: XM_039090846   ⟹   XP_038946774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,332 (-)NCBI
mRatBN7.21321,662,037 - 21,806,903 (-)NCBI
RefSeq Acc Id: XM_039090847   ⟹   XP_038946775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,177,571 - 22,321,332 (-)NCBI
mRatBN7.21321,662,986 - 21,806,907 (-)NCBI
RefSeq Acc Id: XM_063272409   ⟹   XP_063128479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,331 (-)NCBI
RefSeq Acc Id: XM_063272410   ⟹   XP_063128480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,331 (-)NCBI
RefSeq Acc Id: XM_063272411   ⟹   XP_063128481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,332 (-)NCBI
RefSeq Acc Id: XM_063272412   ⟹   XP_063128482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,329 (-)NCBI
RefSeq Acc Id: XM_063272413   ⟹   XP_063128483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,329 (-)NCBI
RefSeq Acc Id: XM_063272414   ⟹   XP_063128484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,332 (-)NCBI
RefSeq Acc Id: XM_063272415   ⟹   XP_063128485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,331 (-)NCBI
RefSeq Acc Id: XM_063272416   ⟹   XP_063128486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,321,329 (-)NCBI
RefSeq Acc Id: XM_063272417   ⟹   XP_063128487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,309,199 (-)NCBI
RefSeq Acc Id: XM_063272418   ⟹   XP_063128488
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,223,656 - 22,321,332 (-)NCBI
RefSeq Acc Id: XM_063272419   ⟹   XP_063128489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,173,670 - 22,267,908 (-)NCBI
RefSeq Acc Id: XR_010056922
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81322,213,215 - 22,321,332 (-)NCBI
RefSeq Acc Id: NP_001094054   ⟸   NM_001100584
- Sequence:
Ensembl Acc Id: ENSRNOP00000020752   ⟸   ENSRNOT00000020752
RefSeq Acc Id: XP_038946774   ⟸   XM_039090846
- Peptide Label: isoform X1
- UniProtKB: E9PTA5 (UniProtKB/TrEMBL),   A0A8I6AFB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946775   ⟸   XM_039090847
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AFB4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000094088   ⟸   ENSRNOT00000107206
Ensembl Acc Id: ENSRNOP00000091372   ⟸   ENSRNOT00000112543
Ensembl Acc Id: ENSRNOP00000094630   ⟸   ENSRNOT00000117600
RefSeq Acc Id: XP_063128484   ⟸   XM_063272414
- Peptide Label: isoform X1
- UniProtKB: E9PTA5 (UniProtKB/TrEMBL),   A0A8I6AFB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128481   ⟸   XM_063272411
- Peptide Label: isoform X1
- UniProtKB: E9PTA5 (UniProtKB/TrEMBL),   A0A8I6AFB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128480   ⟸   XM_063272410
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063128485   ⟸   XM_063272415
- Peptide Label: isoform X1
- UniProtKB: E9PTA5 (UniProtKB/TrEMBL),   A0A8I6AFB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128479   ⟸   XM_063272409
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063128486   ⟸   XM_063272416
- Peptide Label: isoform X1
- UniProtKB: E9PTA5 (UniProtKB/TrEMBL),   A0A8I6AFB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128483   ⟸   XM_063272413
- Peptide Label: isoform X1
- UniProtKB: E9PTA5 (UniProtKB/TrEMBL),   A0A8I6AFB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128482   ⟸   XM_063272412
- Peptide Label: isoform X1
- UniProtKB: E9PTA5 (UniProtKB/TrEMBL),   A0A8I6AFB4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128487   ⟸   XM_063272417
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063128489   ⟸   XM_063272419
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063128488   ⟸   XM_063272418
- Peptide Label: isoform X4
- UniProtKB: A0A8I6GKK6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000101147   ⟸   ENSRNOT00000164181
Ensembl Acc Id: ENSRNOP00000100454   ⟸   ENSRNOT00000161659
Ensembl Acc Id: ENSRNOP00000104668   ⟸   ENSRNOT00000122872
RefSeq Acc Id: NP_001416529   ⟸   NM_001429600
RefSeq Acc Id: NP_001416530   ⟸   NM_001429601
Protein Domains
GPI ethanolamine phosphate transferase 1 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PTA5-F1-model_v2 AlphaFold E9PTA5 1-931 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311346 AgrOrtholog
BioCyc Gene G2FUF-18633 BioCyc
Ensembl Genes ENSRNOG00000014866 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020752.8 UniProtKB/TrEMBL
  ENSRNOT00000107206.2 UniProtKB/TrEMBL
  ENSRNOT00000112543.2 UniProtKB/TrEMBL
  ENSRNOT00000117600.2 UniProtKB/TrEMBL
  ENSRNOT00000122872 ENTREZGENE
  ENSRNOT00000122872.1 UniProtKB/TrEMBL
  ENSRNOT00000161659.1 UniProtKB/TrEMBL
  ENSRNOT00000164181 ENTREZGENE
  ENSRNOT00000164181.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.720.10 UniProtKB/TrEMBL
InterPro Alkaline_phosphatase_core UniProtKB/TrEMBL
  GPI_EtnP_transferase_1 UniProtKB/TrEMBL
  GPI_EtnP_transferase_1_C UniProtKB/TrEMBL
  Phosphodiest/P_Trfase UniProtKB/TrEMBL
  PIGN_N UniProtKB/TrEMBL
KEGG Report rno:309051 UniProtKB/TrEMBL
NCBI Gene 309051 ENTREZGENE
PANTHER GPI ETHANOLAMINE PHOSPHATE TRANSFERASE 1 UniProtKB/TrEMBL
  PigN UniProtKB/TrEMBL
Pfam Phosphodiest UniProtKB/TrEMBL
  PigN UniProtKB/TrEMBL
PhenoGen Pign PhenoGen
RatGTEx ENSRNOG00000014866 RatGTEx
Superfamily-SCOP Alkaline_phosphatase_core UniProtKB/TrEMBL
UniProt A0A8I6AFB4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B1A6_RAT UniProtKB/TrEMBL
  A0A8I6GKK6 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LG47_RAT UniProtKB/TrEMBL
  A0ABK0LII5_RAT UniProtKB/TrEMBL
  A0ABK0LNZ1_RAT UniProtKB/TrEMBL
  A6JST6_RAT UniProtKB/TrEMBL
  E9PTA5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-09 Pign  phosphatidylinositol glycan anchor biosynthesis, class N  Pign  phosphatidylinositol glycan, class N  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Pign  phosphatidylinositol glycan, class N   Pign_predicted  phosphatidylinositol glycan, class N (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Pign_predicted  phosphatidylinositol glycan, class N (predicted)      Symbol and Name status set to approved 70820 APPROVED