Tex15 (testis expressed 15, meiosis and synapsis associated) - Rat Genome Database

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Gene: Tex15 (testis expressed 15, meiosis and synapsis associated) Rattus norvegicus
Analyze
Symbol: Tex15
Name: testis expressed 15, meiosis and synapsis associated
RGD ID: 1311266
Description: Predicted to be involved in meiotic nuclear division; regulation of double-strand break repair via homologous recombination; and transposable element silencing by piRNA-mediated DNA methylation. Predicted to act upstream of or within with a positive effect on DNA methylation-dependent constitutive heterochromatin formation. Predicted to act upstream of or within several processes, including homeostasis of number of cells within a tissue; homologous chromosome pairing at meiosis; and male genitalia development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in spermatogenic failure 25. Orthologous to human TEX15 (testis expressed 15, meiosis and synapsis associated); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC290803; testis expressed 15; testis expressed gene 15; testis-expressed protein 15; testis-expressed sequence 15 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81665,302,049 - 65,362,065 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1665,302,049 - 65,361,462 (-)EnsemblGRCr8
mRatBN7.21658,598,991 - 58,659,005 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,598,989 - 58,658,467 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1663,936,295 - 63,996,239 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01667,349,960 - 67,409,908 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01662,570,526 - 62,630,477 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01662,313,284 - 62,373,288 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1662,313,263 - 62,373,253 (-)Ensemblrn6Rnor6.0
Rnor_5.01661,973,992 - 62,033,389 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41662,371,381 - 62,385,448 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1656,634,538 - 56,648,602 (-)NCBICelera
RGSC_v3.11662,371,457 - 62,426,794 (-)NCBI
Cytogenetic Map16q12.3NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18283110  


Genomics

Comparative Map Data
Tex15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81665,302,049 - 65,362,065 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1665,302,049 - 65,361,462 (-)EnsemblGRCr8
mRatBN7.21658,598,991 - 58,659,005 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,598,989 - 58,658,467 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1663,936,295 - 63,996,239 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01667,349,960 - 67,409,908 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01662,570,526 - 62,630,477 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01662,313,284 - 62,373,288 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1662,313,263 - 62,373,253 (-)Ensemblrn6Rnor6.0
Rnor_5.01661,973,992 - 62,033,389 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41662,371,381 - 62,385,448 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1656,634,538 - 56,648,602 (-)NCBICelera
RGSC_v3.11662,371,457 - 62,426,794 (-)NCBI
Cytogenetic Map16q12.3NCBI
TEX15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38830,831,544 - 30,913,008 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl830,831,544 - 30,913,008 (-)Ensemblhg38GRCh38
GRCh37830,689,060 - 30,770,524 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36830,808,602 - 30,826,075 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34830,808,601 - 30,826,075NCBI
Celera829,649,146 - 29,666,582 (-)NCBICelera
Cytogenetic Map8p12NCBI
HuRef829,235,466 - 29,252,937 (-)NCBIHuRef
CHM1_1830,890,491 - 30,907,972 (-)NCBICHM1_1
T2T-CHM13v2.0831,112,556 - 31,194,025 (-)NCBIT2T-CHM13v2.0
Tex15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39834,006,712 - 34,082,531 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl834,006,766 - 34,075,610 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38833,516,689 - 33,592,503 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl833,516,738 - 33,585,582 (+)Ensemblmm10GRCm38
MGSCv37834,681,016 - 34,696,057 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36835,036,479 - 35,051,520 (+)NCBIMGSCv36mm8
Celera836,200,642 - 36,216,135 (+)NCBICelera
Cytogenetic Map8A4NCBI
cM Map820.59NCBI
Tex15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554637,298,030 - 7,360,971 (-)Ensembl
ChiLan1.0NW_0049554637,296,204 - 7,360,935 (-)NCBIChiLan1.0ChiLan1.0
TEX15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2749,403,951 - 49,467,960 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1825,120,146 - 25,184,139 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0830,145,628 - 30,232,903 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1827,334,129 - 27,421,154 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl827,334,129 - 27,420,049 (-)EnsemblpanPan2panpan1.1
TEX15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11633,423,546 - 33,517,458 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1633,423,876 - 33,515,452 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1633,882,573 - 33,976,660 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01635,449,398 - 35,543,325 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1635,448,620 - 35,541,328 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11633,548,113 - 33,641,995 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01634,122,468 - 34,216,450 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01634,241,104 - 34,335,002 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tex15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494356,636,584 - 56,695,650 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936792668,290 - 686,241 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936792668,290 - 727,197 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11554,210,139 - 54,277,609 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21561,580,113 - 61,648,703 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TEX15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1828,947,414 - 29,044,215 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl828,947,423 - 28,991,634 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605213,078,499 - 13,146,697 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tex15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478013,198,592 - 13,298,703 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478013,198,569 - 13,297,189 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tex15
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11353,437,183 - 53,451,590 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tex15
320 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:127
Count of miRNA genes:80
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000034325
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)163692878281928782Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162846870173468701Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat
631525Pia14Pristane induced arthritis QTL 144.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)166241446475736480Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)163236104377361043Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)163105803976058039Rat
7411648Foco22Food consumption QTL 22150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)165942871491442908Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)163439829479398294Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)163188527176885271Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
8694364Abfw7Abdominal fat weight QTL 712.220.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)165942871491442908Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
8694429Bw164Body weight QTL 16450.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)165942871491442908Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161773081872536785Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat

Markers in Region
AU022940  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21658,607,719 - 58,607,957 (+)MAPPERmRatBN7.2
Rnor_6.01662,322,015 - 62,322,252NCBIRnor6.0
Rnor_5.01661,982,723 - 61,982,960UniSTSRnor5.0
RGSC_v3.41662,380,112 - 62,380,349UniSTSRGSC3.4
Celera1656,643,266 - 56,643,503UniSTS
Cytogenetic Map16q12.3UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 5 50 149 64 63 32 46 32 2 239 114 4 135 78 91 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000034325   ⟹   ENSRNOP00000032440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1665,302,049 - 65,361,462 (-)Ensembl
mRatBN7.2 Ensembl1658,598,989 - 58,658,467 (-)Ensembl
Rnor_6.0 Ensembl1662,313,263 - 62,373,253 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107080   ⟹   ENSRNOP00000086267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1658,598,989 - 58,658,467 (-)Ensembl
RefSeq Acc Id: NM_001106087   ⟹   NP_001099557
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81665,302,049 - 65,361,462 (-)NCBI
mRatBN7.21658,598,991 - 58,658,402 (-)NCBI
Rnor_6.01662,313,284 - 62,327,351 (-)NCBI
Rnor_5.01661,973,992 - 62,033,389 (-)NCBI
RGSC_v3.41662,371,381 - 62,385,448 (-)RGD
Celera1656,634,538 - 56,648,602 (-)RGD
Sequence:
RefSeq Acc Id: XM_008771296   ⟹   XP_008769518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81665,302,049 - 65,362,065 (-)NCBI
mRatBN7.21658,598,991 - 58,659,005 (-)NCBI
Rnor_6.01662,313,284 - 62,373,288 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008771298   ⟹   XP_008769520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81665,302,049 - 65,342,380 (-)NCBI
mRatBN7.21658,598,991 - 58,641,538 (-)NCBI
Rnor_6.01662,313,284 - 62,355,285 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039094393   ⟹   XP_038950321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81665,302,049 - 65,362,065 (-)NCBI
mRatBN7.21658,598,991 - 58,659,005 (-)NCBI
RefSeq Acc Id: XM_063275238   ⟹   XP_063131308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81665,302,049 - 65,333,052 (-)NCBI
RefSeq Acc Id: NP_001099557   ⟸   NM_001106087
- UniProtKB: A0A8I6A4Z7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769518   ⟸   XM_008771296
- Peptide Label: isoform X1
- UniProtKB: D3ZYB8 (UniProtKB/TrEMBL),   A0A8I6A4Z7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769520   ⟸   XM_008771298
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A4Z7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000032440   ⟸   ENSRNOT00000034325
RefSeq Acc Id: XP_038950321   ⟸   XM_039094393
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A4Z7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000086267   ⟸   ENSRNOT00000107080
RefSeq Acc Id: XP_063131308   ⟸   XM_063275238
- Peptide Label: isoform X4
- UniProtKB: A6IVT3 (UniProtKB/TrEMBL)
Protein Domains
DUF3715   Testis expressed sequence

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700144
Promoter ID:EPDNEW_R10666
Type:single initiation site
Name:Tex15_1
Description:testis expressed 15, meiosis and synapsis associated
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01662,373,256 - 62,373,316EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311266 AgrOrtholog
BioCyc Gene G2FUF-11116 BioCyc
Ensembl Genes ENSRNOG00000007748 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000034325 ENTREZGENE
  ENSRNOT00000034325.7 UniProtKB/TrEMBL
InterPro DUF3715 UniProtKB/TrEMBL
  TEX15 UniProtKB/TrEMBL
  TEX15_dom UniProtKB/TrEMBL
KEGG Report rno:290803 UniProtKB/TrEMBL
NCBI Gene 290803 ENTREZGENE
PANTHER PTHR22380 UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 15 UniProtKB/TrEMBL
Pfam DUF3715 UniProtKB/TrEMBL
  TEX15 UniProtKB/TrEMBL
PhenoGen Tex15 PhenoGen
RatGTEx ENSRNOG00000007748 RatGTEx
Superfamily-SCOP ADP-ribosylation UniProtKB/TrEMBL
UniProt A0A8I6A4Z7 ENTREZGENE
  A6IVT3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZYB8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-03 Tex15  testis expressed 15, meiosis and synapsis associated  Tex15  testis expressed 15  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-24 Tex15  testis expressed 15  Tex15  testis expressed gene 15   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tex15  testis expressed gene 15   Tex15_predicted  testis expressed gene 15 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Tex15_predicted  testis expressed gene 15 (predicted)      Symbol and Name status set to approved 70820 APPROVED