Utp15 (UTP15, small subunit processome component) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Utp15 (UTP15, small subunit processome component) Rattus norvegicus
Analyze
Symbol: Utp15
Name: UTP15, small subunit processome component
RGD ID: 1310992
Description: Predicted to be involved in positive regulation of RNA metabolic process and ribosome biogenesis. Predicted to be located in fibrillar center. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human UTP15 (UTP15 small subunit processome component); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC310019; RGD1310992; similar to hypothetical protein FLJ12787; U3 small nucleolar RNA-associated protein 15 homolog; UTP15 SSU processome component; UTP15, U3 small nucleolar ribonucleoprotein, homolog; UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae); UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8231,329,222 - 31,347,022 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl231,329,223 - 31,347,046 (-)EnsemblGRCr8
mRatBN7.2229,594,405 - 29,612,819 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl229,594,941 - 29,612,773 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx236,653,455 - 36,669,889 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0234,747,808 - 34,764,242 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0229,565,685 - 29,582,127 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0228,351,925 - 28,370,315 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl228,353,854 - 28,370,261 (-)Ensemblrn6Rnor6.0
Rnor_5.0247,453,635 - 47,472,141 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4228,837,115 - 28,853,532 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera225,634,575 - 25,651,001 (-)NCBICelera
RGSC_v3.1228,758,349 - 28,771,165 (-)NCBI
Cytogenetic Map2q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO)
fibrillar center  (IEA,ISO,ISS)
nucleolus  (IBA,IEA,ISO,ISS)
small-subunit processome  (IEA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17699751   PMID:22658674   PMID:22681889   PMID:24219289  


Genomics

Comparative Map Data
Utp15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8231,329,222 - 31,347,022 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl231,329,223 - 31,347,046 (-)EnsemblGRCr8
mRatBN7.2229,594,405 - 29,612,819 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl229,594,941 - 29,612,773 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx236,653,455 - 36,669,889 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0234,747,808 - 34,764,242 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0229,565,685 - 29,582,127 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0228,351,925 - 28,370,315 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl228,353,854 - 28,370,261 (-)Ensemblrn6Rnor6.0
Rnor_5.0247,453,635 - 47,472,141 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4228,837,115 - 28,853,532 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera225,634,575 - 25,651,001 (-)NCBICelera
RGSC_v3.1228,758,349 - 28,771,165 (-)NCBI
Cytogenetic Map2q12NCBI
UTP15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38573,565,741 - 73,583,380 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl573,565,443 - 73,583,380 (+)Ensemblhg38GRCh38
GRCh37572,861,566 - 72,879,205 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36572,897,354 - 72,913,550 (+)NCBIBuild 36Build 36hg18NCBI36
Celera568,756,885 - 68,773,081 (+)NCBICelera
Cytogenetic Map5q13.2NCBI
HuRef568,067,100 - 68,083,293 (+)NCBIHuRef
CHM1_1572,294,331 - 72,310,527 (+)NCBICHM1_1
T2T-CHM13v2.0574,047,053 - 74,064,689 (+)NCBIT2T-CHM13v2.0
Utp15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391398,383,353 - 98,399,500 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1398,383,353 - 98,399,549 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381398,246,845 - 98,262,992 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1398,246,845 - 98,263,041 (-)Ensemblmm10GRCm38
MGSCv371399,016,800 - 99,032,947 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361399,347,002 - 99,363,149 (-)NCBIMGSCv36mm8
Celera13101,897,013 - 101,913,154 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1351.87NCBI
Utp15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542527,017,817 - 27,035,431 (-)Ensembl
ChiLan1.0NW_00495542527,018,938 - 27,035,715 (-)NCBIChiLan1.0ChiLan1.0
UTP15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2441,738,496 - 41,754,457 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1539,892,130 - 39,908,057 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0541,735,713 - 41,753,026 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1542,336,817 - 42,351,574 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl542,337,245 - 42,349,974 (-)EnsemblpanPan2panpan1.1
UTP15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1256,378,116 - 56,395,009 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl256,381,734 - 56,393,813 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha253,354,396 - 53,372,975 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0256,900,377 - 56,918,895 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl256,900,404 - 56,918,891 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1253,960,779 - 53,979,333 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0254,728,707 - 54,747,412 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0255,620,047 - 55,638,574 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Utp15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213187,835,539 - 187,848,932 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365493,011,513 - 3,020,266 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365493,010,676 - 3,023,362 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UTP15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl282,715,416 - 82,734,113 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1282,715,411 - 82,733,042 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2284,210,698 - 84,227,058 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UTP15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1467,928,440 - 67,942,820 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl467,929,900 - 67,943,970 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604916,698,570 - 16,713,041 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Utp15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249241,435,938 - 1,453,704 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249241,435,240 - 1,456,193 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Utp15
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13198,334,517 - 198,352,866 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Utp15
171 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:587
Count of miRNA genes:279
Interacting mature miRNAs:357
Transcripts:ENSRNOT00000022259
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21332504158325041Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2142977529Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
9590080Insglur4Insulin/glucose ratio QTL 428.70.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)2615276751152767Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21605188361051883Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
731166Mamtr2Mammary tumor resistance QTL 20.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358154623581Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)21436870759368707Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2962358144538110Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)2573632550736325Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat

Markers in Region
BF396985  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2229,595,000 - 29,595,129 (+)MAPPERmRatBN7.2
Rnor_6.0228,352,521 - 28,352,649NCBIRnor6.0
Rnor_5.0247,453,692 - 47,453,820UniSTSRnor5.0
RGSC_v3.4228,835,791 - 28,835,919UniSTSRGSC3.4
Celera225,633,251 - 25,633,379UniSTS
RH 3.4 Map234.5UniSTS
Cytogenetic Map2q12UniSTS
RH140112  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2229,596,385 - 29,596,603 (+)MAPPERmRatBN7.2
Rnor_6.0228,353,906 - 28,354,123NCBIRnor6.0
Rnor_5.0247,455,077 - 47,455,294UniSTSRnor5.0
RGSC_v3.4228,837,176 - 28,837,393UniSTSRGSC3.4
Celera225,634,636 - 25,634,853UniSTS
Cytogenetic Map2q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000022259   ⟹   ENSRNOP00000022259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl229,596,569 - 29,612,773 (-)Ensembl
Rnor_6.0 Ensembl228,353,854 - 28,370,261 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097680   ⟹   ENSRNOP00000095293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl231,329,223 - 31,347,046 (-)Ensembl
mRatBN7.2 Ensembl229,594,941 - 29,609,858 (-)Ensembl
RefSeq Acc Id: NM_001107647   ⟹   NP_001101117
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8231,330,579 - 31,346,995 (-)NCBI
mRatBN7.2229,596,325 - 29,612,741 (-)NCBI
Rnor_6.0228,353,845 - 28,370,261 (-)NCBI
Rnor_5.0247,453,635 - 47,472,141 (-)NCBI
RGSC_v3.4228,837,115 - 28,853,532 (-)RGD
Celera225,634,575 - 25,651,001 (-)RGD
Sequence:
RefSeq Acc Id: XM_039102170   ⟹   XP_038958098
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8231,329,222 - 31,347,022 (-)NCBI
mRatBN7.2229,594,405 - 29,612,819 (-)NCBI
RefSeq Acc Id: XM_063281718   ⟹   XP_063137788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8231,329,222 - 31,347,022 (-)NCBI
RefSeq Acc Id: NP_001101117   ⟸   NM_001107647
- UniProtKB: A2RRU3 (UniProtKB/Swiss-Prot),   A6I536 (UniProtKB/TrEMBL),   A0A8I6B2C6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022259   ⟸   ENSRNOT00000022259
RefSeq Acc Id: XP_038958098   ⟸   XM_039102170
- Peptide Label: isoform X1
- UniProtKB: A2RRU3 (UniProtKB/Swiss-Prot),   A6I536 (UniProtKB/TrEMBL),   A0A8I6B2C6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000095293   ⟸   ENSRNOT00000097680
RefSeq Acc Id: XP_063137788   ⟸   XM_063281718
- Peptide Label: isoform X1
- UniProtKB: A2RRU3 (UniProtKB/Swiss-Prot),   A6I536 (UniProtKB/TrEMBL),   A0A8I6B2C6 (UniProtKB/TrEMBL)
Protein Domains
U3 small nucleolar RNA-associated protein 15 C-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A2RRU3-F1-model_v2 AlphaFold A2RRU3 1-528 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691089
Promoter ID:EPDNEW_R1614
Type:initiation region
Name:Utp15_1
Description:UTP15, small subunit processome component
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0228,370,287 - 28,370,347EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310992 AgrOrtholog
BioCyc Gene G2FUF-54732 BioCyc
Ensembl Genes ENSRNOG00000016591 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000022259.8 UniProtKB/Swiss-Prot
  ENSRNOT00000097680 ENTREZGENE
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7189311 IMAGE-MGC_LOAD
  IMAGE:7454138 IMAGE-MGC_LOAD
InterPro U3_snoRNA-assocProt_15_C UniProtKB/Swiss-Prot
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot
  WD40_repeat UniProtKB/Swiss-Prot
  WD40_repeat_CS UniProtKB/Swiss-Prot
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:310019 UniProtKB/Swiss-Prot
MGC_CLONE MGC:125224 IMAGE-MGC_LOAD
  MGC:156811 IMAGE-MGC_LOAD
NCBI Gene 310019 ENTREZGENE
PANTHER U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 HOMOLOG UniProtKB/Swiss-Prot
  UTP15 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 FAMILY MEMBER UniProtKB/Swiss-Prot
Pfam UTP15_C UniProtKB/Swiss-Prot
  WD40 UniProtKB/Swiss-Prot
PhenoGen Utp15 PhenoGen
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot
  WD_REPEATS_2 UniProtKB/Swiss-Prot
  WD_REPEATS_REGION UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016591 RatGTEx
SMART WD40 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot
UniProt A0A8I6B2C6 ENTREZGENE, UniProtKB/TrEMBL
  A2RRU3 ENTREZGENE
  A6I536 ENTREZGENE, UniProtKB/TrEMBL
  Q32Q03_RAT UniProtKB/TrEMBL
  UTP15_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-01 Utp15  UTP15, small subunit processome component  Utp15  UTP15 SSU processome component  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-03 Utp15  UTP15 SSU processome component  Utp15  UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Utp15  UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)  Utp15  UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-27 Utp15  UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)  RGD1310992  similar to hypothetical protein FLJ12787  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1310992  similar to hypothetical protein FLJ12787  RGD1310992_predicted  similar to hypothetical protein FLJ12787 (predicted)  Symbol and Name status set to approved 1299863 APPROVED
2005-01-20 RGD1310992_predicted  similar to hypothetical protein FLJ12787 (predicted)  LOC310019_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC310019_predicted  similar to hypothetical protein FLJ12787 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL