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Gene: Herc4 (HECT and RLD domain containing E3 ubiquitin protein ligase 4) Rattus norvegicus

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Symbol:

Herc4

Name:

HECT and RLD domain containing E3 ubiquitin protein ligase 4

RGD ID:

1310971

Description:

Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including negative regulation of smoothened signaling pathway; protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and fibrillar center. Predicted to be active in cytoplasm. Orthologous to human HERC4 (HECT and RLD domain containing E3 ubiquitin protein ligase 4); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

HECT domain and RCC1-like domain-containing protein 4; hect domain and RLD 4; HECT-type E3 ubiquitin transferase HERC4; LOC309758; probable E3 ubiquitin-protein ligase HERC4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	25,329,005 - 25,403,443 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	25,328,822 - 25,403,372 (-)	Ensembl				GRCr8
mRatBN7.2	20	25,329,972 - 25,404,657 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	25,330,280 - 25,404,657 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	26,023,208 - 26,097,568 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	25,376,231 - 25,450,593 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	25,962,772 - 26,037,143 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	26,755,948 - 26,831,267 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	26,755,911 - 26,830,931 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	8,063,820 - 8,139,150 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	25,591,774 - 25,665,597 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	26,628,361 - 26,702,717 (-)	NCBI		Celera
RGSC_v3.1	20	25,605,573 - 25,679,395 (+)	NCBI
Cytogenetic Map	20	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2-methylcholine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

biotin (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

chrysene (ISO)

crocidolite asbestos (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

indometacin (ISO)

ivermectin (ISO)

methimazole (EXP)

nickel atom (ISO)

nickel sulfate (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

phenobarbital (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

temozolomide (ISO)

testosterone (EXP)

testosterone undecanoate (ISO)

topotecan (EXP)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

negative regulation of smoothened signaling pathway (IEA,ISO)

protein ubiquitination (IBA,IEA)

spermatogenesis (IEA,ISO,ISS)

ubiquitin-dependent protein catabolic process (IBA)

Cellular Component

cytoplasm (IBA)

cytosol (IEA,ISO)

Molecular Function

transferase activity (IEA)

ubiquitin protein ligase activity (IBA,IEA)

ubiquitin-protein transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

ubiquitin/proteasome degradation pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Disruption of the ubiquitin ligase HERC4 causes defects in spermatozoon maturation and impaired fertility.	Rodriguez CI and Stewart CL, Dev Biol. 2007 Dec 15;312(2):501-8. Epub 2007 Oct 4.

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:31010679

Genomics

Comparative Map Data

Herc4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	25,329,005 - 25,403,443 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	25,328,822 - 25,403,372 (-)	Ensembl				GRCr8
mRatBN7.2	20	25,329,972 - 25,404,657 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	25,330,280 - 25,404,657 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	26,023,208 - 26,097,568 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	25,376,231 - 25,450,593 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	25,962,772 - 26,037,143 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	26,755,948 - 26,831,267 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	26,755,911 - 26,830,931 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	8,063,820 - 8,139,150 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	25,591,774 - 25,665,597 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	26,628,361 - 26,702,717 (-)	NCBI		Celera
RGSC_v3.1	20	25,605,573 - 25,679,395 (+)	NCBI
Cytogenetic Map	20	p11	NCBI

HERC4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	67,921,905 - 68,075,283 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	67,921,899 - 68,075,342 (-)	Ensembl			hg38	GRCh38
GRCh37	10	69,681,662 - 69,835,040 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	69,351,662 - 69,505,109 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	69,352,252 - 69,505,019	NCBI
Celera	10	62,956,525 - 63,109,715 (-)	NCBI		Celera
Cytogenetic Map	10	q21.3	NCBI
HuRef	10	63,681,241 - 63,834,644 (-)	NCBI		HuRef
CHM1_1	10	69,963,663 - 70,116,856 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	68,790,646 - 68,944,156 (-)	NCBI		T2T-CHM13v2.0

Herc4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	63,079,122 - 63,153,660 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	63,079,589 - 63,153,657 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	63,243,751 - 63,317,881 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	63,243,810 - 63,317,878 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	62,706,733 - 62,780,625 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	62,639,342 - 62,713,234 (+)	NCBI		MGSCv36	mm8
Celera	10	64,344,505 - 64,417,884 (+)	NCBI		Celera
Cytogenetic Map	10	B4	NCBI
cM Map	10	32.56	NCBI

Herc4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955425	20,309,449 - 20,418,338 (-)	Ensembl
ChiLan1.0	NW_004955425	20,310,264 - 20,418,154 (-)	NCBI	ChiLan1.0	ChiLan1.0

HERC4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	80,084,224 - 80,238,793 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	80,090,126 - 80,244,093 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	64,405,164 - 64,559,651 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	66,717,537 - 66,870,774 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	66,716,761 - 66,870,774 (-)	Ensembl			panPan2	panpan1.1

HERC4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	19,223,525 - 19,352,490 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	19,210,166 - 19,351,709 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	19,352,188 - 19,484,809 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	19,489,565 - 19,622,141 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	19,489,565 - 19,622,026 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	19,372,156 - 19,504,936 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	19,594,124 - 19,726,917 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	19,937,349 - 20,070,205 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Herc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	61,683,669 - 61,800,939 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936521	10,176,132 - 10,292,845 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936521	10,176,191 - 10,294,761 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HERC4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	71,122,792 - 71,269,424 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	71,126,100 - 71,269,517 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	77,237,996 - 77,279,396 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HERC4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	63,311,619 - 63,460,621 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	63,311,651 - 63,461,536 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	24,079,840 - 24,229,746 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Herc4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	2,336,163 - 2,466,862 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624754	2,335,585 - 2,466,955 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Herc4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	23,391,050 - 23,463,174 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Herc4
237 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	30
Count of miRNA genes:	25
Interacting mature miRNAs:	28
Transcripts:	ENSRNOT00000051367
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	1	26925056	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26128279	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8043920	29865039	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	20745585	56021148	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	1	27341128	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	12243242	49189476	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27341128	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat

Markers in Region

AW553563

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	20	25,329,274 - 25,329,375 (+)	Marker Load Pipeline
mRatBN7.2	20	25,330,546 - 25,330,648 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	26,830,584 - 26,830,685	NCBI	Rnor6.0
Rnor_5.0	20	8,138,467 - 8,138,568	UniSTS	Rnor5.0
RGSC_v3.4	20	25,665,227 - 25,665,328	UniSTS	RGSC3.4
Celera	20	26,628,630 - 26,628,731	UniSTS
Cytogenetic Map	20	p11	UniSTS

RH130359

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	25,330,161 - 25,330,347 (-)	MAPPER	mRatBN7.2
Rnor_6.0	20	26,830,885 - 26,831,070	NCBI	Rnor6.0
Rnor_5.0	20	8,138,768 - 8,138,953	UniSTS	Rnor5.0
RGSC_v3.4	20	25,665,528 - 25,665,713	UniSTS	RGSC3.4
Celera	20	26,628,245 - 26,628,430	UniSTS
Cytogenetic Map	20	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005497262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC087104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000083017 ⟹ ENSRNOP00000072219

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	25,328,822 - 25,403,372 (-)	Ensembl
mRatBN7.2 Ensembl	20	25,330,280 - 25,404,657 (-)	Ensembl
Rnor_6.0 Ensembl	20	26,755,911 - 26,830,931 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107240 ⟹ ENSRNOP00000082108

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	25,329,007 - 25,396,592 (-)	Ensembl
mRatBN7.2 Ensembl	20	25,330,287 - 25,404,566 (-)	Ensembl

RefSeq Acc Id:

NM_001012074 ⟹ NP_001012074

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	25,329,005 - 25,403,372 (-)	NCBI
mRatBN7.2	20	25,330,278 - 25,404,657 (-)	NCBI
Rnor_6.0	20	26,755,948 - 26,830,954 (+)	NCBI
Rnor_5.0	20	8,063,820 - 8,139,150 (+)	NCBI
RGSC_v3.4	20	25,591,774 - 25,665,597 (+)	RGD
Celera	20	26,628,361 - 26,702,717 (-)	RGD

Sequence:

show sequence

CCCTCGGCTCTCTCCACCCCTCGTGTTCTCCGCCCTGCTCGCCACCAGCCCTTCCCCTCCCGCT
CCATCCGGGTCGCTGACGGCTGTCTCTCGGTCGGGAGAGTGCAGGCGGCAGCTTCTCTCTGAGG
AACCTGGGAAAGTTTCACCGGAGAGCCGGGCAGCAGAGGCAGCAGTGCTGCGGCCGGGACGCGG
GAGGAACCGTGGTAATCGCCGCGGTCGGCTGAAGGAGGAAGGTCTCGGGAGCCGGAGAGCGGTC
CTGAGGTCCAGGGAGCGGTCGTCCTCCATCGCCTAGGGCTCTCCCTGTCGTGAGGGACCGGATA
AGAACTTCAGTTTTCTGTTGATGTGGAGACATCGGCTACCTCCAAGTTCCCGGTGCTTCAGAAG
GGACTTTTGTATTGAAGCTGGAAGACCAAAGTCATTGCAAGCATGTTGTGCTGGGGAAACGCAT
CCTATGGACAACTAGGTTTGGGTGGAATTGATGAAGAAATTGTACTAGAGCCCAGGAAAAGTGA
CTTTTTCGTAAATAAAAAGGTCCGAGATGTAGGATGTGGACTCAGACATACTGTGTTCGTCCTG
GACGACGGAACTGTGTACACATGTGGATGTAATGATCTAGGACAGCTAGGTCATGAAAAGTCCA
GAAAGAAACCAGAGCAGGTTGTTGCCCTGGATGCCCAAAATATCGTAGCTGTTTCATGTGGAGA
AGCTCATACATTAGCACTTAATGACAAGGGCCAGGTGTATGCTTGGGGTCTCGACTCTGATGGA
CAGCTTGGCCTGCAAGGATCAGAGGAATGTATCAGAGTACCCAGAAATATTAAAAGTCTTTCGG
ACATCCAGATAGTACAGGTTGCATGTGGTTACTATCATTCACTTGCACTTTCTAAAGCAAGTGA
AGTTTTCTGTTGGGGACAGAATAAATATGGCCAGCTCGGTCTCGGCATTGAATGTCAAAAGCAA
ACCTCACCACAGCTGATTAAGTCTTTGCTTGGAATACCATTCATGCAAGTCGCAGCAGGAGGAG
CCCATAGTTTTGTACTCACCCTTTCTGGAGCTATCTTTGGATGGGGACGTAACAAATTTGGTCA
GCTAGGTCTTAATGATGAGAACGATAGGTATGTTCCTAATTTACTAAAGTCACTAAGATCTCAG
AAAATAGTTTATATTTGTTGCGGAGAAGATCATACTGCTGCATTAACCAAGGAAGGTGGAGTGT
TTACCTTTGGAGCTGGAGGCTATGGCCAGCTGGGTCATAATTCTACCAGTCATGAAATAAACCC
CAGGAAAGTGTTTGAGCTTATGGGAAGCATTGTTACTCAAATTGCTTGTGGAAGGCAGCATACT
TCTGCATTTGTTCCTTCTTCAGGACGAATTTACTCCTTCGGTCTCGGTGGTAATGGGCAGTTGG
GAACTGGTTCAACAAGCAACAGAAAAAGCCCTTTCACTGTAAAAGGAAACTGGTTTTCTTATAA
TGGACAATGTCCACAAGATATTGGTTCTGAAGACTATTTCTGTGTCAAAAGAATTTTCTCAGGT
GGAGATCAAAGCTTTTCACATTACTCTAGTCCTCAGAGCTGTGGACCTCCAGATGACTTTAGAC
GCTCTGACCCTTCAAAGCAGATCTGGACAGTGAATGAAGCTCTGATTCAGAAATGGCTCAGCTA
CCCCTCTGGAAGGTTCCCTGTGGAGATAGCCAATGAGATAGATGGAACATTTTCTTCGTCTGGT
TGCCTAAATGGAAGTTTTCTGGCTGTTAGCAATGATGATCACTATAGAACAGGCACCAGATTTT
CAGGGGTCGACATGAATGCCGCTAGACTCTTATTCCACAGACTCATACAGCCTGACCACCCGCA
GATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAACCTTATCCCTAAACTGACTAGTTCCTTA
CCTGATGTTGAAGCTTTGAGGTTTTATCTTACCCTGCCAGAGTGCCCCCTGATGAGTGACTGCA
ACAATTTCACAACCATAGCAATCCCCTTTGGCACAGCCCTTGTGAACCTAGAAAAAGCACCACT
GAAAGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGATAGTAGAACTT
TTTAAGGAAGTTGTGGTACATCTTTTGAAACTCTACAAGATCGGCATTCCCCCTTCTGAAAGAA
GAATTTTCAACAGTTTTCTTCATACCGCATTAAAGGTTTTAGAAATATTACATAGGGTAAATGA
GAGAACAGGACAACTTATACAGTACGACAAGTTTTACATACATGAAGTCCAAGAGCTGATAGAC
ATAAGGAATGACTATATCAACTGGGTCCAGCAGCAAGCCTATGGAGTGGATGTCAGCCATGGAA
TAACTGAGTTGGCAGATATCCCTGTGACAATTTGTACATATCCATTTGTATTTGATGCCCAGGC
AAAAACTACTCTGCTACAGACAGACGCAGTCTTGCAGATGCAGATGGCTATTGACCAGGCCCAT
AGGCAGAATGTCTCCTCTCTTTTTCTGCCAGTGATTGAGTCTGTGAATCCTTGCTTAATTCTGG
TTGTTCGCAGAGAAAATATTGTAGGAGATGCAATGGAAGTCCTCAGGAAAACCAAGAATATAGA
TTATAAAAAGCCACTCAAAGTTATATTTGTTGGAGAAGATGCTGTTGATGCTGGAGGTGTACGC
AAAGAATTTTTCTTGCTCATCATGAGGGAATTATTGGATCCTAAATATGGCATGTTTCGATATT
ATGAAGATTCCAGGCTTATTTGGTTTTCAGATAAGACATTTGAAGACAGTGATTTGTTCCACTT
AATTGGTGTTATCTGTGGATTAGCAATTTATAATTTTACTATTGTGGACCTCCACTTCCCTTTG
GCTTTATATAAGAAGCTACTGAAAAGGAAGCCATCCCTGGATGATCTGAAAGAGCTGATGCCAG
ATGTAGGGAGAAGCATGCAACAATTGCTGGACTACCCGGAGGACGATATAGAGGAAACATTTTG
TCTAAACTTTACGATCACAGTTGAAAATTTTGGTGCAACAGAAGTGAAAGAGCTGGTTCTGAAT
GGTGCAGACACCGCTGTTAACAAACAGAATCGGCAGGAGTTTGTTGATGCCTATGTGGATTACA
TATTCAATAAATCAGTGGCATCTTTATTTGATGCTTTCCATGCCGGCTTTCATAAGGTCTGTGG
AGGAAAAGTTCTTCTGCTCTTCCAGCCCAATGAATTACAAGCTATGGTTATTGGGAATACAAAT
TATGATTGGAAAGAACTGGAGAAGAATACAGAATACAAAGGAGAGTATTGGGCAGAACATCCCA
CGATAAAAATTTTTTGGGAAGTATTTCATGAATTACCACTAGAAAAGAAGAAACAATTCCTATT
ATTTTTGACAGGTAGTGATCGAATTCCTATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAG
TCAACAGGAGGTGGTGAGAGCTATCTCCCGGTTTCCCATACCTGTTTTAATCTTCTAGATCTCC
CAAAATATACAGAGAAAGAAACCCTACGATGTAAACTGATCCAAGCTATTGATCACAATGAAGG
CTTCAGTTTAATATAACCTTGGAGTTCTGACTTTCTGTTTAGTGCAAAGGCATCAAACTACTCG
TTTTTCTTGTGAATTCAGCAGTGAGAGTTACTTCTGTAATTCTTGCCTAAAAATTGTTCACTAC
TGTACTGATGATGAAAGCCAAAAATTAAAAACTGTACAGAACCATGAATTGTACCATCCTCATA
AACATACAAGTATTGTGAATACATTAAAGTTTTACTAACAGTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006256134 ⟹ XP_006256196

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	25,329,005 - 25,403,423 (-)	NCBI
mRatBN7.2	20	25,330,100 - 25,404,480 (-)	NCBI
Rnor_6.0	20	26,756,176 - 26,831,267 (+)	NCBI
Rnor_5.0	20	8,063,820 - 8,139,150 (+)	NCBI

Sequence:

show sequence

GGAAGGTCTCGGGAGCCGGAGAGCGGTCCTGAGGTCCAGGGAGCGGTCGTCCTCCATCGCCTAG
GGCTCTCCCTGTCGTGAGGGACCGGACATCGGCTACCTCCAAGTTCCCGGTGCTTCAGAAGGGA
CTTTTGTATTGAAGCTGGAAGACCAAAGTCATTGCAAGCATGTTGTGCTGGGGAAACGCATCCT
ATGGACAACTAGGTTTGGGTGGAATTGATGAAGAAATTGTACTAGAGCCCAGGAAAAGTGACTT
TTTCGTAAATAAAAAGGTCCGAGATGTAGGATGTGGACTCAGACATACTGTGTTCGTCCTGGAC
GACGGAACTGTGTACACATGTGGATGTAATGATCTAGGACAGCTAGGTCATGAAAAGTCCAGAA
AGAAACCAGAGCAGGTTGTTGCCCTGGATGCCCAAAATATCGTAGCTGTTTCATGTGGAGAAGC
TCATACATTAGCACTTAATGACAAGGGCCAGGTGTATGCTTGGGGTCTCGACTCTGATGGACAG
CTTGGCCTGCAAGGATCAGAGGAATGTATCAGAGTACCCAGAAATATTAAAAGTCTTTCGGACA
TCCAGATAGTACAGGTTGCATGTGGTTACTATCATTCACTTGCACTTTCTAAAGCAAGTGAAGT
TTTCTGTTGGGGACAGAATAAATATGGCCAGCTCGGTCTCGGCATTGAATGTCAAAAGCAAACC
TCACCACAGCTGATTAAGTCTTTGCTTGGAATACCATTCATGCAAGTCGCAGCAGGAGGAGCCC
ATAGTTTTGTACTCACCCTTTCTGGAGCTATCTTTGGATGGGGACGTAACAAATTTGGTCAGCT
AGGTCTTAATGATGAGAACGATAGGTATGTTCCTAATTTACTAAAGTCACTAAGATCTCAGAAA
ATAGTTTATATTTGTTGCGGAGAAGATCATACTGCTGCATTAACCAAGGAAGGTGGAGTGTTTA
CCTTTGGAGCTGGAGGCTATGGCCAGCTGGGTCATAATTCTACCAGTCATGAAATAAACCCCAG
GAAAGTGTTTGAGCTTATGGGAAGCATTGTTACTCAAATTGCTTGTGGAAGGCAGCATACTTCT
GCATTTGTTCCTTCTTCAGGACGAATTTACTCCTTCGGTCTCGGTGGTAATGGGCAGTTGGGAA
CTGGTTCAACAAGCAACAGAAAAAGCCCTTTCACTGTAAAAGGAAACTGGTTTTCTTATAATGG
ACAATGTCCACAAGATATTGGTTCTGAAGACTATTTCTGTGTCAAAAGAATTTTCTCAGGTGGA
GATCAAAGCTTTTCACATTACTCTAGTCCTCAGAGCTGTGGACCTCCAGATGACTTTAGACGCT
CTGACCCTTCAAAGCAGATCTGGACAGTGAATGAAGCTCTGATTCAGAAATGGCTCAGCTACCC
CTCTGGAAGGTTCCCTGTGGAGATAGCCAATGAGATAGATGGAACATTTTCTTCGTCTGGTTGC
CTAAATGGAAGTTTTCTGGCTGTTAGCAATGATGATCACTATAGAACAGGCACCAGATTTTCAG
GGGTCGACATGAATGCCGCTAGACTCTTATTCCACAGACTCATACAGCCTGACCACCCGCAGAT
ATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGAACCTTATCCCTAAACTGACTAGTTCCTTACCT
GATGTTGAAGCTTTGAGGTTTTATCTTACCCTGCCAGAGTGCCCCCTGATGAGTGACTGCAACA
ATTTCACAACCATAGCAATCCCCTTTGGCACAGCCCTTGTGAACCTAGAAAAAGCACCACTGAA
AGTACTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGATAGTAGAACTTTTT
AAGGAAGTTGTGGTACATCTTTTGAAACTCTACAAGATCGGCATTCCCCCTTCTGAAAGAAGAA
TTTTCAACAGTTTTCTTCATACCGCATTAAAGGTTTTAGAAATATTACATAGGGTAAATGAGAG
AACAGGACAACTTATACAGTACGACAAGTTTTACATACATGAAGTCCAAGAGCTGATAGACATA
AGGAATGACTATATCAACTGGGTCCAGCAGCAAGCCTATGGAGTGGATGTCAGCCATGGAATAA
CTGAGTTGGCAGATATCCCTGTGACAATTTGTACATATCCATTTGTATTTGATGCCCAGGCAAA
AACTACTCTGCTACAGACAGACGCAGTCTTGCAGATGCAGATGGCTATTGACCAGGCCCATAGG
CAGAATGTCTCCTCTCTTTTTCTGCCAGTGATTGAGTCTGTGAATCCTTGCTTAATTCTGGTTG
TTCGCAGAGAAAATATTGTAGGAGATGCAATGGAAGTCCTCAGGAAAACCAAGAATATAGATTA
TAAAAAGCCACTCAAAGTTATATTTGTTGGAGAAGATGCTGTTGATGCTGGAGGTGTACGCAAA
GAATTTTTCTTGCTCATCATGAGGGAATTATTGGATCCTAAATATGGCATGTTTCGATATTATG
AAGATTCCAGGCTTATTTGGTTTTCAGATAAGACATTTGAAGACAGTGATTTGTTCCACTTAAT
TGGTGTTATCTGTGGATTAGCAATTTATAATTTTACTATTGTGGACCTCCACTTCCCTTTGGCT
TTATATAAGAAGCTACTGAAAAGGAAGCCATCCCTGGATGATCTGAAAGAGCTGATGCCAGATG
TAGGGAGAAGCATGCAACAATTGCTGGACTACCCGGAGGACGATATAGAGGAAACATTTTGTCT
AAACTTTACGATCACAGTTGAAAATTTTGGTGCAACAGAAGTGAAAGAGCTGGTTCTGAATGGT
GCAGACACCGCTGTTAACAAACAGAATCGGCAGGAGTTTGTTGATGCCTATGTGGATTACATAT
TCAATAAATCAGTGGCATCTTTATTTGATGCTTTCCATGCCGGCTTTCATAAGGTCTGTGGAGG
AAAAGTTCTTCTGCTCTTCCAGCCCAATGAATTACAAGCTATGGTTATTGGGAATACAAATTAT
GATTGGAAAGAACTGGAGAAGAATACAGAATACAAAGGAGAGTATTGGGCAGAACATCCCACGA
TAAAAATTTTTTGGGAAGTATTTCATGAATTACCACTAGAAAAGAAGAAACAATTCCTATTATT
TTTGACAGGTAGTGATCGAATTCCTATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAGTCA
ACAGGAGGTGGTGAGAGCTATCTCCCGGTTTCCCATACCTGTTTTAATCTTCTAGATCTCCCAA
AATATACAGAGAAAGAAACCCTACGATGTAAACTGATCCAAGCTATTGATCACAATGAAGGCTT
CAGTTTAATATAACCTTGGAGTTCTGACTTTCTGTTTAGTGCAAAGGCATCAAACTACTCGTTT
TTCTTGTGAATTCAGCAGTGAGAGTTACTTCTGTAATTCTTGCCTAAAAATTGTTCACTACTGT
ACTGATGATGAAAGCCAAAAATTAAAAACTGTACAGAACCATGAATTGTACCATCCTCATAAAC
ATACAAGTATTGTGAATACATTAAAGTTTTACTAACAGTAATTTTTAAGAGTTTGCATATTTCA
GAAATGACCTGATGTGTGGGTGCATGGAAATGTTGCTTCAATCACTGGGCTAAAAAAAACAAAA
AACAAAAACAAACTATGGGCCTGCCAATAGTCATTTGATTATTTTTCCATTTTGTAAATAAAGA
TTTTGTAATAAAATAGTGACATTCAGATACCAGTAGTTTCTATTGAACTGAGTTTTAAGGGTTA
TAAATTATGATTCAGTCTGACTTGCAGATTCTACTATAAAAGCATGGTAGAAACAATCTTTTTG
CTACAATAAATGTCCATGAAGACCTAAGACTTAA

hide sequence

RefSeq Acc Id:

XM_006256135 ⟹ XP_006256197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	25,329,005 - 25,403,433 (-)	NCBI
mRatBN7.2	20	25,330,100 - 25,404,544 (-)	NCBI
Rnor_6.0	20	26,756,175 - 26,831,267 (+)	NCBI
Rnor_5.0	20	8,063,820 - 8,139,150 (+)	NCBI

Sequence:

show sequence

AGGAAGGTCTCGGGAGCCGGAGAGCGGTCCTGAGGTCCAGGGAGCGGTCGTCCTCCATCGCCTA
GGGCTCTCCCTGTCGTGAGGGACCGGATAAGAACTTCAGTTTTCTGTTGATGTGGAGACATCGG
CTACCTCCAAGTTCCCGGTGCTTCAGAAGGGACTTTTGTATTGAAGCTGGAAGACCAAAGTCAT
TGCAAGCATGTTGTGCTGGGGAAACGCATCCTATGGACAACTAGGTTTGGGTGGAATTGATGAA
GAAATTGTACTAGAGCCCAGGAAAAGTGACTTTTTCGTAAATAAAAAGGTCCGAGATGTAGGAT
GTGGACTCAGACATACTGTGTTCGTCCTGGACGACGGAACTGTGTACACATGTGGATGTAATGA
TCTAGGACAGCTAGGTCATGAAAAGTCCAGAAAGAAACCAGAGCAGGTTGTTGCCCTGGATGCC
CAAAATATCGTAGCTGTTTCATGTGGAGAAGCTCATACATTAGCACTTAATGACAAGGGCCAGG
TGTATGCTTGGGGTCTCGACTCTGATGGACAGCTTGGCCTGCAAGGATCAGAGGAATGTATCAG
AGTACCCAGAAATATTAAAAGTCTTTCGGACATCCAGATAGTACAGGTTGCATGTGGTTACTAT
CATTCACTTGCACTTTCTAAAGCAAGTGAAGTTTTCTGTTGGGGACAGAATAAATATGGCCAGC
TCGGTCTCGGCATTGAATGTCAAAAGCAAACCTCACCACAGCTGATTAAGTCTTTGCTTGGAAT
ACCATTCATGCAAGTCGCAGCAGGAGGAGCCCATAGTTTTGTACTCACCCTTTCTGGAGCTATC
TTTGGATGGGGACGTAACAAATTTGGTCAGCTAGGTCTTAATGATGAGAACGATAGGTATGTTC
CTAATTTACTAAAGTCACTAAGATCTCAGAAAATAGTTTATATTTGTTGCGGAGAAGATCATAC
TGCTGCATTAACCAAGGAAGGTGGAGTGTTTACCTTTGGAGCTGGAGGCTATGGCCAGCTGGGT
CATAATTCTACCAGTCATGAAATAAACCCCAGGAAAGTGTTTGAGCTTATGGGAAGCATTGTTA
CTCAAATTGCTTGTGGAAGGCAGCATACTTCTGCATTTGTTCCTTCTTCAGGACGAATTTACTC
CTTCGGTCTCGGTGGTAATGGGCAGTTGGGAACTGGTTCAACAAGCAACAGAAAAAGCCCTTTC
ACTGTAAAAGGAAACTGGTTTTCTTATAATGGACAATGTCCACAAGATATTGGTTCTGAAGACT
ATTTCTGTGTCAAAAGAATTTTCTCAGGTGGAGATCAAAGCTTTTCACATTACTCTAGTCCTCA
GAGCTGTGGACCTCCAGATGACTTTAGACGCTCTGACCCTTCAAAGCAGATCTGGACAGTGAAT
GAAGCTCTGATTCAGAAATGGCTCAGCTACCCCTCTGGAAGGTTCCCTGTGGAGATAGCCAATG
AGATAGATGGAACATTTTCTTCGTCTGGTTGCCTAAATGGAAGTTTTCTGGCTGTTAGCAATGA
TGATCACTATAGAACAGGCACCAGATTTTCAGGGGTCGACATGAATGCCGCTAGACTCTTATTC
CACAGACTCATACAGCCTGACCACCCGCAGATATCTCAGCAGGTGGCAGCTAGTTTGGAAAAGA
ACCTTATCCCTAAACTGACTAGTTCCTTACCTGATGTTGAAGCTTTGAGGTTTTATCTTACCCT
GCCAGAGTGCCCCCTGATGAGTGACTGCAACAATTTCACAACCATAGCAATCCCCTTTGGCACA
GCCCTTGTGAACCTAGAAAAAGCACCACTGAAAGTACTTGAAAACTGGTGGTCAGTACTTGAAC
CTCCACTATTCCTCAAGATAGTAGAACTTTTTAAGGAAGTTGTGGTACATCTTTTGAAACTCTA
CAAGATCGGCATTCCCCCTTCTGAAAGAAGAATTTTCAACAGTTTTCTTCATACCGCATTAAAG
GTTTTAGAAATATTACATAGGGTAAATGAGAGAACAGGACAACTTATACAGTACGACAAGTTTT
ACATACATGAAGTCCAAGAGCTGATAGACATAAGGAATGACTATATCAACTGGGTCCAGCAGCA
AGCCTATGGAGTGTTGGCAGATATCCCTGTGACAATTTGTACATATCCATTTGTATTTGATGCC
CAGGCAAAAACTACTCTGCTACAGACAGACGCAGTCTTGCAGATGCAGATGGCTATTGACCAGG
CCCATAGGCAGAATGTCTCCTCTCTTTTTCTGCCAGTGATTGAGTCTGTGAATCCTTGCTTAAT
TCTGGTTGTTCGCAGAGAAAATATTGTAGGAGATGCAATGGAAGTCCTCAGGAAAACCAAGAAT
ATAGATTATAAAAAGCCACTCAAAGTTATATTTGTTGGAGAAGATGCTGTTGATGCTGGAGGTG
TACGCAAAGAATTTTTCTTGCTCATCATGAGGGAATTATTGGATCCTAAATATGGCATGTTTCG
ATATTATGAAGATTCCAGGCTTATTTGGTTTTCAGATAAGACATTTGAAGACAGTGATTTGTTC
CACTTAATTGGTGTTATCTGTGGATTAGCAATTTATAATTTTACTATTGTGGACCTCCACTTCC
CTTTGGCTTTATATAAGAAGCTACTGAAAAGGAAGCCATCCCTGGATGATCTGAAAGAGCTGAT
GCCAGATGTAGGGAGAAGCATGCAACAATTGCTGGACTACCCGGAGGACGATATAGAGGAAACA
TTTTGTCTAAACTTTACGATCACAGTTGAAAATTTTGGTGCAACAGAAGTGAAAGAGCTGGTTC
TGAATGGTGCAGACACCGCTGTTAACAAACAGAATCGGCAGGAGTTTGTTGATGCCTATGTGGA
TTACATATTCAATAAATCAGTGGCATCTTTATTTGATGCTTTCCATGCCGGCTTTCATAAGGTC
TGTGGAGGAAAAGTTCTTCTGCTCTTCCAGCCCAATGAATTACAAGCTATGGTTATTGGGAATA
CAAATTATGATTGGAAAGAACTGGAGAAGAATACAGAATACAAAGGAGAGTATTGGGCAGAACA
TCCCACGATAAAAATTTTTTGGGAAGTATTTCATGAATTACCACTAGAAAAGAAGAAACAATTC
CTATTATTTTTGACAGGTAGTGATCGAATTCCTATTCTTGGTATGAAGAGTCTGAAACTAGTCA
TCCAGTCAACAGGAGGTGGTGAGAGCTATCTCCCGGTTTCCCATACCTGTTTTAATCTTCTAGA
TCTCCCAAAATATACAGAGAAAGAAACCCTACGATGTAAACTGATCCAAGCTATTGATCACAAT
GAAGGCTTCAGTTTAATATAACCTTGGAGTTCTGACTTTCTGTTTAGTGCAAAGGCATCAAACT
ACTCGTTTTTCTTGTGAATTCAGCAGTGAGAGTTACTTCTGTAATTCTTGCCTAAAAATTGTTC
ACTACTGTACTGATGATGAAAGCCAAAAATTAAAAACTGTACAGAACCATGAATTGTACCATCC
TCATAAACATACAAGTATTGTGAATACATTAAAGTTTTACTAACAGTAATTTTTAAGAGTTTGC
ATATTTCAGAAATGACCTGATGTGTGGGTGCATGGAAATGTTGCTTCAATCACTGGGCTAAAAA
AAACAAAAAACAAAAACAAACTATGGGCCTGCCAATAGTCATTTGATTATTTTTCCATTTTGTA
AATAAAGATTTTGTAATAAAATAGTGACATTCAGATACCAGTAGTTTCTATTGAACTGAGTTTT
AAGGGTTATAAATTATGATTCAGTCTGACTTGCAGATTCTACTATAAAAGCATGGTAGAAACAA
TCTTTTTGCTACAATAAATGTCCATGAAGACCTAAGACTTAA

hide sequence

RefSeq Acc Id:

XM_006256136 ⟹ XP_006256198

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	25,329,005 - 25,401,079 (-)	NCBI
mRatBN7.2	20	25,329,972 - 25,402,364 (-)	NCBI
Rnor_6.0	20	26,763,006 - 26,831,267 (+)	NCBI
Rnor_5.0	20	8,063,820 - 8,139,150 (+)	NCBI

Sequence:

show sequence

GACCCCACATCTGAGGAATCTCAAGAGCATTACACAATAATTCATGGTTCCTTTCAAAATGCTT
GTGACACAAATTGCAAGAATTATCCTCATCTTAGGGGATAAGTTTTCGGAGAAATGGCAGCACA
AGTTGAGCAGGTTGTTGCCCTGGATGCCCAAAATATCGTAGCTGTTTCATGTGGAGAAGCTCAT
ACATTAGCACTTAATGACAAGGGCCAGGTGTATGCTTGGGGTCTCGACTCTGATGGACAGCTTG
GCCTGCAAGGATCAGAGGAATGTATCAGAGTACCCAGAAATATTAAAAGTCTTTCGGACATCCA
GATAGTACAGGTTGCATGTGGTTACTATCATTCACTTGCACTTTCTAAAGCAAGTGAAGTTTTC
TGTTGGGGACAGAATAAATATGGCCAGCTCGGTCTCGGCATTGAATGTCAAAAGCAAACCTCAC
CACAGCTGATTAAGTCTTTGCTTGGAATACCATTCATGCAAGTCGCAGCAGGAGGAGCCCATAG
TTTTGTACTCACCCTTTCTGGAGCTATCTTTGGATGGGGACGTAACAAATTTGGTCAGCTAGGT
CTTAATGATGAGAACGATAGGTATGTTCCTAATTTACTAAAGTCACTAAGATCTCAGAAAATAG
TTTATATTTGTTGCGGAGAAGATCATACTGCTGCATTAACCAAGGAAGGTGGAGTGTTTACCTT
TGGAGCTGGAGGCTATGGCCAGCTGGGTCATAATTCTACCAGTCATGAAATAAACCCCAGGAAA
GTGTTTGAGCTTATGGGAAGCATTGTTACTCAAATTGCTTGTGGAAGGCAGCATACTTCTGCAT
TTGTTCCTTCTTCAGGACGAATTTACTCCTTCGGTCTCGGTGGTAATGGGCAGTTGGGAACTGG
TTCAACAAGCAACAGAAAAAGCCCTTTCACTGTAAAAGGAAACTGGTTTTCTTATAATGGACAA
TGTCCACAAGATATTGGTTCTGAAGACTATTTCTGTGTCAAAAGAATTTTCTCAGGTGGAGATC
AAAGCTTTTCACATTACTCTAGTCCTCAGAGCTGTGGACCTCCAGATGACTTTAGACGCTCTGA
CCCTTCAAAGCAGATCTGGACAGTGAATGAAGCTCTGATTCAGAAATGGCTCAGCTACCCCTCT
GGAAGGTTCCCTGTGGAGATAGCCAATGAGATAGATGGAACATTTTCTTCGTCTGGTTGCCTAA
ATGGAAGTTTTCTGGCTGTTAGCAATGATGATCACTATAGAACAGGCACCAGATTTTCAGGGGT
CGACATGAATGCCGCTAGACTCTTATTCCACAGACTCATACAGCCTGACCACCCGCAGATATCT
CAGCAGGTGGCAGCTAGTTTGGAAAAGAACCTTATCCCTAAACTGACTAGTTCCTTACCTGATG
TTGAAGCTTTGAGGTTTTATCTTACCCTGCCAGAGTGCCCCCTGATGAGTGACTGCAACAATTT
CACAACCATAGCAATCCCCTTTGGCACAGCCCTTGTGAACCTAGAAAAAGCACCACTGAAAGTA
CTTGAAAACTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGATAGTAGAACTTTTTAAGG
AAGTTGTGGTACATCTTTTGAAACTCTACAAGATCGGCATTCCCCCTTCTGAAAGAAGAATTTT
CAACAGTTTTCTTCATACCGCATTAAAGGTTTTAGAAATATTACATAGGGTAAATGAGAGAACA
GGACAACTTATACAGTACGACAAGTTTTACATACATGAAGTCCAAGAGCTGATAGACATAAGGA
ATGACTATATCAACTGGGTCCAGCAGCAAGCCTATGGAGTGGATGTCAGCCATGGAATAACTGA
GTTGGCAGATATCCCTGTGACAATTTGTACATATCCATTTGTATTTGATGCCCAGGCAAAAACT
ACTCTGCTACAGACAGACGCAGTCTTGCAGATGCAGATGGCTATTGACCAGGCCCATAGGCAGA
ATGTCTCCTCTCTTTTTCTGCCAGTGATTGAGTCTGTGAATCCTTGCTTAATTCTGGTTGTTCG
CAGAGAAAATATTGTAGGAGATGCAATGGAAGTCCTCAGGAAAACCAAGAATATAGATTATAAA
AAGCCACTCAAAGTTATATTTGTTGGAGAAGATGCTGTTGATGCTGGAGGTGTACGCAAAGAAT
TTTTCTTGCTCATCATGAGGGAATTATTGGATCCTAAATATGGCATGTTTCGATATTATGAAGA
TTCCAGGCTTATTTGGTTTTCAGATAAGACATTTGAAGACAGTGATTTGTTCCACTTAATTGGT
GTTATCTGTGGATTAGCAATTTATAATTTTACTATTGTGGACCTCCACTTCCCTTTGGCTTTAT
ATAAGAAGCTACTGAAAAGGAAGCCATCCCTGGATGATCTGAAAGAGCTGATGCCAGATGTAGG
GAGAAGCATGCAACAATTGCTGGACTACCCGGAGGACGATATAGAGGAAACATTTTGTCTAAAC
TTTACGATCACAGTTGAAAATTTTGGTGCAACAGAAGTGAAAGAGCTGGTTCTGAATGGTGCAG
ACACCGCTGTTAACAAACAGAATCGGCAGGAGTTTGTTGATGCCTATGTGGATTACATATTCAA
TAAATCAGTGGCATCTTTATTTGATGCTTTCCATGCCGGCTTTCATAAGGTCTGTGGAGGAAAA
GTTCTTCTGCTCTTCCAGCCCAATGAATTACAAGCTATGGTTATTGGGAATACAAATTATGATT
GGAAAGAACTGGAGAAGAATACAGAATACAAAGGAGAGTATTGGGCAGAACATCCCACGATAAA
AATTTTTTGGGAAGTATTTCATGAATTACCACTAGAAAAGAAGAAACAATTCCTATTATTTTTG
ACAGGTAGTGATCGAATTCCTATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAGTCAACAG
GAGGTGGTGAGAGCTATCTCCCGGTTTCCCATACCTGTTTTAATCTTCTAGATCTCCCAAAATA
TACAGAGAAAGAAACCCTACGATGTAAACTGATCCAAGCTATTGATCACAATGAAGGCTTCAGT
TTAATATAACCTTGGAGTTCTGACTTTCTGTTTAGTGCAAAGGCATCAAACTACTCGTTTTTCT
TGTGAATTCAGCAGTGAGAGTTACTTCTGTAATTCTTGCCTAAAAATTGTTCACTACTGTACTG
ATGATGAAAGCCAAAAATTAAAAACTGTACAGAACCATGAATTGTACCATCCTCATAAACATAC
AAGTATTGTGAATACATTAAAGTTTTACTAACAGTAATTTTTAAGAGTTTGCATATTTCAGAAA
TGACCTGATGTGTGGGTGCATGGAAATGTTGCTTCAATCACTGGGCTAAAAAAAACAAAAAACA
AAAACAAACTATGGGCCTGCCAATAGTCATTTGATTATTTTTCCATTTTGTAAATAAAGATTTT
GTAATAAAATAGTGACATTCAGATACCAGTAGTTTCTATTGAACTGAGTTTTAAGGGTTATAAA
TTATGATTCAGTCTGACTTGCAGATTCTACTATAAAAGCATGGTAGAAACAATCTTTTTGCTAC
AATAAATGTCCATGAAGACCTAAGACTTAA

hide sequence

RefSeq Acc Id:

XM_017601656 ⟹ XP_017457145

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	25,329,005 - 25,403,026 (-)	NCBI
mRatBN7.2	20	25,330,100 - 25,403,369 (-)	NCBI
Rnor_6.0	20	26,756,278 - 26,831,267 (+)	NCBI

Sequence:

show sequence

CCGGTGGGTTCGGGGTAGTGTGACGGAGGCGAGCTCCGCTGGGGCCTTGGTGAAGGGCGCCAGC
GTCTTCAGCGTTTCCCGGAGCTGGAGTGTTGCACTGTCCTAAGGGAAAGGGTCTCCCTGGGACC
GAGGCTGTGGGGGCCGAGCCCGGTGGGGCGGACTCTCCCCGATTCGCCAGTAGCTGGTCGGTCC
GCGAGGATGAGTGTGTGCAGACCATTCCTCTTCTCCGGGCCGCGGGAGCTGATCGTGTGGTGCA
TGGTCAGGGAAAGAGGAAACCAAACTGCTTTCCGTTCTCCTACCTGTTGCTGACGTGAGAACGT
CTTTCCAATACCGGTTCTGACTTTTGGAGTAAAAAAAAAAAAAAGGGTGCCCAAACGAAGCGCG
TTGAAATCGGAGATGTGGTCCTGTCTTATGCTAGCCTTGAAAAAAAAAGAGAGAGATACGGAAA
GACAATGCAGAACTCTCTGGAACTTTCGAGTTTTGGTGTCTCAAAGGGATGAAACCAAAGTTCT
GCTGATGGGAGTGGAGCGAGACAGCTTCGGCACTTTCTAAAGAAACATAAATACAGGAAAATTA
TGTTTTGAAACCTTAGGTTCGGTGTAAGGAATTTAGGTGATCTTGGACAGCAAGGATAAGACTG
ACTTCTAGTAGTCCTTCTTAATGCACCCTGGTTTTTAAAGAAATGTGCAGGTTTAGCGGAGAAG
GACTAGCTTGTGTCTTTTTTATGTAAATGAAGGTTTTCCTCACGTGTTTGTGCACCATGTGTGT
GCCTAGTGCAGGAGGCCAGAAGAGGGCGTAGGGTTGAATTCCCTGGGACTAGTTACACACAGTG
TGCAAACAGAGCAGCTATGTGGGTGCTGGGAATTGAATCAGGATCTTTTAAAAGAGCAAGCAGT
CCCCTTAACCTTTGAGCCATCTCTCAGCCCCTCATGTATATCTTTTCAAGCCTAGAAGTTATGT
AGATTTTCCTATCAAAGTTAATCCCGCCTCCAACCCTTTCTTATTTTGAAAAAAATCAGCAGTC
CTGGGATTGTTTACAATTTGTTTTTCATCTTCAAAAGTCCTAGAGATAAGAACTTCAGTTTTCT
GTTGATGTGGAGACATCGGCTACCTCCAAGTTCCCGGTGCTTCAGAAGGGACTTTTGTATTGAA
GCTGGAAGACCAAAGTCATTGCAAGCATGTTGTGCTGGGGAAACGCATCCTATGGACAACTAGG
TTTGGGTGGAATTGATGAAGAAATTGTACTAGAGCCCAGGAAAAGTGACTTTTTCGTAAATAAA
AAGGTCCGAGATGTAGGATGTGGACTCAGACATACTGTGTTCGTCCTGGACGACGGAACTGTGT
ACACATGTGGATGTAATGATCTAGGACAGCTAGGTCATGAAAAGTCCAGAAAGAAACCAGAGCA
GGTTGTTGCCCTGGATGCCCAAAATATCGTAGCTGTTTCATGTGGAGAAGCTCATACATTAGCA
CTTAATGACAAGGGCCAGGTGTATGCTTGGGGTCTCGACTCTGATGGACAGCTTGGCCTGCAAG
GATCAGAGGAATGTATCAGAGTACCCAGAAATATTAAAAGTCTTTCGGACATCCAGATAGTACA
GGTTGCATGTGGTTACTATCATTCACTTGCACTTTCTAAAGCAAGTGAAGTTTTCTGTTGGGGA
CAGAATAAATATGGCCAGCTCGGTCTCGGCATTGAATGTCAAAAGCAAACCTCACCACAGCTGA
TTAAGTCTTTGCTTGGAATACCATTCATGCAAGTCGCAGCAGGAGGAGCCCATAGTTTTGTACT
CACCCTTTCTGGAGCTATCTTTGGATGGGGACGTAACAAATTTGGTCAGCTAGGTCTTAATGAT
GAGAACGATAGGTATGTTCCTAATTTACTAAAGTCACTAAGATCTCAGAAAATAGTTTATATTT
GTTGCGGAGAAGATCATACTGCTGCATTAACCAAGGAAGGTGGAGTGTTTACCTTTGGAGCTGG
AGGCTATGGCCAGCTGGGTCATAATTCTACCAGTCATGAAATAAACCCCAGGAAAGTGTTTGAG
CTTATGGGAAGCATTGTTACTCAAATTGCTTGTGGAAGGCAGCATACTTCTGCATTTGTTCCTT
CTTCAGGACGAATTTACTCCTTCGGTCTCGGTGGTAATGGGCAGTTGGGAACTGGTTCAACAAG
CAACAGAAAAAGCCCTTTCACTGTAAAAGGAAACTGGTTTTCTTATAATGGACAATGTCCACAA
GATATTGGTTCTGAAGACTATTTCTGTGTCAAAAGAATTTTCTCAGGTGGAGATCAAAGCTTTT
CACATTACTCTAGTCCTCAGAGCTGTGGACCTCCAGATGACTTTAGACGCTCTGACCCTTCAAA
GCAGATCTGGACAGTGAATGAAGCTCTGATTCAGAAATGGCTCAGCTACCCCTCTGGAAGGTTC
CCTGTGGAGATAGCCAATGAGATAGATGGAACATTTTCTTCGTCTGGTTGCCTAAATGGAAGTT
TTCTGGCTGTTAGCAATGATGATCACTATAGAACAGGCACCAGATTTTCAGGGGTCGACATGAA
TGCCGCTAGACTCTTATTCCACAGACTCATACAGCCTGACCACCCGCAGATATCTCAGCAGGTG
GCAGCTAGTTTGGAAAAGAACCTTATCCCTAAACTGACTAGTTCCTTACCTGATGTTGAAGCTT
TGAGGTTTTATCTTACCCTGCCAGAGTGCCCCCTGATGAGTGACTGCAACAATTTCACAACCAT
AGCAATCCCCTTTGGCACAGCCCTTGTGAACCTAGAAAAAGCACCACTGAAAGTACTTGAAAAC
TGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGATAGTAGAACTTTTTAAGGAAGTTGTGG
TACATCTTTTGAAACTCTACAAGATCGGCATTCCCCCTTCTGAAAGAAGAATTTTCAACAGTTT
TCTTCATACCGCATTAAAGGTTTTAGAAATATTACATAGGGTAAATGAGAGAACAGGACAACTT
ATACAGTACGACAAGTTTTACATACATGAAGTCCAAGAGCTGATAGACATAAGGAATGACTATA
TCAACTGGGTCCAGCAGCAAGCCTATGGAGTGGATGTCAGCCATGGAATAACTGAGTTGGCAGA
TATCCCTGTGACAATTTGTACATATCCATTTGTATTTGATGCCCAGGCAAAAACTACTCTGCTA
CAGACAGACGCAGTCTTGCAGATGCAGATGGCTATTGACCAGGCCCATAGGCAGAATGTCTCCT
CTCTTTTTCTGCCAGTGATTGAGTCTGTGAATCCTTGCTTAATTCTGGTTGTTCGCAGAGAAAA
TATTGTAGGAGATGCAATGGAAGTCCTCAGGAAAACCAAGAATATAGATTATAAAAAGCCACTC
AAAGTTATATTTGTTGGAGAAGATGCTGTTGATGCTGGAGGTGTACGCAAAGAATTTTTCTTGC
TCATCATGAGGGAATTATTGGATCCTAAATATGGCATGTTTCGATATTATGAAGATTCCAGGCT
TATTTGGTTTTCAGATAAGACATTTGAAGACAGTGATTTGTTCCACTTAATTGGTGTTATCTGT
GGATTAGCAATTTATAATTTTACTATTGTGGACCTCCACTTCCCTTTGGCTTTATATAAGAAGC
TACTGAAAAGGAAGCCATCCCTGGATGATCTGAAAGAGCTGATGCCAGATGTAGGGAGAAGCAT
GCAACAATTGCTGGACTACCCGGAGGACGATATAGAGGAAACATTTTGTCTAAACTTTACGATC
ACAGTTGAAAATTTTGGTGCAACAGAAGTGAAAGAGCTGGTTCTGAATGGTGCAGACACCGCTG
TTAACAAACAGAATCGGCAGGAGTTTGTTGATGCCTATGTGGATTACATATTCAATAAATCAGT
GGCATCTTTATTTGATGCTTTCCATGCCGGCTTTCATAAGGTCTGTGGAGGAAAAGTTCTTCTG
CTCTTCCAGCCCAATGAATTACAAGCTATGGTTATTGGGAATACAAATTATGATTGGAAAGAAC
TGGAGAAGAATACAGAATACAAAGGAGAGTATTGGGCAGAACATCCCACGATAAAAATTTTTTG
GGAAGTATTTCATGAATTACCACTAGAAAAGAAGAAACAATTCCTATTATTTTTGACAGGTAGT
GATCGAATTCCTATTCTTGGTATGAAGAGTCTGAAACTAGTCATCCAGTCAACAGGAGGTGGTG
AGAGCTATCTCCCGGTTTCCCATACCTGTTTTAATCTTCTAGATCTCCCAAAATATACAGAGAA
AGAAACCCTACGATGTAAACTGATCCAAGCTATTGATCACAATGAAGGCTTCAGTTTAATATAA
CCTTGGAGTTCTGACTTTCTGTTTAGTGCAAAGGCATCAAACTACTCGTTTTTCTTGTGAATTC
AGCAGTGAGAGTTACTTCTGTAATTCTTGCCTAAAAATTGTTCACTACTGTACTGATGATGAAA
GCCAAAAATTAAAAACTGTACAGAACCATGAATTGTACCATCCTCATAAACATACAAGTATTGT
GAATACATTAAAGTTTTACTAACAGTAATTTTTAAGAGTTTGCATATTTCAGAAATGACCTGAT
GTGTGGGTGCATGGAAATGTTGCTTCAATCACTGGGCTAAAAAAAACAAAAAACAAAAACAAAC
TATGGGCCTGCCAATAGTCATTTGATTATTTTTCCATTTTGTAAATAAAGATTTTGTAATAAAA
TAGTGACATTCAGATACCAGTAGTTTCTATTGAACTGAGTTTTAAGGGTTATAAATTATGATTC
AGTCTGACTTGCAGATTCTACTATAAAAGCATGGTAGAAACAATCTTTTTGCTACAATAAATGT
CCATGAAGACCTAAGACTTAA

hide sequence

RefSeq Acc Id:

XM_039098756 ⟹ XP_038954684

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	25,329,005 - 25,403,424 (-)	NCBI
mRatBN7.2	20	25,330,100 - 25,404,544 (-)	NCBI

RefSeq Acc Id:

XM_039098757 ⟹ XP_038954685

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	25,329,005 - 25,403,424 (-)	NCBI
mRatBN7.2	20	25,330,100 - 25,404,544 (-)	NCBI

RefSeq Acc Id:

XM_039098758 ⟹ XP_038954686

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	25,329,005 - 25,376,943 (-)	NCBI
mRatBN7.2	20	25,329,972 - 25,378,237 (-)	NCBI

RefSeq Acc Id:

XM_039098759 ⟹ XP_038954687

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	25,329,005 - 25,366,384 (-)	NCBI
mRatBN7.2	20	25,329,972 - 25,367,659 (-)	NCBI

RefSeq Acc Id:

XM_063279170 ⟹ XP_063135240

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	25,329,005 - 25,403,026 (-)	NCBI

RefSeq Acc Id:

XM_063279171 ⟹ XP_063135241

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	25,329,005 - 25,403,443 (-)	NCBI

RefSeq Acc Id:

XM_063279172 ⟹ XP_063135242

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	25,329,005 - 25,403,423 (-)	NCBI

RefSeq Acc Id:

XR_005497262

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	25,348,722 - 25,403,425 (-)	NCBI
mRatBN7.2	20	25,349,995 - 25,404,544 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001012074	(Get FASTA)	NCBI Sequence Viewer
	XP_006256196	(Get FASTA)	NCBI Sequence Viewer
	XP_006256197	(Get FASTA)	NCBI Sequence Viewer
	XP_006256198	(Get FASTA)	NCBI Sequence Viewer
	XP_017457145	(Get FASTA)	NCBI Sequence Viewer
	XP_038954684	(Get FASTA)	NCBI Sequence Viewer
	XP_038954685	(Get FASTA)	NCBI Sequence Viewer
	XP_038954686	(Get FASTA)	NCBI Sequence Viewer
	XP_038954687	(Get FASTA)	NCBI Sequence Viewer
	XP_063135240	(Get FASTA)	NCBI Sequence Viewer
	XP_063135241	(Get FASTA)	NCBI Sequence Viewer
	XP_063135242	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87104	(Get FASTA)	NCBI Sequence Viewer
	EDL97353	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000072219
	ENSRNOP00000072219.1
	ENSRNOP00000082108
GenBank Protein	Q5PQN1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001012074 ⟸ NM_001012074

- UniProtKB:

Q5PQN1 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MLCWGNASYGQLGLGGIDEEIVLEPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLG
QLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVP
RNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIPF
MQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAA
LTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFG
LGGNGQLGTGSTSNRKSPFTVKGNWFSYNGQCPQDIGSEDYFCVKRIFSGGDQSFSHYSSPQSC
GPPDDFRRSDPSKQIWTVNEALIQKWLSYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDH
YRTGTRFSGVDMNAARLLFHRLIQPDHPQISQQVAASLEKNLIPKLTSSLPDVEALRFYLTLPE
CPLMSDCNNFTTIAIPFGTALVNLEKAPLKVLENWWSVLEPPLFLKIVELFKEVVVHLLKLYKI
GIPPSERRIFNSFLHTALKVLEILHRVNERTGQLIQYDKFYIHEVQELIDIRNDYINWVQQQAY
GVDVSHGITELADIPVTICTYPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLFLPVIES
VNPCLILVVRRENIVGDAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDP
KYGMFRYYEDSRLIWFSDKTFEDSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLD
DLKELMPDVGRSMQQLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEF
VDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKG
EYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQSTGGGESYLPVSHT
CFNLLDLPKYTEKETLRCKLIQAIDHNEGFSLI

hide sequence

RefSeq Acc Id:	XP_006256197 ⟸ XM_006256135
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZWE9 (UniProtKB/TrEMBL), A6JKY7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLCWGNASYGQLGLGGIDEEIVLEPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLG QLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVP RNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIPF MQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAA LTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFG LGGNGQLGTGSTSNRKSPFTVKGNWFSYNGQCPQDIGSEDYFCVKRIFSGGDQSFSHYSSPQSC GPPDDFRRSDPSKQIWTVNEALIQKWLSYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDH YRTGTRFSGVDMNAARLLFHRLIQPDHPQISQQVAASLEKNLIPKLTSSLPDVEALRFYLTLPE CPLMSDCNNFTTIAIPFGTALVNLEKAPLKVLENWWSVLEPPLFLKIVELFKEVVVHLLKLYKI GIPPSERRIFNSFLHTALKVLEILHRVNERTGQLIQYDKFYIHEVQELIDIRNDYINWVQQQAY GVLADIPVTICTYPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLFLPVIESVNPCLILV VRRENIVGDAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYY EDSRLIWFSDKTFEDSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLDDLKELMPD VGRSMQQLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEFVDAYVDYI FNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWAEHPT IKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQSTGGGESYLPVSHTCFNLLDLP KYTEKETLRCKLIQAIDHNEGFSLI hide sequence

RefSeq Acc Id:	XP_006256196 ⟸ XM_006256134
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQN1 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MLCWGNASYGQLGLGGIDEEIVLEPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLG QLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVP RNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIPF MQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAA LTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFG LGGNGQLGTGSTSNRKSPFTVKGNWFSYNGQCPQDIGSEDYFCVKRIFSGGDQSFSHYSSPQSC GPPDDFRRSDPSKQIWTVNEALIQKWLSYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDH YRTGTRFSGVDMNAARLLFHRLIQPDHPQISQQVAASLEKNLIPKLTSSLPDVEALRFYLTLPE CPLMSDCNNFTTIAIPFGTALVNLEKAPLKVLENWWSVLEPPLFLKIVELFKEVVVHLLKLYKI GIPPSERRIFNSFLHTALKVLEILHRVNERTGQLIQYDKFYIHEVQELIDIRNDYINWVQQQAY GVDVSHGITELADIPVTICTYPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLFLPVIES VNPCLILVVRRENIVGDAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDP KYGMFRYYEDSRLIWFSDKTFEDSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLD DLKELMPDVGRSMQQLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEF VDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKG EYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQSTGGGESYLPVSHT CFNLLDLPKYTEKETLRCKLIQAIDHNEGFSLI hide sequence

RefSeq Acc Id:

XP_006256198 ⟸ XM_006256136

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAAQVEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVPRNIKSL
SDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIPFMQVAAG
GAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGG
VFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFGLGGNGQ
LGTGSTSNRKSPFTVKGNWFSYNGQCPQDIGSEDYFCVKRIFSGGDQSFSHYSSPQSCGPPDDF
RRSDPSKQIWTVNEALIQKWLSYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDHYRTGTR
FSGVDMNAARLLFHRLIQPDHPQISQQVAASLEKNLIPKLTSSLPDVEALRFYLTLPECPLMSD
CNNFTTIAIPFGTALVNLEKAPLKVLENWWSVLEPPLFLKIVELFKEVVVHLLKLYKIGIPPSE
RRIFNSFLHTALKVLEILHRVNERTGQLIQYDKFYIHEVQELIDIRNDYINWVQQQAYGVDVSH
GITELADIPVTICTYPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLFLPVIESVNPCLI
LVVRRENIVGDAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFR
YYEDSRLIWFSDKTFEDSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLDDLKELM
PDVGRSMQQLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEFVDAYVD
YIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWAEH
PTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQSTGGGESYLPVSHTCFNLLD
LPKYTEKETLRCKLIQAIDHNEGFSLI

hide sequence

RefSeq Acc Id:	XP_017457145 ⟸ XM_017601656
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQN1 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MLCWGNASYGQLGLGGIDEEIVLEPRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLG QLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVP RNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGIECQKQTSPQLIKSLLGIPF MQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAA LTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQIACGRQHTSAFVPSSGRIYSFG LGGNGQLGTGSTSNRKSPFTVKGNWFSYNGQCPQDIGSEDYFCVKRIFSGGDQSFSHYSSPQSC GPPDDFRRSDPSKQIWTVNEALIQKWLSYPSGRFPVEIANEIDGTFSSSGCLNGSFLAVSNDDH YRTGTRFSGVDMNAARLLFHRLIQPDHPQISQQVAASLEKNLIPKLTSSLPDVEALRFYLTLPE CPLMSDCNNFTTIAIPFGTALVNLEKAPLKVLENWWSVLEPPLFLKIVELFKEVVVHLLKLYKI GIPPSERRIFNSFLHTALKVLEILHRVNERTGQLIQYDKFYIHEVQELIDIRNDYINWVQQQAY GVDVSHGITELADIPVTICTYPFVFDAQAKTTLLQTDAVLQMQMAIDQAHRQNVSSLFLPVIES VNPCLILVVRRENIVGDAMEVLRKTKNIDYKKPLKVIFVGEDAVDAGGVRKEFFLLIMRELLDP KYGMFRYYEDSRLIWFSDKTFEDSDLFHLIGVICGLAIYNFTIVDLHFPLALYKKLLKRKPSLD DLKELMPDVGRSMQQLLDYPEDDIEETFCLNFTITVENFGATEVKELVLNGADTAVNKQNRQEF VDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKG EYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSLKLVIQSTGGGESYLPVSHT CFNLLDLPKYTEKETLRCKLIQAIDHNEGFSLI hide sequence

Ensembl Acc Id:

ENSRNOP00000072219 ⟸ ENSRNOT00000083017

RefSeq Acc Id:	XP_038954686 ⟸ XM_039098758
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038954687 ⟸ XM_039098759
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038954685 ⟸ XM_039098757
- Peptide Label:	isoform X5
- UniProtKB:	A6JKY6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954684 ⟸ XM_039098756
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000082108 ⟸ ENSRNOT00000107240

RefSeq Acc Id:	XP_063135241 ⟸ XM_063279171
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZWE9 (UniProtKB/TrEMBL), A6JKY7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135242 ⟸ XM_063279172
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063135240 ⟸ XM_063279170
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZWE9 (UniProtKB/TrEMBL), A6JKY7 (UniProtKB/TrEMBL)

Protein Domains

HECT

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5PQN1-F1-model_v2	AlphaFold	Q5PQN1	1-1057	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701566

Promoter ID:

EPDNEW_R12090

Type:

initiation region

Name:

Herc4_1

Description:

HECT and RLD domain containing E3 ubiquitin protein ligase 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	26,756,026 - 26,756,086	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310971	AgrOrtholog
BioCyc Gene	G2FUF-3819	BioCyc
Ensembl Genes	ENSRNOG00000061040	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000083017	ENTREZGENE
	ENSRNOT00000083017.2	UniProtKB/Swiss-Prot
	ENSRNOT00000107240	ENTREZGENE
Gene3D-CATH	2.130.10.30	UniProtKB/Swiss-Prot
	Hect, E3 ligase catalytic domain	UniProtKB/Swiss-Prot
	Hect, E3 ligase catalytic domain	UniProtKB/Swiss-Prot
	Hect, E3 ligase catalytic domains	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7192894	IMAGE-MGC_LOAD
InterPro	HECT_dom	UniProtKB/Swiss-Prot
	Hect_E3_ubiquitin_ligase	UniProtKB/Swiss-Prot
	RCC1/BLIP-II	UniProtKB/Swiss-Prot
	Reg_chr_condens	UniProtKB/Swiss-Prot
	Ub-ligase/GTPase-reg	UniProtKB/Swiss-Prot
KEGG Report	rno:309758	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94698	IMAGE-MGC_LOAD
NCBI Gene	309758	ENTREZGENE
PANTHER	REGULATOR OF CHROMOSOME CONDENSATION DOMAIN-CONTAINING PROTEIN	UniProtKB/Swiss-Prot
	UBIQUITIN-PROTEIN LIGASE E3A-RELATED	UniProtKB/Swiss-Prot
Pfam	HECT	UniProtKB/Swiss-Prot
	WD40_RLD	UniProtKB/Swiss-Prot
PhenoGen	Herc4	PhenoGen
PRINTS	RCCNDNSATION	UniProtKB/Swiss-Prot
PROSITE	HECT	UniProtKB/Swiss-Prot
	RCC1_2	UniProtKB/Swiss-Prot
	RCC1_3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000061040	RatGTEx
SMART	HECTc	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF50985	UniProtKB/Swiss-Prot
	SSF56204	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZWE9	ENTREZGENE, UniProtKB/TrEMBL
	A6JKY6	ENTREZGENE, UniProtKB/TrEMBL
	A6JKY7	ENTREZGENE, UniProtKB/TrEMBL
	HERC4_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-07-17	Herc4	HECT and RLD domain containing E3 ubiquitin protein ligase 4	Herc4	hect domain and RLD 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Herc4	hect domain and RLD 4	Herc4_predicted	hect domain and RLD 4 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Herc4_predicted	hect domain and RLD 4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - KEGG (archival)