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Gene: Lgi3 (leucine-rich repeat LGI family, member 3) Rattus norvegicus

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Symbol:

Lgi3

Name:

leucine-rich repeat LGI family, member 3

RGD ID:

1311079

Description:

Predicted to be involved in regulation of exocytosis. Predicted to be located in extracellular space and juxtaparanode region of axon. Predicted to be active in synaptic vesicle. Orthologous to human LGI3 (leucine rich repeat LGI family member 3); INTERACTS WITH 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

leucine-rich repeat LGI family member 3; LOC306013

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	52,015,317 - 52,022,445 (+)	NCBI		GRCr8
mRatBN7.2	15	45,605,611 - 45,612,739 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	45,605,611 - 45,612,739 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	49,723,477 - 49,730,605 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	50,834,982 - 50,842,110 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	47,694,274 - 47,701,402 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	52,220,578 - 52,227,706 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	52,220,578 - 52,227,706 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	55,944,095 - 55,951,223 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	50,932,145 - 50,939,273 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	50,948,080 - 50,955,053 (+)	NCBI
Celera	15	45,284,005 - 45,291,134 (+)	NCBI		Celera
Cytogenetic Map	15	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lgi3	Rat	Conotruncal Cardiac Defects		ISO	LGI3 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Conotruncal heart malformations	ClinVar	PMID:28492532
Lgi3	Rat	INTELLECTUAL DEVELOPMENTAL DISORDER WITH MUSCLE TONE ABNORMALITIES AND DISTAL SKELETAL DEFECTS		ISO	LGI3 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lgi3	Rat	INTELLECTUAL DEVELOPMENTAL DISORDER WITH MUSCLE TONE ABNORMALITIES AND DISTAL SKELETAL DEFECTS		ISO	LGI3 (Homo sapiens)	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lgi3	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Lgi3 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of LGI3 mRNA	CTD	PMID:22206623
Lgi3	Rat	17beta-estradiol	increases expression	ISO	Lgi3 (Mus musculus)	6480464	Estradiol results in increased expression of LGI3 mRNA	CTD	PMID:19484750
Lgi3	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	Lgi3 (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in decreased expression of LGI3 mRNA	CTD	PMID:19770486
Lgi3	Rat	3,4-methylenedioxymethamphetamine	increases expression	ISO	Lgi3 (Mus musculus)	6480464	N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of LGI3 mRNA	CTD	PMID:20188158
Lgi3	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Lgi3 (Mus musculus)	6480464	bisphenol S results in increased expression of LGI3 mRNA	CTD	PMID:30951980
Lgi3	Rat	4,4'-sulfonyldiphenol	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of LGI3 mRNA	CTD	PMID:36041667
Lgi3	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of LGI3 mRNA	CTD	PMID:24780913 and PMID:25825206
Lgi3	Rat	actinomycin D	multiple interactions	ISO	LGI3 (Homo sapiens)	6480464	[Dactinomycin co-treated with nutlin 3] results in increased expression of LGI3 mRNA	CTD	PMID:38460933
Lgi3	Rat	aflatoxin B1	decreases expression	ISO	Lgi3 (Mus musculus)	6480464	Aflatoxin B1 results in decreased expression of LGI3 mRNA	CTD	PMID:19770486
Lgi3	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of LGI3 mRNA	CTD	PMID:38685447
Lgi3	Rat	arsenous acid	decreases expression	ISO	LGI3 (Homo sapiens)	6480464	Arsenic Trioxide results in decreased expression of LGI3 mRNA	CTD	PMID:20458559
Lgi3	Rat	benzo[a]pyrene	decreases expression	ISO	Lgi3 (Mus musculus)	6480464	Benzo(a)pyrene results in decreased expression of LGI3 mRNA	CTD	PMID:19770486
Lgi3	Rat	benzo[a]pyrene	decreases methylation	ISO	LGI3 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of LGI3 3' UTR	CTD	PMID:27901495
Lgi3	Rat	benzo[a]pyrene	increases methylation	ISO	LGI3 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of LGI3 exon	CTD	PMID:27901495
Lgi3	Rat	benzo[a]pyrene	affects methylation	ISO	LGI3 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of LGI3 promoter	CTD	PMID:27901495
Lgi3	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of LGI3 mRNA	CTD	PMID:25181051
Lgi3	Rat	bisphenol A	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of LGI3 mRNA	CTD	PMID:36041667
Lgi3	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of LGI3 mRNA	CTD	PMID:30816183 and PMID:32528016
Lgi3	Rat	bisphenol A	increases expression	ISO	Lgi3 (Mus musculus)	6480464	bisphenol A results in increased expression of LGI3 mRNA	CTD	PMID:30951980
Lgi3	Rat	bisphenol F	increases expression	ISO	Lgi3 (Mus musculus)	6480464	bisphenol F results in increased expression of LGI3 mRNA	CTD	PMID:30951980
Lgi3	Rat	bisphenol F	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of LGI3 mRNA	CTD	PMID:36041667
Lgi3	Rat	cadmium dichloride	decreases methylation	EXP		6480464	Cadmium Chloride results in decreased methylation of LGI3 promoter	CTD	PMID:22457795
Lgi3	Rat	carbon nanotube	decreases expression	ISO	Lgi3 (Mus musculus)	6480464	Nanotubes more ...	CTD	PMID:25554681
Lgi3	Rat	copper atom	increases expression	EXP		6480464	Copper deficiency results in increased expression of LGI3 mRNA	CTD	PMID:26033743
Lgi3	Rat	copper(0)	increases expression	EXP		6480464	Copper deficiency results in increased expression of LGI3 mRNA	CTD	PMID:26033743
Lgi3	Rat	Cuprizon	decreases expression	EXP		6480464	Cuprizone results in decreased expression of LGI3 mRNA	CTD	PMID:27523638
Lgi3	Rat	diarsenic trioxide	decreases expression	ISO	LGI3 (Homo sapiens)	6480464	Arsenic Trioxide results in decreased expression of LGI3 mRNA	CTD	PMID:20458559
Lgi3	Rat	dioxygen	multiple interactions	ISO	Lgi3 (Mus musculus)	6480464	[NFE2L2 protein affects the susceptibility to Oxygen] which affects the expression of LGI3 mRNA	CTD	PMID:30529165
Lgi3	Rat	diquat	decreases expression	ISO	Lgi3 (Mus musculus)	6480464	Diquat results in decreased expression of LGI3 mRNA	CTD	PMID:36851058
Lgi3	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of LGI3 mRNA	CTD	PMID:29391264
Lgi3	Rat	ethanol	multiple interactions	ISO	Lgi3 (Mus musculus)	6480464	[Carbon Tetrachloride co-treated with Ethanol] results in increased expression of LGI3 mRNA	CTD	PMID:30517762
Lgi3	Rat	folic acid	decreases expression	ISO	Lgi3 (Mus musculus)	6480464	Folic Acid results in decreased expression of LGI3 mRNA	CTD	PMID:25629700
Lgi3	Rat	furan	increases expression	EXP		6480464	furan results in increased expression of LGI3 mRNA	CTD	PMID:27387713
Lgi3	Rat	genistein	decreases expression	ISO	Lgi3 (Mus musculus)	6480464	Genistein results in decreased expression of LGI3 mRNA	CTD	PMID:32186404
Lgi3	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of LGI3 mRNA	CTD	PMID:22061828
Lgi3	Rat	GW 4064	decreases expression	ISO	Lgi3 (Mus musculus)	6480464	GW 4064 results in decreased expression of LGI3 mRNA	CTD	PMID:26655953
Lgi3	Rat	hydrogen sulfide	increases expression	ISO	Lgi3 (Mus musculus)	6480464	Hydrogen Sulfide results in increased expression of LGI3 protein	CTD	PMID:29932956
Lgi3	Rat	methamphetamine	decreases expression	EXP		6480464	Methamphetamine results in decreased expression of LGI3 mRNA	CTD	PMID:19564919
Lgi3	Rat	methotrexate	increases expression	ISO	LGI3 (Homo sapiens)	6480464	Methotrexate results in increased expression of LGI3 mRNA	CTD	PMID:24449571
Lgi3	Rat	nitrofen	increases expression	EXP		6480464	nitrofen results in increased expression of LGI3 mRNA	CTD	PMID:33484710
Lgi3	Rat	Nutlin-3	multiple interactions	ISO	LGI3 (Homo sapiens)	6480464	[Dactinomycin co-treated with nutlin 3] results in increased expression of LGI3 mRNA	CTD	PMID:38460933
Lgi3	Rat	paraquat	decreases expression	EXP		6480464	Paraquat results in decreased expression of LGI3 mRNA	CTD	PMID:32680482
Lgi3	Rat	pirinixic acid	increases expression	ISO	Lgi3 (Mus musculus)	6480464	pirinixic acid results in increased expression of LGI3 mRNA	CTD	PMID:20813756
Lgi3	Rat	resveratrol	multiple interactions	ISO	LGI3 (Homo sapiens)	6480464	[Plant Extracts co-treated with Resveratrol] results in decreased expression of LGI3 mRNA	CTD	PMID:23557933
Lgi3	Rat	sotorasib	multiple interactions	ISO	LGI3 (Homo sapiens)	6480464	[sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in decreased expression of LGI3 mRNA	CTD	PMID:36139627
Lgi3	Rat	sulforaphane	decreases expression	ISO	Lgi3 (Mus musculus)	6480464	sulforaphane results in decreased expression of LGI3 mRNA	CTD	PMID:30529165
Lgi3	Rat	tetrachloromethane	multiple interactions	ISO	Lgi3 (Mus musculus)	6480464	[Carbon Tetrachloride co-treated with Ethanol] results in increased expression of LGI3 mRNA	CTD	PMID:30517762
Lgi3	Rat	titanium dioxide	increases expression	ISO	Lgi3 (Mus musculus)	6480464	titanium dioxide results in increased expression of LGI3 mRNA	CTD	PMID:23557971
Lgi3	Rat	trametinib	multiple interactions	ISO	LGI3 (Homo sapiens)	6480464	[sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in decreased expression of LGI3 mRNA	CTD	PMID:36139627
Lgi3	Rat	tremolite asbestos	decreases expression	ISO	Lgi3 (Mus musculus)	6480464	tremolite results in decreased expression of LGI3 mRNA	CTD	PMID:29279043
Lgi3	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of LGI3 mRNA	CTD	PMID:33387578
Lgi3	Rat	valproic acid	increases methylation	ISO	LGI3 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of LGI3 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lgi3	Rat	regulation of exocytosis	involved_in	ISO	Lgi3 (Mus musculus)	1624291	PMID:18760330	RGD	PMID:18760330
Lgi3	Rat	regulation of exocytosis	involved_in	IBA	MGI:2182619 and PANTHER:PTN002808812	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Lgi3	Rat	regulation of exocytosis	involved_in	IEA	UniProtKB:Q8K406 and ensembl:ENSMUSP00000046705	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lgi3	Rat	extracellular region	located_in	IEA	UniProtKB-KW:KW-0964	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Lgi3	Rat	extracellular region	located_in	IEA	UniProtKB-SubCell:SL-0243	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Lgi3	Rat	extracellular space	located_in	ISO	LGI3 (Homo sapiens)	1624291	PMID:35948005	RGD	PMID:35948005
Lgi3	Rat	extracellular space	located_in	IEA	UniProtKB:Q8N145 and ensembl:ENSP00000302297	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lgi3	Rat	juxtaparanode region of axon	located_in	ISO	Lgi3 (Mus musculus)	1624291	PMID:35948005	RGD	PMID:35948005
Lgi3	Rat	juxtaparanode region of axon	located_in	IEA	UniProtKB:Q8K406 and ensembl:ENSMUSP00000046705	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lgi3	Rat	synaptic vesicle	located_in	ISO	Lgi3 (Mus musculus)	1624291	PMID:18760330	RGD	PMID:18760330
Lgi3	Rat	synaptic vesicle	located_in	IEA	UniProtKB:Q8K406 and ensembl:ENSMUSP00000046705	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Lgi3	Rat	synaptic vesicle	is_active_in	IBA	MGI:2182619 and PANTHER:PTN002808812	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lgi3	Rat	protein binding	enables	ISO	Lgi3 (Mus musculus)	1624291	UniProtKB:O35526 more ...	RGD	PMID:18760330 and PMID:25707359

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:17387609	PMID:18760330

Lgi3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	52,015,317 - 52,022,445 (+)	NCBI		GRCr8
mRatBN7.2	15	45,605,611 - 45,612,739 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	45,605,611 - 45,612,739 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	49,723,477 - 49,730,605 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	50,834,982 - 50,842,110 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	47,694,274 - 47,701,402 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	52,220,578 - 52,227,706 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	52,220,578 - 52,227,706 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	55,944,095 - 55,951,223 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	50,932,145 - 50,939,273 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	50,948,080 - 50,955,053 (+)	NCBI
Celera	15	45,284,005 - 45,291,134 (+)	NCBI		Celera
Cytogenetic Map	15	p11	NCBI

LGI3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	22,146,830 - 22,156,806 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	22,146,830 - 22,157,084 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	22,004,343 - 22,014,319 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	22,060,288 - 22,070,289 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	22,060,289 - 22,070,289	NCBI
Celera	8	20,966,267 - 20,976,328 (-)	NCBI		Celera
Cytogenetic Map	8	p21.3	NCBI
HuRef	8	20,546,619 - 20,556,646 (-)	NCBI		HuRef
CHM1_1	8	22,206,009 - 22,216,003 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	22,420,778 - 22,430,751 (-)	NCBI		T2T-CHM13v2.0

Lgi3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	70,765,982 - 70,775,764 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	70,768,125 - 70,775,764 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	70,528,547 - 70,538,324 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	70,530,685 - 70,538,324 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	70,930,628 - 70,938,131 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	69,265,950 - 69,273,402 (+)	NCBI		MGSCv36	mm8
Celera	14	68,072,371 - 68,079,876 (+)	NCBI		Celera
Cytogenetic Map	14	D2	NCBI
cM Map	14	36.32	NCBI

Lgi3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	45,634,237 - 45,644,172 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	45,634,237 - 45,644,172 (-)	NCBI	ChiLan1.0	ChiLan1.0

LGI3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	40,648,656 - 40,658,653 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	16,373,854 - 16,383,840 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	21,391,765 - 21,401,770 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	18,330,815 - 18,340,403 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	18,330,815 - 18,340,403 (-)	Ensembl	panpan1.1		panPan2

LGI3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	35,097,464 - 35,105,930 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	35,097,566 - 35,105,940 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	35,687,040 - 35,695,518 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	35,308,828 - 35,317,292 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	35,308,929 - 35,316,773 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	35,254,281 - 35,262,751 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	35,108,844 - 35,117,307 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	35,264,308 - 35,272,778 (+)	NCBI		UU_Cfam_GSD_1.0

Lgi3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	12,596,621 - 12,603,899 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936555	5,966,577 - 5,973,954 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936555	5,966,617 - 5,973,898 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LGI3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	6,419,592 - 6,428,563 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	6,419,100 - 6,429,266 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	6,856,466 - 6,866,639 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LGI3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	20,216,373 - 20,226,744 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	20,216,372 - 20,225,599 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666052	22,009,472 - 22,019,709 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lgi3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	17,726,018 - 17,737,740 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624758	17,729,290 - 17,737,677 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Lgi3
13 total Variants

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
15	50933577	50933578	A	C	snv	ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), SS/JrHsdMcwi (MCW)	View more Information
15	50935832	50935833	T	G	snv	SR/JrHsd (MCW), FHH/EurMcwi (MCW)	View more Information

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
15	55945527	55945528	A	C	snv	SR/JrHsd (MCW), FHH/EurMcwi (MCW), ACI/EurMcwi (MCW)	View more Information
15	55947782	55947783	T	G	snv	FHL/EurMcwi (MCW), SR/JrHsd (MCW), FHH/EurMcwi (MCW)	View more Information

Predicted Target Of

	Summary Value
Count of predictions:	148
Count of miRNA genes:	117
Interacting mature miRNAs:	131
Transcripts:	ENSRNOT00000015104
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	17362897	73690657	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	28030665	82262678	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
2293686	Bmd36	Bone mineral density QTL 36	7.4	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	15	33611058	71477291	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	12496141	65205939	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	55302115	Rat
2293691	Bmd37	Bone mineral density QTL 37	6.6	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	15	33611058	71477291	Rat
2293688	Bss29	Bone structure and strength QTL 29	5.31	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	15	11111142	56111142	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	28030665	82262678	Rat
631273	Lecl2	Lens clarity QTL 2		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	15	10596089	55596089	Rat
1300144	Rf23	Renal function QTL 23	3.61		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	15	40631268	98288169	Rat
2300167	Bmd63	Bone mineral density QTL 63	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2266368	46921453	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	27885774	86257085	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	22117933	67117933	Rat
2300173	Bmd62	Bone mineral density QTL 62	12.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	19856566	46187442	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	16725528	80672115	Rat
1582251	Gluco24	Glucose level QTL 24	3.2	0.0008	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	5530756	50530756	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	34054139	79054139	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	28030665	82262678	Rat
2306968	Anxrr23	Anxiety related response QTL 23	4.83		reflex trait (VT:0001961)	amplitude of the acoustic startle response (CMO:0001520)	15	40631268	46187442	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	28030665	82262678	Rat
7411725	Strs7	Sensitivity to stroke QTL 7	3.8		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	15	40289901	49308583	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
8	11	45	113	63	62	31	25	31	6	170	93	93	30	60	31


RefSeq Transcripts	NM_001107277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC158671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015104 ⟹ ENSRNOP00000015104

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	45,605,611 - 45,612,739 (+)	Ensembl
Rnor_6.0 Ensembl	15	52,220,578 - 52,227,706 (+)	Ensembl

RefSeq Acc Id:

NM_001107277 ⟹ NP_001100747

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	52,015,317 - 52,022,445 (+)	NCBI
mRatBN7.2	15	45,605,611 - 45,612,739 (+)	NCBI
Rnor_6.0	15	52,220,578 - 52,227,706 (+)	NCBI
Rnor_5.0	15	55,944,095 - 55,951,223 (+)	NCBI
RGSC_v3.4	15	50,932,145 - 50,939,273 (+)	RGD
Celera	15	45,284,005 - 45,291,134 (+)	RGD

Sequence:

show sequence

TGGAGATCAGACACAGAGGCTGGTGGCCTGGTAGGGCACGCTGCGGACGGGTGCTACCACTCCATCCTTTGGCTGCTCTCCCGCCAGCTCCGAGCCTGGGCCTCCCCGCTCCGCCCCCGCGCGCGCCC
CCGCCGCCTGCGCCGCAGTCCGCGTCCACCAGCCCTGGCAGCCAGTAGTTGCGGTCCCAGTTCCGCGCAGCGCTCCGGAGCTGAAAGGACTGCAGCCAGCGCCCGAGGTCAGGAGGAATAGGTGGCGC
CTAGAAACCGGGTGGCACCAGAGCTGCGGCAGCCCGGAGGTGGACGCTCTCGAGGGGGCCAGAGCAGCTTGCAGCTGCAGCGGGGCGCCGGCAGGCTGGTGTTGGGGAGACCCTGCAGGAGGCATGGC
CCGGCTACGAGCCAGGCGGGGCCCTATGTGCCGGCTACTGGTGTTGTCCACGTTGGGTTTTTACCTAATGCTGCAAGCCAGTGCCAAGAGGCCTCCTAAGACGCCCCCCTGCCCACCCAGCTGCTCCT
GCACCAGGGATACAGCCTTCTGCGTGGACTCTAAGTCGGTGCCCAAGAACCTGCCTTCAGAGGTCATCTCCCTGACACTGGTGAATGCTGCCTTCTCAGAGATCCAGGACGGAGCCTTCTCCCACCTG
CCACTGTTGCAGTTCTTGTTACTCAACTCCAACAAGTTCACGCTGATTGGAGACAACGCCTTCACAGGACTGTCGCACCTGCAGTACCTCTTCATAGAAAACAATGATATCTGGGGTCTCTCCAAGTT
TACCTTCAGAGGATTGAAGTCCTTGACACACCTCTCTCTGGCCAACAATAACCTCCAGACACTGCCCAGAGACATCTTTCGTCCCCTGGACATCTTGAGTGACTTGGACCTCCGGGGCAACGCACTTA
ACTGTGACTGCAAGGTAAAGTGGCTGGTGGAGTGGCTGGCACACACCAACACCACAGTGGCCCCCATCTACTGTGCCAGCCCGCCCCGCTTCCAGGAGCACAAGGTGCAGGACTTGCCTCTTCGGGAA
TTCGACTGTATCACCACTGATTTTGTCCTCTACCAGACTCTGTCCTTCCCAGCAGTGTCTGCAGAACCCTTCCTTTACTCCAGTGACCTCTATTTGGCTCTGGCCCAGCCTGGTGCCAGCGCCTGCAC
CATCCTCAAGTGGGACTATGTGGAACGACAGCTTCGTGACTATGATAGAATTCCAGCCCCCTCAGCTGTGCACTGCAAGCCAATGGTGGTGGATGGCCAGCTCTATGTAGTCGTGGCCCAGCTGTTCG
GTGGCTCATATATTTACCACTGGGACCCGAACACCACCCGCTTCACCAAGCTGCAGGACATCGACCCACAGCGCGTGCGCAAACCCAATGACCTGGAAGCTTTCCGCATCGATGGTGATTGGTTCTTC
GCGGTGGCTGACAGTTCCAAAGCAGGTGCCACCAGCCTCTACCGTTGGCACCAGAATGGCTTCTATTCCCACCAGGCCCTGCACGCCTGGCACCGCGACACTGACCTGGAGTTTGTGGATGGTGAGGG
CAAGCCACGGTTGATTGTGTCTAGCAGTTCTCAGGCACCTGTCATCTATCAATGGAGTCGTACTCAGAAACAGTTTGTGGCTCAGGGAGAGGTGACTCAGGTGCCTGATGCCCAGGCTGTGAAACACT
TTCGTGCTGGCCGAGACAGCTACCTGTGCCTTAGCCGCTATATTGGTGACTCCAAGATCCTGCGCTGGGAGGGTACCCGTTTCTCAGAGGTGCAAGCCCTTCCCTCCCGAGGTTCACTGGCCCTACAG
CCCTTCCTGGTGGGCGGTCACCGCTACCTGGCACTGGGCAGTGACTTCTCCTTCACCCAGATCTACCAGTGGGATGAGGGGCGACAGAAATTTGTACGGTTCCAAGAACTGGCAGTACAGGCCCCTCG
GGCCTTCTGCTACATGCCTGCTGGAGATGCCCAGCTGCTCCTGGCCCCCAGTTTCAAGGGACAAACACTGGTTTACCGACATGTTGTGGTGGACCTTAGTGCCTAGAGGGAGGCTAAGTCCTTTGGGT
TCCTCAGGGTGGTACTGTATGATGGTGAAGACCTCTGTGAGCAACTTGTGGCCCCAAATGAGGTCACATGTGGCTAACCTGTCTATGTAAGACACACACACATGTACACAGAAGTGGGCCTGGGCACA
CTCCAGAGACTAGCCCAGGGGAGCCATTCCCATTACTGTAGTCAGCACCTACATATGCGCCAGGCACCCAACATCCAGGTCCTCCTCCATGTGTGCACCAATGGCTGCTCATCTCCAGTGCTCCCATA
CTCCGTCACTAGTGTGTCTGACTGATTCAGTGGGTACAGGAAGGGGTGAGCCACAGCCTTCTCTTCTCAGCTTAGCCTTCTGCTCTCTGGCCTTTCCCCTGGATGCTCAAGGTGTTTGTCTACCTGTT
TAGCATTCACAGTTGCAGCCTCCCTCCAGGTACGCCCACACTTCCAAGTGTGTCTGCCCATGCCATGCTCCTTCTGCATGTGGACACTGATGGATAAACTCGGCTATGTACTTGTGTATACCTGGCCA
CACTCCTACTTCCGTATATGCACATGTCTGGGAGTGTATACACGAGTATACGGGGTGCTGAACAAACCGGCTTCCTTGTAATCGCCTAGCTGCTCTTCTTGGAGGGTGCCTACAGCACCCACACTTTC
TCTGCTCTCCCCATTGTGCCCCCTATGTGGCTAATAAGGATAATAACAGGAAGCATGGCTGTGGCCTTCCAGGGACAAAGCCATTTCATCCCGAAGCACTAATAACAAGAGGCAACAGCAACTGGGTT
CTTGGCAGTACAGTATAGCTTTCTTCTCATTAGAATTTCCTTCTGTGACTCAATCCCAGCCCAACTGGACACGGGTGGAAAAGGGAGGCTTTCTCTGGAATAGCTATTGCTTTTTCAAGCTCGGGCCA
TCTCCTTTCTCATCCCATCTTTGGGATGTGGACCCTGAACTGTGATTGCTCCTTGGGTGGATATAAAAACTAGACAAGGCAAGAATCCTGGGAGAGCCTGTATGGGTGCCAGGAACGTGTTGGTAGCC
CTGGCACCCATCCACTCCATGGAGATGCCCCCCACCCCACCCCAGGCACAGCTCAGTGGAGGCTGGATGAGGGTGGCAGGAGGGACACCTGGAAACCAGGCTTCTGCTGCCCTCTGCTGTCCACTGGG
AGCAGCAGCCCAGAAGCAGGAAATGGCCAGGCTGAGAGAAATTCTTGTGGCCTGATGCCTGGAGCATCTGGGGATAATGTTGATTCCTTTGCTTCAAATAAAGTTCCACCCCACTGCTA

hide sequence

RefSeq Acc Id:

XM_039093351 ⟹ XP_038949279

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	52,015,824 - 52,022,445 (+)	NCBI
mRatBN7.2	15	45,606,118 - 45,612,739 (+)	NCBI


Protein RefSeqs	NP_001100747	(Get FASTA)	NCBI Sequence Viewer
	XP_038949279	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58672	(Get FASTA)	NCBI Sequence Viewer
	EDM02223	(Get FASTA)	NCBI Sequence Viewer
	EDM02224	(Get FASTA)	NCBI Sequence Viewer
	EDM02225	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015104
	ENSRNOP00000015104.4

RefSeq Acc Id:	NP_001100747 ⟸ NM_001107277
- Peptide Label:	precursor
- UniProtKB:	D3ZN61 (UniProtKB/TrEMBL), A6HTL0 (UniProtKB/TrEMBL), A6HTL1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARLRARRGPMCRLLVLSTLGFYLMLQASAKRPPKTPPCPPSCSCTRDTAFCVDSKSVPKNLPSEVISLTLVNAAFSEIQDGAFSHLPLLQFLLLNSNKFTLIGDNAFTGLSHLQYLFIENNDIWGLS KFTFRGLKSLTHLSLANNNLQTLPRDIFRPLDILSDLDLRGNALNCDCKVKWLVEWLAHTNTTVAPIYCASPPRFQEHKVQDLPLREFDCITTDFVLYQTLSFPAVSAEPFLYSSDLYLALAQPGASA CTILKWDYVERQLRDYDRIPAPSAVHCKPMVVDGQLYVVVAQLFGGSYIYHWDPNTTRFTKLQDIDPQRVRKPNDLEAFRIDGDWFFAVADSSKAGATSLYRWHQNGFYSHQALHAWHRDTDLEFVDG EGKPRLIVSSSSQAPVIYQWSRTQKQFVAQGEVTQVPDAQAVKHFRAGRDSYLCLSRYIGDSKILRWEGTRFSEVQALPSRGSLALQPFLVGGHRYLALGSDFSFTQIYQWDEGRQKFVRFQELAVQA PRAFCYMPAGDAQLLLAPSFKGQTLVYRHVVVDLSA hide sequence

Ensembl Acc Id:

ENSRNOP00000015104 ⟸ ENSRNOT00000015104

RefSeq Acc Id:	XP_038949279 ⟸ XM_039093351
- Peptide Label:	isoform X1
- UniProtKB:	A6HTL1 (UniProtKB/TrEMBL)

Protein Domains

LRRCT

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZN61-F1-model_v2	AlphaFold	D3ZN61	1-548	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13699811

Promoter ID:

EPDNEW_R10334

Type:

initiation region

Name:

Lgi3_2

Description:

leucine-rich repeat LGI family, member 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R10335

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	52,220,515 - 52,220,575	EPDNEW

RGD ID:

13699812

Promoter ID:

EPDNEW_R10335

Type:

multiple initiation site

Name:

Lgi3_1

Description:

leucine-rich repeat LGI family, member 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R10334

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	52,220,712 - 52,220,772	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-13212	BioCyc
Ensembl Genes	ENSRNOG00000011323	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015104	ENTREZGENE
	ENSRNOT00000015104.6	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Cys-rich_flank_reg_C	UniProtKB/TrEMBL
	EAR	UniProtKB/TrEMBL
	EPTP	UniProtKB/TrEMBL
	L_dom-like	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LGI_related	UniProtKB/TrEMBL
	Quinoprot_gluc/sorb_DH	UniProtKB/TrEMBL
KEGG Report	rno:306013	UniProtKB/TrEMBL
NCBI Gene	306013	ENTREZGENE
PANTHER	LEUCINE-RICH REPEAT LGI FAMILY MEMBER 3	UniProtKB/TrEMBL
	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	EPTP	UniProtKB/TrEMBL
	LRR_8	UniProtKB/TrEMBL
PhenoGen	Lgi3	PhenoGen
PROSITE	EAR	UniProtKB/TrEMBL
	LRR	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011323	RatGTEx
SMART	LRR_TYP	UniProtKB/TrEMBL
	LRRCT	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
	SSF50952	UniProtKB/TrEMBL
UniProt	A6HTL0	ENTREZGENE, UniProtKB/TrEMBL
	A6HTL1	ENTREZGENE, UniProtKB/TrEMBL
	B0BN38_RAT	UniProtKB/TrEMBL
	D3ZN61	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Lgi3	leucine-rich repeat LGI family, member 3	Lgi3_predicted	leucine-rich repeat LGI family, member 3 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Lgi3_predicted	leucine-rich repeat LGI family, member 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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