Zfp385b (zinc finger protein 385B) - Rat Genome Database

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Gene: Zfp385b (zinc finger protein 385B) Rattus norvegicus
Analyze
Symbol: Zfp385b
Name: zinc finger protein 385B
RGD ID: 1311181
Description: Predicted to enable p53 binding activity. Predicted to be involved in intrinsic apoptotic signaling pathway by p53 class mediator. Predicted to be active in nucleus. Orthologous to human ZNF385B (zinc finger protein 385B); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC311137; Zfp533; zinc finger protein 533
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8382,762,387 - 83,140,856 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl382,762,387 - 83,084,615 (-)EnsemblGRCr8
mRatBN7.2362,355,182 - 62,640,417 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl362,355,196 - 62,640,510 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx365,710,172 - 65,982,563 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0374,293,843 - 74,566,231 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0372,061,795 - 72,333,469 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0364,269,817 - 64,556,084 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl364,269,817 - 64,543,100 (-)Ensemblrn6Rnor6.0
Rnor_5.0370,838,018 - 71,110,119 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4360,099,019 - 60,372,248 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera361,837,486 - 62,110,326 (-)NCBICelera
RGSC_v3.1359,995,595 - 60,103,357 (-)NCBI
Cytogenetic Map3q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromobenzene  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dibenz[a,h]anthracene  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
L-methionine  (ISO)
lipopolysaccharide  (ISO)
mercury dibromide  (ISO)
methidathion  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
nickel atom  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
parathion  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
sodium arsenite  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
fibrillar center  (IEA,ISO)
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22945289  


Genomics

Comparative Map Data
Zfp385b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8382,762,387 - 83,140,856 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl382,762,387 - 83,084,615 (-)EnsemblGRCr8
mRatBN7.2362,355,182 - 62,640,417 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl362,355,196 - 62,640,510 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx365,710,172 - 65,982,563 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0374,293,843 - 74,566,231 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0372,061,795 - 72,333,469 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0364,269,817 - 64,556,084 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl364,269,817 - 64,543,100 (-)Ensemblrn6Rnor6.0
Rnor_5.0370,838,018 - 71,110,119 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4360,099,019 - 60,372,248 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera361,837,486 - 62,110,326 (-)NCBICelera
RGSC_v3.1359,995,595 - 60,103,357 (-)NCBI
Cytogenetic Map3q24NCBI
ZNF385B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382179,441,982 - 179,861,612 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2179,441,982 - 179,861,612 (-)Ensemblhg38GRCh38
GRCh372180,306,709 - 180,726,339 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362180,014,954 - 180,434,312 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342180,132,225 - 180,436,275NCBI
Celera2173,901,060 - 174,320,479 (-)NCBICelera
Cytogenetic Map2q31.2-q31.3NCBI
HuRef2172,158,474 - 172,578,207 (-)NCBIHuRef
CHM1_12180,312,547 - 180,732,176 (-)NCBICHM1_1
T2T-CHM13v2.02179,925,075 - 180,344,841 (-)NCBIT2T-CHM13v2.0
Zfp385b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39277,240,966 - 77,648,050 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl277,240,978 - 77,649,983 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38277,410,622 - 77,817,706 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl277,410,634 - 77,819,639 (-)Ensemblmm10GRCm38
MGSCv37277,248,679 - 77,654,873 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36277,211,939 - 77,617,655 (-)NCBIMGSCv36mm8
Celera279,067,015 - 79,376,458 (-)NCBICelera
Cytogenetic Map2C3NCBI
cM Map245.94NCBI
Znf385b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540317,292,692 - 17,583,367 (+)Ensembl
ChiLan1.0NW_00495540317,196,597 - 17,583,050 (+)NCBIChiLan1.0ChiLan1.0
ZNF385B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21382,088,748 - 82,509,875 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B82,103,722 - 82,524,850 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B66,696,635 - 67,115,011 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B184,400,194 - 184,727,442 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B184,400,205 - 184,726,522 (-)EnsemblpanPan2panpan1.1
ZNF385B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13622,900,669 - 23,248,779 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3622,918,832 - 23,203,215 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3622,921,889 - 23,307,831 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03623,060,626 - 23,447,497 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3623,077,754 - 23,364,016 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13623,155,905 - 23,541,821 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03623,118,964 - 23,504,743 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03623,241,712 - 23,627,768 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Znf385b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303139,916,891 - 140,190,953 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365098,470,777 - 8,744,201 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365098,470,696 - 8,744,880 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF385B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1585,045,799 - 85,367,021 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11585,041,947 - 85,469,112 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21594,611,438 - 95,034,120 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF385B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11064,965,414 - 65,287,001 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1064,965,353 - 65,087,689 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040134,171,116 - 134,586,469 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf385b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248441,285,173 - 1,628,668 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248441,285,260 - 1,721,369 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Znf385b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1554,749,623 - 55,050,958 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zfp385b
3265 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:144
Count of miRNA genes:110
Interacting mature miRNAs:130
Transcripts:ENSRNOT00000025803
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)35986366387321459Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)35986366387321459Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)35986366383358329Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1582249Bw77Body weight QTL 773.20.0025epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)37359251285062403Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
D3Got224  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2362,538,412 - 62,538,596 (+)MAPPERmRatBN7.2
Rnor_6.0364,454,052 - 64,454,235NCBIRnor6.0
Rnor_5.0371,021,333 - 71,021,516UniSTSRnor5.0
RGSC_v3.4360,282,566 - 60,282,749UniSTSRGSC3.4
Celera362,020,775 - 62,020,958UniSTS
Cytogenetic Map3q23UniSTS
RH138395  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2362,364,993 - 62,365,179 (+)MAPPERmRatBN7.2
Rnor_6.0364,279,613 - 64,279,798NCBIRnor6.0
Rnor_5.0370,847,814 - 70,847,999UniSTSRnor5.0
RGSC_v3.4360,108,815 - 60,109,000UniSTSRGSC3.4
Celera361,847,423 - 61,847,608UniSTS
Cytogenetic Map3q23UniSTS
RH140647  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map5824.21UniSTS
Cytogenetic Map3q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 146 91 90 59 29 59 6 293 129 11 123 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000025803   ⟹   ENSRNOP00000025803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl382,762,387 - 83,034,608 (-)Ensembl
mRatBN7.2 Ensembl362,355,196 - 62,627,443 (-)Ensembl
Rnor_6.0 Ensembl364,269,817 - 64,543,100 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000067452   ⟹   ENSRNOP00000063662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl362,522,822 - 62,640,510 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089065   ⟹   ENSRNOP00000072967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl382,762,387 - 82,854,737 (-)Ensembl
mRatBN7.2 Ensembl362,355,196 - 62,447,485 (-)Ensembl
Rnor_6.0 Ensembl364,269,817 - 64,364,101 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103102   ⟹   ENSRNOP00000081615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl362,355,196 - 62,462,823 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104251   ⟹   ENSRNOP00000080212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl382,762,387 - 82,880,444 (-)Ensembl
mRatBN7.2 Ensembl362,355,196 - 62,553,998 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118734   ⟹   ENSRNOP00000076914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl382,762,387 - 83,084,615 (-)Ensembl
mRatBN7.2 Ensembl362,355,196 - 62,640,510 (-)Ensembl
RefSeq Acc Id: NM_001107736   ⟹   NP_001101206
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,762,387 - 83,034,608 (-)NCBI
mRatBN7.2362,355,196 - 62,627,443 (-)NCBI
Rnor_6.0364,269,817 - 64,543,100 (-)NCBI
Rnor_5.0370,838,018 - 71,110,119 (-)NCBI
RGSC_v3.4360,099,019 - 60,372,248 (-)RGD
Celera361,837,486 - 62,110,326 (-)RGD
Sequence:
RefSeq Acc Id: XM_017591700   ⟹   XP_017447189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 83,140,847 (-)NCBI
mRatBN7.2362,355,182 - 62,640,417 (-)NCBI
Rnor_6.0364,270,822 - 64,556,084 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591701   ⟹   XP_017447190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 83,140,856 (-)NCBI
mRatBN7.2362,355,182 - 62,640,417 (-)NCBI
Rnor_6.0364,270,822 - 64,556,084 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591702   ⟹   XP_017447191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 83,140,852 (-)NCBI
mRatBN7.2362,355,182 - 62,640,417 (-)NCBI
Rnor_6.0364,270,822 - 64,556,084 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017591703   ⟹   XP_017447192
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 83,035,431 (-)NCBI
mRatBN7.2362,356,478 - 62,634,297 (-)NCBI
Rnor_6.0364,270,822 - 64,545,024 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039104860   ⟹   XP_038960788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 82,854,587 (-)NCBI
mRatBN7.2362,356,478 - 62,447,369 (-)NCBI
RefSeq Acc Id: XM_039104861   ⟹   XP_038960789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 82,880,306 (-)NCBI
mRatBN7.2362,356,478 - 62,473,427 (-)NCBI
RefSeq Acc Id: XM_039104863   ⟹   XP_038960791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 82,961,702 (-)NCBI
mRatBN7.2362,356,478 - 62,558,622 (-)NCBI
RefSeq Acc Id: XM_039104864   ⟹   XP_038960792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 82,874,329 (-)NCBI
mRatBN7.2362,355,182 - 62,467,177 (-)NCBI
RefSeq Acc Id: XM_039104865   ⟹   XP_038960793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 82,869,971 (-)NCBI
mRatBN7.2362,355,182 - 62,462,821 (-)NCBI
RefSeq Acc Id: XM_063283636   ⟹   XP_063139706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 83,140,850 (-)NCBI
RefSeq Acc Id: XM_063283637   ⟹   XP_063139707
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 83,126,236 (-)NCBI
RefSeq Acc Id: XM_063283638   ⟹   XP_063139708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 82,854,692 (-)NCBI
RefSeq Acc Id: XM_063283639   ⟹   XP_063139709
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 82,880,312 (-)NCBI
RefSeq Acc Id: XM_063283640   ⟹   XP_063139710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 82,961,740 (-)NCBI
RefSeq Acc Id: XM_063283641   ⟹   XP_063139711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 82,874,306 (-)NCBI
RefSeq Acc Id: XM_063283642   ⟹   XP_063139712
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8382,763,392 - 82,961,688 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001101206 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420283 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420284 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420286 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420287 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420288 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420289 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420290 (Get FASTA)   NCBI Sequence Viewer  
  NP_001420291 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447189 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447190 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447191 (Get FASTA)   NCBI Sequence Viewer  
  XP_017447192 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960788 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960789 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960791 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960792 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960793 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139706 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139707 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139708 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139709 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139710 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139711 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139712 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL79244 (Get FASTA)   NCBI Sequence Viewer  
  EDL79245 (Get FASTA)   NCBI Sequence Viewer  
  EDL79246 (Get FASTA)   NCBI Sequence Viewer  
  EDL79247 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025803
  ENSRNOP00000025803.5
  ENSRNOP00000072967
  ENSRNOP00000072967.3
  ENSRNOP00000076914
  ENSRNOP00000076914.2
  ENSRNOP00000080212
  ENSRNOP00000080212.2
RefSeq Acc Id: NP_001101206   ⟸   NM_001107736
- UniProtKB: D3ZHY2 (UniProtKB/TrEMBL),   A6HMJ4 (UniProtKB/TrEMBL),   A0A0G2K4A6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447191   ⟸   XM_017591702
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017447190   ⟸   XM_017591701
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K4A6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447189   ⟸   XM_017591700
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017447192   ⟸   XM_017591703
- Peptide Label: isoform X9
- UniProtKB: A0A0G2K4A6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072967   ⟸   ENSRNOT00000089065
Ensembl Acc Id: ENSRNOP00000025803   ⟸   ENSRNOT00000025803
RefSeq Acc Id: XP_038960792   ⟸   XM_039104864
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038960793   ⟸   XM_039104865
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038960791   ⟸   XM_039104863
- Peptide Label: isoform X10
- UniProtKB: A0A8I6G493 (UniProtKB/TrEMBL),   A0A0G2K4A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960789   ⟸   XM_039104861
- Peptide Label: isoform X6
- UniProtKB: A0A0G2K4A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960788   ⟸   XM_039104860
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZTA2 (UniProtKB/TrEMBL),   A0A0G2K4A6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080212   ⟸   ENSRNOT00000104251
Ensembl Acc Id: ENSRNOP00000063662   ⟸   ENSRNOT00000067452
Ensembl Acc Id: ENSRNOP00000081615   ⟸   ENSRNOT00000103102
Ensembl Acc Id: ENSRNOP00000076914   ⟸   ENSRNOT00000118734
RefSeq Acc Id: XP_063139706   ⟸   XM_063283636
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063139707   ⟸   XM_063283637
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063139710   ⟸   XM_063283640
- Peptide Label: isoform X11
- UniProtKB: A0A0G2K4A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139712   ⟸   XM_063283642
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063139709   ⟸   XM_063283639
- Peptide Label: isoform X8
- UniProtKB: A0A0G2K4A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139711   ⟸   XM_063283641
- Peptide Label: isoform X12
- UniProtKB: A0A0G2K4A6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139708   ⟸   XM_063283638
- Peptide Label: isoform X7
- UniProtKB: A0A0G2K4A6 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K4A6-F1-model_v2 AlphaFold A0A0G2K4A6 1-454 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311181 AgrOrtholog
BioCyc Gene G2FUF-49263 BioCyc
Ensembl Genes ENSRNOG00000019065 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025803 ENTREZGENE
  ENSRNOT00000025803.8 UniProtKB/TrEMBL
  ENSRNOT00000089065 ENTREZGENE
  ENSRNOT00000089065.3 UniProtKB/TrEMBL
  ENSRNOT00000104251 ENTREZGENE
  ENSRNOT00000104251.2 UniProtKB/TrEMBL
  ENSRNOT00000118734 ENTREZGENE
  ENSRNOT00000118734.2 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf385 UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
  Znf_U1 UniProtKB/TrEMBL
KEGG Report rno:311137 UniProtKB/TrEMBL
NCBI Gene 311137 ENTREZGENE
PANTHER DOUBLE-STRANDED RNA-BINDING ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 385B UniProtKB/TrEMBL
Pfam zf-met UniProtKB/TrEMBL
PhenoGen Zfp385b PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019065 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
  ZnF_U1 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0G2K4A6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y545 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZTA2 ENTREZGENE
  A0A8I6G493 ENTREZGENE, UniProtKB/TrEMBL
  A6HMJ3 ENTREZGENE, UniProtKB/TrEMBL
  A6HMJ4 ENTREZGENE, UniProtKB/TrEMBL
  A6HMJ5 ENTREZGENE, UniProtKB/TrEMBL
  D3ZHY2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-05-08 Zfp385b  zinc finger protein 385B  Zfp533  zinc finger protein 533   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Zfp533  zinc finger protein 533   Zfp533_predicted  zinc finger protein 533 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Zfp533_predicted  zinc finger protein 533 (predicted)      Symbol and Name status set to approved 70820 APPROVED