Hscb (HscB mitochondrial iron-sulfur cluster co-chaperone) - Rat Genome Database

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Gene: Hscb (HscB mitochondrial iron-sulfur cluster co-chaperone) Rattus norvegicus
Analyze
Symbol: Hscb
Name: HscB mitochondrial iron-sulfur cluster co-chaperone
RGD ID: 1311005
Description: Predicted to enable identical protein binding activity. Predicted to be involved in [2Fe-2S] cluster assembly and primitive erythrocyte differentiation. Predicted to act upstream of or within erythrocyte differentiation. Predicted to be located in cytoplasm. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in sideroblastic anemia 5. Orthologous to human HSCB (HscB mitochondrial iron-sulfur cluster cochaperone); PARTICIPATES IN mitochondrial iron-sulfur cluster protein biogenesis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; diuron.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: HscB iron-sulfur cluster co-chaperone homolog; HscB iron-sulfur cluster co-chaperone homolog (E. coli); iron-sulfur cluster co-chaperone protein HscB; iron-sulfur cluster co-chaperone protein HscB, mitochondrial; LOC360826; RGD1311005; similar to J-type co-chaperone HSC20
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81251,481,318 - 51,491,689 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1251,481,326 - 51,501,507 (+)EnsemblGRCr8
mRatBN7.21245,821,527 - 45,831,902 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,821,555 - 45,831,909 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1246,997,274 - 47,007,298 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01247,603,008 - 47,613,025 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01246,663,530 - 46,673,548 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01251,878,267 - 51,888,645 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1251,878,153 - 51,888,669 (+)Ensemblrn6Rnor6.0
Rnor_5.01253,616,638 - 53,626,996 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41245,966,103 - 45,976,448 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1247,381,162 - 47,391,328 (+)NCBICelera
RGSC_v3.11245,829,995 - 45,840,566 (+)NCBI
Cytogenetic Map12q16NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (ISO)
mitochondrion  (IBA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Iron-sulfur cluster biogenesis in mammalian cells: New insights into the molecular mechanisms of cluster delivery. Maio N and Rouault TA, Biochim Biophys Acta. 2015 Jun;1853(6):1493-512. doi: 10.1016/j.bbamcr.2014.09.009. Epub 2014 Sep 19.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:18614015   PMID:20668094   PMID:24606901  


Genomics

Comparative Map Data
Hscb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81251,481,318 - 51,491,689 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1251,481,326 - 51,501,507 (+)EnsemblGRCr8
mRatBN7.21245,821,527 - 45,831,902 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,821,555 - 45,831,909 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1246,997,274 - 47,007,298 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01247,603,008 - 47,613,025 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01246,663,530 - 46,673,548 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01251,878,267 - 51,888,645 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1251,878,153 - 51,888,669 (+)Ensemblrn6Rnor6.0
Rnor_5.01253,616,638 - 53,626,996 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41245,966,103 - 45,976,448 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1247,381,162 - 47,391,328 (+)NCBICelera
RGSC_v3.11245,829,995 - 45,840,566 (+)NCBI
Cytogenetic Map12q16NCBI
HSCB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382228,742,032 - 28,757,510 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2228,742,039 - 28,757,522 (+)Ensemblhg38GRCh38
GRCh372229,138,020 - 29,153,498 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362227,468,043 - 27,483,498 (+)NCBIBuild 36Build 36hg18NCBI36
Celera2212,938,022 - 12,953,467 (+)NCBICelera
Cytogenetic Map22q12.1NCBI
HuRef2212,103,229 - 12,118,689 (+)NCBIHuRef
CHM1_12229,097,104 - 29,112,531 (+)NCBICHM1_1
T2T-CHM13v2.02229,203,667 - 29,219,144 (+)NCBIT2T-CHM13v2.0
Hscb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395110,976,945 - 110,987,647 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5110,976,936 - 110,987,643 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385110,829,070 - 110,839,793 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5110,829,070 - 110,839,777 (-)Ensemblmm10GRCm38
MGSCv375111,258,089 - 111,268,796 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365111,069,372 - 111,080,043 (-)NCBIMGSCv36mm8
Celera5107,960,954 - 107,971,868 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.72NCBI
Hscb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554553,005,617 - 3,013,393 (+)NCBIChiLan1.0ChiLan1.0
HSCB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22338,740,457 - 38,755,995 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12241,439,553 - 41,454,803 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0229,811,294 - 9,826,245 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12227,512,557 - 27,528,198 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2227,512,564 - 27,527,914 (+)EnsemblpanPan2panpan1.1
HSCB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12622,103,803 - 22,120,200 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2622,103,845 - 22,120,198 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2621,975,398 - 21,991,803 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02622,476,999 - 22,493,407 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2622,477,046 - 22,493,422 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12622,187,261 - 22,203,642 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02622,450,893 - 22,467,277 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02622,513,309 - 22,529,793 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hscb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118113,010,592 - 113,022,431 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366572,848,282 - 2,860,115 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSCB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1445,967,502 - 45,980,622 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11445,967,460 - 45,980,632 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HSCB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11911,621,205 - 11,639,750 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1911,621,420 - 11,636,396 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045114,517,448 - 114,532,613 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hscb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247475,072,708 - 5,094,404 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Hscb
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11643,504,811 - 43,514,587 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:8
Count of miRNA genes:8
Interacting mature miRNAs:8
Transcripts:ENSRNOT00000056798
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123776414551558799Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)123370043251558799Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)124413955852308831Rat

Markers in Region
RH134477  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,831,458 - 45,831,676 (+)MAPPERmRatBN7.2
Rnor_6.01251,888,202 - 51,888,419NCBIRnor6.0
Rnor_5.01253,626,553 - 53,626,770UniSTSRnor5.0
RGSC_v3.41245,976,005 - 45,976,222UniSTSRGSC3.4
Celera1247,390,885 - 47,391,102UniSTS
RH 3.4 Map12812.51UniSTS
Cytogenetic Map12q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000056798   ⟹   ENSRNOP00000053641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,481,326 - 51,491,684 (+)Ensembl
mRatBN7.2 Ensembl1245,821,555 - 45,831,902 (+)Ensembl
Rnor_6.0 Ensembl1251,878,153 - 51,888,669 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096303   ⟹   ENSRNOP00000083969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,481,326 - 51,501,507 (+)Ensembl
mRatBN7.2 Ensembl1245,821,555 - 45,831,909 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102335   ⟹   ENSRNOP00000085570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,481,326 - 51,489,790 (+)Ensembl
mRatBN7.2 Ensembl1245,821,555 - 45,831,909 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000130489   ⟹   ENSRNOP00000112240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,481,326 - 51,490,777 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000149355   ⟹   ENSRNOP00000098653
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,481,326 - 51,496,110 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000162294   ⟹   ENSRNOP00000101643
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,481,326 - 51,492,640 (+)Ensembl
RefSeq Acc Id: NM_001108340   ⟹   NP_001101810
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,481,343 - 51,491,689 (+)NCBI
mRatBN7.21245,821,555 - 45,831,902 (+)NCBI
Rnor_6.01251,878,300 - 51,888,645 (+)NCBI
Rnor_5.01253,616,638 - 53,626,996 (+)NCBI
RGSC_v3.41245,966,103 - 45,976,448 (+)RGD
Celera1247,381,162 - 47,391,328 (+)RGD
Sequence:
RefSeq Acc Id: XM_006249564   ⟹   XP_006249626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,481,318 - 51,491,680 (+)NCBI
mRatBN7.21245,821,527 - 45,831,898 (+)NCBI
Rnor_6.01251,878,268 - 51,888,642 (+)NCBI
Rnor_5.01253,616,638 - 53,626,996 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769340   ⟹   XP_008767562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,481,318 - 51,491,680 (+)NCBI
mRatBN7.21245,821,527 - 45,831,892 (+)NCBI
Rnor_6.01251,878,267 - 51,888,591 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039089616   ⟹   XP_038945544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,481,318 - 51,487,883 (+)NCBI
mRatBN7.21245,821,527 - 45,826,709 (+)NCBI
RefSeq Acc Id: XM_039089617   ⟹   XP_038945545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,481,318 - 51,491,680 (+)NCBI
mRatBN7.21245,821,528 - 45,831,892 (+)NCBI
RefSeq Acc Id: XM_039089618   ⟹   XP_038945546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,481,318 - 51,489,794 (+)NCBI
mRatBN7.21245,821,528 - 45,831,893 (+)NCBI
RefSeq Acc Id: XM_063271547   ⟹   XP_063127617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,481,319 - 51,485,951 (+)NCBI
RefSeq Acc Id: NP_001101810   ⟸   NM_001108340
- Peptide Label: precursor
- UniProtKB: D3ZME7 (UniProtKB/TrEMBL),   A6J288 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249626   ⟸   XM_006249564
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZYF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008767562   ⟸   XM_008769340
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A2K9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000053641   ⟸   ENSRNOT00000056798
RefSeq Acc Id: XP_038945544   ⟸   XM_039089616
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038945546   ⟸   XM_039089618
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038945545   ⟸   XM_039089617
- Peptide Label: isoform X4
- UniProtKB: A6J289 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085570   ⟸   ENSRNOT00000102335
Ensembl Acc Id: ENSRNOP00000083969   ⟸   ENSRNOT00000096303
RefSeq Acc Id: XP_063127617   ⟸   XM_063271547
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000101643   ⟸   ENSRNOT00000162294
Ensembl Acc Id: ENSRNOP00000112240   ⟸   ENSRNOT00000130489
Ensembl Acc Id: ENSRNOP00000098653   ⟸   ENSRNOT00000149355
Protein Domains
J

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZME7-F1-model_v2 AlphaFold D3ZME7 1-234 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698733
Promoter ID:EPDNEW_R9257
Type:initiation region
Name:Hscb_1
Description:HscB mitochondrial iron-sulfur cluster co-chaperone
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01251,878,321 - 51,878,381EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311005 AgrOrtholog
BioCyc Gene G2FUF-18827 BioCyc
Ensembl Genes ENSRNOG00000037508 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000056798 ENTREZGENE
  ENSRNOT00000056798.5 UniProtKB/TrEMBL
  ENSRNOT00000096303.2 UniProtKB/TrEMBL
  ENSRNOT00000102335 ENTREZGENE
  ENSRNOT00000102335.2 UniProtKB/TrEMBL
  ENSRNOT00000130489.1 UniProtKB/TrEMBL
  ENSRNOT00000149355.1 UniProtKB/TrEMBL
  ENSRNOT00000162294 ENTREZGENE
  ENSRNOT00000162294.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
  1.20.1280.20 UniProtKB/TrEMBL
InterPro DnaJ_dom_sf UniProtKB/TrEMBL
  DnaJ_N UniProtKB/TrEMBL
  Heat_shock_cognate_B_oligo_C UniProtKB/TrEMBL
  HscB UniProtKB/TrEMBL
  HscB_4_cys UniProtKB/TrEMBL
  HscB_C_sf UniProtKB/TrEMBL
KEGG Report rno:360826 UniProtKB/TrEMBL
NCBI Gene 360826 ENTREZGENE
PANTHER IRON-SULFUR CLUSTER CO-CHAPERONE PROTEIN HSCB UniProtKB/TrEMBL
  PTHR14021 UniProtKB/TrEMBL
Pfam HscB_4_cys UniProtKB/TrEMBL
  HSCB_C UniProtKB/TrEMBL
PhenoGen Hscb PhenoGen
PROSITE DNAJ_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000037508 RatGTEx
SMART DnaJ UniProtKB/TrEMBL
Superfamily-SCOP DnaJ_N UniProtKB/TrEMBL
  HSC20_C UniProtKB/TrEMBL
UniProt A0A8I5ZYF5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A2K9 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0KWB7_RAT UniProtKB/TrEMBL
  A0ABK0LAZ4_RAT UniProtKB/TrEMBL
  A0ABK0M4E4_RAT UniProtKB/TrEMBL
  A6J288 ENTREZGENE, UniProtKB/TrEMBL
  A6J289 ENTREZGENE, UniProtKB/TrEMBL
  D3ZME7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-09-18 Hscb  HscB mitochondrial iron-sulfur cluster co-chaperone  Hscb  HscB iron-sulfur cluster co-chaperone homolog (E. coli)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-27 Hscb  HscB iron-sulfur cluster co-chaperone homolog (E. coli)  RGD1311005_predicted  similar to J-type co-chaperone HSC20 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1311005_predicted  similar to J-type co-chaperone HSC20 (predicted)  LOC360826_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC360826_predicted  similar to J-type co-chaperone HSC20 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL