TEX15 (testis expressed 15, meiosis and synapsis associated) - Rat Genome Database

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Gene: TEX15 (testis expressed 15, meiosis and synapsis associated) Chlorocebus sabaeus
Analyze
Symbol: TEX15
Name: testis expressed 15, meiosis and synapsis associated
RGD ID: 18615539
Description: INVOLVED IN DNA methylation-dependent heterochromatin formation (ortholog); fertilization (ortholog); homeostasis of number of cells within a tissue (ortholog); ASSOCIATED WITH genetic disease (ortholog); myoepithelioma (ortholog); spermatogenic failure 1 (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: testis-expressed protein 15; testis-expressed sequence 15 protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1828,947,414 - 29,044,215 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl828,947,423 - 28,991,634 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605213,078,499 - 13,146,697 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TEX15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1828,947,414 - 29,044,215 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl828,947,423 - 28,991,634 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605213,078,499 - 13,146,697 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TEX15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38830,831,544 - 30,913,008 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl830,831,544 - 30,913,008 (-)EnsemblGRCh38hg38GRCh38
GRCh37830,689,060 - 30,770,524 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36830,808,602 - 30,826,075 (-)NCBINCBI36Build 36hg18NCBI36
Build 34830,808,601 - 30,826,075NCBI
Celera829,649,146 - 29,666,582 (-)NCBICelera
Cytogenetic Map8p12NCBI
HuRef829,235,466 - 29,252,937 (-)NCBIHuRef
CHM1_1830,890,491 - 30,907,972 (-)NCBICHM1_1
T2T-CHM13v2.0831,112,556 - 31,194,025 (-)NCBIT2T-CHM13v2.0
Tex15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39834,006,712 - 34,082,531 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl834,006,766 - 34,075,610 (+)EnsemblGRCm39 Ensembl
GRCm38833,516,689 - 33,592,503 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl833,516,738 - 33,585,582 (+)EnsemblGRCm38mm10GRCm38
MGSCv37834,681,016 - 34,696,057 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36835,036,479 - 35,051,520 (+)NCBIMGSCv36mm8
Celera836,200,642 - 36,216,135 (+)NCBICelera
Cytogenetic Map8A4NCBI
cM Map820.59NCBI
Tex15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81665,302,049 - 65,362,065 (-)NCBIGRCr8
mRatBN7.21658,598,991 - 58,659,005 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1658,598,989 - 58,658,467 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1663,936,295 - 63,996,239 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01667,349,960 - 67,409,908 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01662,570,526 - 62,630,477 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01662,313,284 - 62,373,288 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1662,313,263 - 62,373,253 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01661,973,992 - 62,033,389 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41662,371,381 - 62,385,448 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11662,371,457 - 62,426,794 (-)NCBI
Celera1656,634,538 - 56,648,602 (-)NCBICelera
Cytogenetic Map16q12.3NCBI
Tex15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554637,298,030 - 7,360,971 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554637,296,204 - 7,360,935 (-)NCBIChiLan1.0ChiLan1.0
TEX15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2749,403,951 - 49,467,960 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1825,120,146 - 25,184,139 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0830,145,628 - 30,232,903 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1827,334,129 - 27,421,154 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl827,334,129 - 27,420,049 (-)Ensemblpanpan1.1panPan2
TEX15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11633,423,546 - 33,517,458 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1633,423,876 - 33,515,452 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1633,882,573 - 33,976,660 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01635,449,398 - 35,543,325 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1635,448,620 - 35,541,328 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11633,548,113 - 33,641,995 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01634,122,468 - 34,216,450 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01634,241,104 - 34,335,002 (+)NCBIUU_Cfam_GSD_1.0
Tex15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494356,636,584 - 56,695,650 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936792668,290 - 686,241 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936792668,290 - 727,197 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEX15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11554,210,139 - 54,277,609 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21561,580,113 - 61,648,703 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Tex15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478013,198,592 - 13,298,703 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478013,198,569 - 13,297,189 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium
Low 9 38
Below cutoff 4 8 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000013914   ⟹   ENSCSAP00000011898
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl828,947,423 - 28,991,634 (-)Ensembl
RefSeq Acc Id: XM_007962107   ⟹   XP_007960298
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1828,951,505 - 29,044,215 (-)NCBI
Vero_WHO_p1.0NW_02366605213,078,499 - 13,146,697 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007960298 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000011898.1
Reference Protein Sequences
RefSeq Acc Id: XP_007960298   ⟸   XM_007962107
- UniProtKB: A0A0D9RTF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000011898   ⟸   ENSCSAT00000013914


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015819 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013914.1 UniProtKB/TrEMBL
InterPro DUF3715 UniProtKB/TrEMBL
  TEX15 UniProtKB/TrEMBL
  TEX15_dom UniProtKB/TrEMBL
NCBI Gene TEX15 ENTREZGENE
PANTHER PTHR22380 UniProtKB/TrEMBL
  TESTIS-EXPRESSED PROTEIN 15 UniProtKB/TrEMBL
Pfam DUF3715 UniProtKB/TrEMBL
  TEX15 UniProtKB/TrEMBL
Superfamily-SCOP ADP-ribosylation UniProtKB/TrEMBL
UniProt A0A0D9RTF9 ENTREZGENE, UniProtKB/TrEMBL