Advanced Search (OLGA)

Gene: Ino80 (INO80 complex ATPase subunit) Rattus norvegicus

Analyze

Symbol:

Ino80

Name:

INO80 complex ATPase subunit

RGD ID:

1310969

Description:

Predicted to enable several functions, including ATP hydrolysis activity; alpha-tubulin binding activity; and histone binding activity. Predicted to be involved in several processes, including DNA metabolic process; cellular response to ionizing radiation; and regulation of nucleobase-containing compound metabolic process. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Orthologous to human INO80 (INO80 complex ATPase subunit); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; amphetamine.

Type:

protein-coding

RefSeq Status:

INFERRED

Previously known as:

chromatin-remodeling ATPase INO80; DNA helicase INO80; INO80 complex homolog 1; INO80 complex homolog 1 (S. cerevisiae); INO80 complex subunit; INO80 homolog; INO80 homolog (S. cerevisiae); Inoc1; LOC296084; putative DNA helicase INO80 complex homolog 1; RGD1310969; similar to KIAA1259 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	INO80 (INO80 complex ATPase subunit)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Ino80 (INO80 complex subunit)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ino80 (INO80 complex ATPase subunit)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	INO80 (INO80 complex ATPase subunit)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	INO80 (INO80 complex ATPase subunit)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ino80 (INO80 complex ATPase subunit)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	INO80 (INO80 complex ATPase subunit)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	INO80 (INO80 complex ATPase subunit)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ino80 (INO80 complex ATPase subunit)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ino80 (INO80 complex ATPase subunit)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ino80 (INO80 complex subunit)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	INO80 (INO80 complex ATPase subunit)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ino80 (INO80 complex subunit)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	INO80	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ino80	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Ino80	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	126,822,280 - 126,919,532 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	126,822,280 - 126,919,532 (-)	Ensembl				GRCr8
mRatBN7.2	3	106,368,455 - 106,465,716 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	106,368,455 - 106,467,911 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	110,041,693 - 110,137,309 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	118,637,234 - 118,732,853 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	116,297,616 - 116,393,247 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	111,186,371 - 111,266,542 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	111,187,711 - 111,266,542 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	117,737,293 - 117,817,221 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	105,898,279 - 105,979,698 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	105,280,824 - 105,360,318 (-)	NCBI		Celera
RGSC_v3.1	3	105,796,041 - 105,876,126 (-)	NCBI
Cytogenetic Map	3	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

epilepsy (ISO)

intellectual disability (ISO)

microcephaly (ISO)

primary microcephaly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

amphetamine (EXP)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

Bisphenol A diglycidyl ether (ISO)

bisphenol AF (ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

clobetasol (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

cypermethrin (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

indometacin (ISO)

isoflurane (ISO)

L-methionine (ISO)

lead(0) (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

pinostrobin (ISO)

quercetin (ISO)

sevoflurane (ISO)

sodium arsenite (EXP)

sunitinib (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cell division (IEA)

cellular response to ionizing radiation (IEA,ISO)

cellular response to UV (IEA,ISO)

chromatin remodeling (IBA,IEA,ISO)

chromosome organization (IEA)

DNA damage response (IEA)

DNA metabolic process (IEA)

DNA recombination (IEA)

DNA repair (IBA,IEA)

DNA-templated transcription (IEA)

double-strand break repair (IEA,ISO)

double-strand break repair via homologous recombination (IEA,ISO)

mitotic sister chromatid segregation (IEA,ISO)

positive regulation of cell growth (IEA,ISO)

positive regulation of DNA metabolic process (IEA)

positive regulation of DNA repair (IEA,ISO)

positive regulation of DNA-templated transcription (IEA,ISO)

positive regulation of nuclear cell cycle DNA replication (IEA,ISO)

positive regulation of telomere maintenance in response to DNA damage (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IEA,ISO)

regulation of cell cycle (IEA,ISO)

regulation of chromosome organization (IEA,ISO)

regulation of DNA repair (IEA,ISO)

regulation of DNA replication (IEA,ISO)

regulation of DNA strand elongation (IEA,ISO)

regulation of embryonic development (IEA,ISO)

regulation of G1/S transition of mitotic cell cycle (IEA,ISO)

spindle assembly (IEA,ISO)

telomere maintenance (IEA,ISO)

UV-damage excision repair (IEA,ISO)

Cellular Component

chromosome (IEA)

cytosol (IEA,ISO)

Ino80 complex (IBA,IEA,ISO)

microtubule (IEA)

nuclear body (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

spindle (IEA)

Molecular Function

actin binding (IEA)

alpha-tubulin binding (IEA,ISO)

ATP binding (IEA)

ATP hydrolysis activity (IBA)

ATP-dependent activity, acting on DNA (IEA,ISO)

ATP-dependent chromatin remodeler activity (IEA)

DNA binding (IEA,ISO)

histone binding (IBA)

hydrolase activity (IEA)

nucleotide binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

INO80 family mediated chromatin remodeling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Comprehensive gene review and curation	RGD comprehensive gene curation
6.	The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics.	Watanabe S and Peterson CL, Cold Spring Harb Symp Quant Biol. 2010;75:35-42. doi: 10.1101/sqb.2010.75.063. Epub 2011 Apr 18.

Additional References at PubMed

PMID:16298340	PMID:18026119	PMID:20237820	PMID:20687897	PMID:20855601	PMID:21303910	PMID:37580530

Genomics

Comparative Map Data

Ino80
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	126,822,280 - 126,919,532 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	126,822,280 - 126,919,532 (-)	Ensembl				GRCr8
mRatBN7.2	3	106,368,455 - 106,465,716 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	106,368,455 - 106,467,911 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	110,041,693 - 110,137,309 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	118,637,234 - 118,732,853 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	116,297,616 - 116,393,247 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	111,186,371 - 111,266,542 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	111,187,711 - 111,266,542 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	117,737,293 - 117,817,221 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	105,898,279 - 105,979,698 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	105,280,824 - 105,360,318 (-)	NCBI		Celera
RGSC_v3.1	3	105,796,041 - 105,876,126 (-)	NCBI
Cytogenetic Map	3	q35	NCBI

INO80
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	40,978,880 - 41,116,280 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	40,978,880 - 41,116,568 (-)	Ensembl			hg38	GRCh38
GRCh37	15	41,271,078 - 41,408,478 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	39,058,370 - 39,195,632 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	15	18,038,958 - 18,176,235 (-)	NCBI		Celera
Cytogenetic Map	15	q15.1	NCBI
HuRef	15	18,119,567 - 18,256,778 (-)	NCBI		HuRef
CHM1_1	15	41,389,027 - 41,526,426 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	38,784,821 - 38,922,361 (-)	NCBI		T2T-CHM13v2.0

Ino80
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	119,203,523 - 119,308,168 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	119,203,523 - 119,308,168 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	119,373,042 - 119,478,685 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	119,373,042 - 119,477,687 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	119,198,778 - 119,303,365 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	119,064,483 - 119,169,070 (-)	NCBI		MGSCv36	mm8
Celera	2	120,524,647 - 120,631,142 (-)	NCBI		Celera
Cytogenetic Map	2	E5	NCBI
cM Map	2	59.97	NCBI

Ino80
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955416	7,870,258 - 7,961,812 (-)	Ensembl
ChiLan1.0	NW_004955416	7,870,521 - 8,020,862 (-)	NCBI	ChiLan1.0	ChiLan1.0

INO80
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	30,221,130 - 30,364,477 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	34,372,456 - 34,515,840 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	19,920,980 - 20,058,117 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	38,170,982 - 38,307,309 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	38,170,982 - 38,307,311 (-)	Ensembl			panPan2	panpan1.1

INO80
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	8,100,536 - 8,229,868 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	8,101,934 - 8,202,025 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	8,159,373 - 8,288,441 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	8,233,579 - 8,363,164 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	8,233,603 - 8,362,950 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	8,156,943 - 8,286,498 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	8,263,220 - 8,392,291 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	8,394,591 - 8,523,519 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ino80
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	86,527,337 - 86,642,190 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	4,375,395 - 4,478,899 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	4,374,802 - 4,478,894 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

INO80
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	130,201,718 - 130,342,838 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	130,201,705 - 130,341,627 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	145,362,763 - 145,504,972 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

INO80
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	41,878,648 - 42,017,526 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	41,898,723 - 42,017,736 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	98,968,251 - 99,108,683 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ino80
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624804	8,223,550 - 8,321,756 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624804	8,223,626 - 8,353,339 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ino80
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	97,555,672 - 97,652,357 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ino80
498 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	169
Count of miRNA genes:	103
Interacting mature miRNAs:	115
Transcripts:	ENSRNOT00000031672, ENSRNOT00000068584
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	122654702	136118980	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	116582412	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	104545086	149545086	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	112250810	157250810	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	101255536	134750886	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	117537367	162537367	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	125814931	139636791	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	116188400	161188400	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001261404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC132987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000031672 ⟹ ENSRNOP00000035575

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	126,822,280 - 126,919,532 (-)	Ensembl
mRatBN7.2 Ensembl	3	106,368,455 - 106,467,911 (-)	Ensembl
Rnor_6.0 Ensembl	3	111,187,711 - 111,266,542 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098694 ⟹ ENSRNOP00000089433

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	106,368,455 - 106,467,911 (-)	Ensembl

RefSeq Acc Id:

NM_001261404 ⟹ NP_001248333

RefSeq Status:

INFERRED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	126,822,280 - 126,919,532 (-)	NCBI
mRatBN7.2	3	106,368,455 - 106,465,716 (-)	NCBI
Rnor_6.0	3	111,186,371 - 111,266,542 (-)	NCBI
Rnor_5.0	3	117,737,293 - 117,817,221 (-)	NCBI
Celera	3	105,280,824 - 105,360,318 (-)	NCBI

Sequence:

show sequence

ATGGCCTCGGAGTTGGGTGCCGGGGACGATGGCAGCTGCACTGAGCTGGCAAAGCCCCTTTATC
TTCAGTACCTGGAGAGGGCCTTGCGGTTGGACCATTTTCTGCGACAGACATCAGCCATCTTCAA
CAGGAATATTTCTAGTGATGACAGTGAAGATGGACTGGATGACAATAATCCCTTATTGCCCGAG
TCTGGGGATCCCTTAATACAAGTAAAAGAAGAACCACCAAATTCATTGCTTGGCGAAACTTCTG
GAGCAAGCAGTTCTGGGTTGTTGAACCCATATTCACTGAACGGAGTTCTGCAGTCAGAATCAAA
ATCTGACAAGGGGAATTTATATAACTTCTCTAAGTTGAAGAAAAGCAGAAAGTGGCTAAAGAGC
ATTCTTTTAAGTGATGAGTCCAGTGAGGCAGATTCTCAGAGTGAAGACAATGATGATGAAGAAG
AAGAACTCAGTCTCAGCAGAGAAGAACTTCACAACATGCTTCGATTACACAAATATAAGAAACT
TCACCAAAATAAATATAGTAAAGATAAGGAGTTGCAGCAGTACCAGTACTACAGTGCAGGCCTG
CTCTCCACATGCGACCCTTTCTATGAGCAACAGCGCCACTTGCTTGGACCCAAAAAAAAGAAAT
TCAAGGAAGACAAGAAGCTTAAAGCCAAGTTGAAAAAAGTGAAGAAAAAAAGACGGCGCGATGA
GGAGTTTTCCTCTGAAGAATCTCCACGGCACCACCATCACCAGACCAAAGTCTTTGCTAAGTTT
TCTCATGATGCACCTCCCCCTGGAACCAAGAAGAAACACTTATCCATTGAACAGCTCAATGCTC
GCCGCAGGAAAGTGTGGCTGAGCATTGTGAAAAAGGAACTACCAAAGGCTAACAAGCAGAAGTC
TTCAGCTCGAAACTTATTTCTTACAAATAGCCGAAAGCTTGCCCATCAGTGCATGAAGGAGGTG
CGCCGCGCTGCTTTGCAAGCACAGAAAAATTGTAAGGAGACCCTGCCTCGTGCCCGGCGCTTAA
CCAAGGAGATGCTTCTGTACTGGAAGAAGTATGAGAAGGTGGAGAAGGAGCACCGCAAACGAGC
GGAGAAGGAAGCTTTGGAGCAGCGGAAGTTGGATGAGGAAATGCGGGAGGCCAAGAGGCAACAG
CGAAAACTCAACTTCTTAATCACTCAGACAGAGTTGTATGCTCATTTCATGAGTCGGAAACGTG
ATATGGGCCATGATGGAATCCAGGAAGAAATTTTAAGGAAACTAGAAGATAGTTCTACCCAGAG
ACAAATCGACATTGGTGGAGGAGTGGTGGTTAACATCACCCAGGAAGACTATGATAGTAACCAT
TTTAAAGCCCAGGCCCTGAAGAATGCTGAAAATGCTTACCATATTCACCAAGCTCGAACAAGGT
CATTTGATGAAGATGCAAAGGAAAGTCGGGCAGCTGCTCTTAGGGCAGCAGACAAGTCTGGCTC
TGGGTTTGGAGAGAGTTATAGCTTAGCGAATCCATCTATCCGGGCCGGTGAGGATATTCCACAA
CCCACTATTTTCAATGGCAAGTTGAAAGGTTACCAGCTGAAAGGCATGAACTGGTTAGCAAATC
TATATGAACAGGGTATTAATGGAATTCTTGCTGATGAAATGGGTCTTGGTAAAACTGTACAGAG
CATTGCCCTCCTGGCCCATCTGGCTGAGAGAGAAAACATTTGGGGACCTTTCTTAATAATCTCA
CCTGCTTCTACACTTAATAATTGGCACCAGGAGTTTACAAGATTTGTTCCTAAATTTAAGGTGC
TACCATATTGGGGAAATCCTCATGATAGAAAAGTTATCCGGAGATTCTGGAGTCAGAAGACCTT
ATATACTCAGGATGCTCCCTTCCATGTGGTCATCACTAGCTACCAGCTGGTGGTCCAGGATGTC
AAGTATTTCCAGCGGGTCAAGTGGCAGTACATGGTACTGGATGAAGCTCAGGCACTGAAGAGTA
GCTCCAGTGTTCGTTGGAAGATTCTCTTACAATTCCAGTGTCGGAATCGGCTTTTGTTGACTGG
AACCCCCATTCAGAATACCATGGCAGAGCTCTGGGCTCTGCTACATTTCATTATGCCAACACTA
TTTGATTCCCATGAAGAATTTAATGAATGGTTTTCCAAAGACATTGAAAGTCATGCTGAAAACA
AATCTGCTATTGATGAGAATCAACTCTCTCGATTGCACATGATCTTGAAGCCATTTATGCTGAG
AAGAATCAAAAAAGATGTAGAAAATGAATTGTCTGACAAGATTGAGATTCTAATGTACTGCCAA
TTGACCAGCCGACAAAAGCTCTTATATCAGGCACTAAAGAATAAAATTTCCATTGAGGACTTAT
TGCAGTCTTCGATGGGCTCTACACAACAAGCACAGAACACCACCAGCAGCCTCATGAATTTAGT
CATGCAATTCAGGAAGGTGTGTAATCACCCAGAGTTATTCGAACGGCAAGAAACGTGGTCTCCA
TTTCATATTTCCCTAAAGCCATATGAAATTTCAAAGTTTATCTATCGTCATGGACAGATCAGGG
TCTTCAACCATTCACGAGATAGGTGGTTGAAGGTTCTTCTTTCTCCATTTGCACCAGACTATAT
CCAGCAGTCTCTCTTCCATAGAAAAGGTATTAATGAAGGAAGCTGTTTTTCTTTCCTTCGATTT
ATTGATGTCTCGCCAGCAGAAATGGCAAACCTCATGCTTCAGGGACTTTTGGCCAGGTGGTTAG
CTCTTTTCCTATCTCTGAAAGCCTCCTACAGGCTCCATCAGCTGCGCTCTTGGGGAGAGCCAGA
TGGGGAGAGTCATCAGAGATATCTGAGAAATAAGGATTTTCTTCTTGGAGTTGATTTTCCACTT
TCCTTCCCCAATCTTTGCAGCTGCCCTTTGTTAAAGTCTCTTGTTTTCAGCAGCCACTGTAAAG
CAGTGAGTGGCTACTCAGACCAGGTTGTCCATCAATGGAGATCAGCTACCTCCTCACTTCGTTG
CTGCCTCCTCACTGAGCTGCCATCCTTTTTGTGTGTGGCCAGTCCACGAGTCACCGCAGTGCCG
TTGGATTCTTACTGTAATGACAGAAGTGCAGAGTATGAGAGAGGAGTTCTGAAGGAAGGAGGGA
GTCTGGCTGCCAAGCAGTGTTTGTTGAATGGGGCTCCTGAGCTGGCTACGGATTGGCTGAATCG
CAGATCCCAGTTCTTCCCAGAGCCAGCTGGAGGGCTGTTGAGCATTAGGCCCCAGAACGGCTGG
TCTTTCATCAGAATCCCAGGCAAGGAGAGCCTCATCACTGACAGTGGAAAGCTGTATGCCCTTG
ATATCCTGTTGACTCGGCTCAAGTCTCAAGGACATAGGGTCCTTATCTACTCTCAGATGACCAG
AATGATAGACCTGCTGGAGGAATATATGGTATACAGGAAACATACCTACATGAGGCTGGATGGC
TCATCTAAGATCTCAGAGAGACGGGACATGGTTGCTGACTTTCAGACCAGGAACGACATCTTTG
TGTTTCTGTTAAGCACGAGGGCTGGAGGACTGGGCATCAATCTCACAGCTGCTGACACAGTGAT
TTTCTACGATAGTGACTGGAACCCCACTGTAGACCAGCAGGCCATGGATAGAGCCCACCGCTTG
GGGCAGACAAAGCAGGTCACTGTGTACCGGCTTATCTGTAAAGGCACAATTGAGGAGCGTATTC
TGCAGAGAGCCAAGGAAAAGAGTGAGATTCAGCGCATGGTGATTTCTGGTGGGAACTTCAAACC
AGATACCTTGAAACCCAAAGAGGTGGTTAGCCTCCTTCTAGATGATGAAGAACTGGAGAAGAAA
CTGAGACTGCGGCAGGAAGAGAAACGGCAGCAGGAGGAAAGTAACCGAGTGAAAGAACGCAAAC
GCAAGCGGGAGAAGTACGCAGAAAAGAAAAAAAAGGAAGATGAGTTGGATGGGAAGAGGAGAAA
AGAGGGTGTGAACCTTGTGATCCCGTTTGTTCCTGCTGCTGACAATTCCAACCTCTCTGCTGAT
GGAGACGATTCCTTCATAAGTGTAGACTCAGCCATGCCCAGCCCATTCAGTGAGATCTCAATCA
GCAGCGAACTTCACACTGGCTCCATTCCCCCTGATGAGAGCAGCAGTGACATGTTAGTCATCGT
GGATGACCCAGCCTCCTCAGCGCCTCAGTCTAGAGCCACCAACTCTCCTGCTTCCATAACAGGC
TCTGTGTCAGACACTGTGAATGGAATTTCCATTCAGGAAGTGCCAGCTGCAGGACGTGGTCACT
CAGCTCGAAGCCGAGGCCGCCCCAAGGGTTCAGGAAGCACAGCCAAAGGAGCGGGGAAAGGCCG
AAGCCGCAAGTCCACTGCAGGCAGCGCTGCTGCGATGGCAGGAGCCAAAGCAGGGGCTGCAGCG
GCTTCTGCAGCTGCTTATGCCGCCTACGGGTACAATGTGTCTAAAGGAATCTCTGCAAGCAGTC
CTCTTCAGACATCCATTGTCCGACCTGCTGGCCTTGCAGACTTTGGACCTTCAAGCGCCTCTTC
TCCCTTAAGTTCCCCTCTGAACAAAGGAAATAATATTCCTGGGACTCCTAAAAGCCTCCACATG
ACCAGCAGCCTAGCCTCAGACCCCTTGATCCGGAAACAGGGCAAAGGCACCAATCCCTCTGGAG
GACGGTAACCATGGTAATTATCTCTGCCCTCTAGCTTCCTTCAACCAAACCAGGGACTGCAGTC
CTGGGCCATAGGTGGTCTTTGGATGGCTTGCCCAGTGTGGCATCTTGCATCCTATTTGGAGAGT
GGAAAGGACCAGTTGTAGCAGGAGAGGACAGGCAGGTGTTTGGTGTGAGCACTTTTATCACCTG
TTTCCAAAGGAATATCCTGGGTTCGGCCCCACAGCATCCTAGATGTACTCTGCAGCCGTACTCT
TAACCTCTTTCTGGGGAAGGGCCTGACACAACCCCTTTTATAGATGCTCAGGCACACTGTCTCC
ATCCCCATCCCTTCAGCTCTGACTATGTCCCTCATGAAGGCTCCATGGGTGCTGTGAAGAGCCT
TCCCCAGTGGAGACTTCTCTAAAGGTTATGGTTTCCTTCAGGGCTAGGAAAGGAGGAATTGATT
CCCTGGTACACATAGTCTGGGAGCACGCCTGGGTCTCTCAGCCCTATTTGCCACAGTGTCATCA
CTGTGTCATCACTGAAGAACACAAGGAATGCCAGAGAAGATGGTAGCTGTGAGTGAGGGTGACA
GAGGCTGGAGCAAGCAGAGGCACAGGCATTTCCCAGCATTTCCTCCACTGTCCAGCACGGTTCA
CACCAGGGGAGCTTTAGGTCCCACCAGCAACAGTAGCAGCAGCTCCCACTCAAGGGACTTCCCA
GAAGCCAGTAAAGAGACCAGGAACCACCTCAATCAGCAGGACATCCTCACCACCCTCTTACAGA
TGCCCCTTTGCCCATCCTGAATGCACAGCCTCCCTGGCTTTGCCCTTCAGCCCCTGCTTGGCTG
TATGCACTGTCTGTATTGCACTGAGAAAGAAGGGACAGCAGGAGTGAAATGGGGAGGGAGCTGG
CTTGGCACCACCCCTCCCTGCCCTGCCCACTCGCCTAAGCTTGCTGCCCTCTGAGAGGGGAGAG
GGGCGGCTGGGAGGGCTTTCCACCTGACGTCCCTGGTGGAACAGGTGCTTCTGGGCGGGCCAGC
CTCTAATTTGCACACCTGAAATCGCGGAATTGAGTTTAGATAGATTGATTTTTTAAACACTTTT
TTTTTGGGGGGGGGGAGTAGGTGTAGGGGAATCATTTAATTTAAATCATAAAAATTCCCCTACC
CAAACCCTGACTCCTGTGTACAGATGCTCTTTAGAGGGAATCAGAAAATGCCAAGCCTTTTTTC
TCTTTGAATGTGCTGTCTATTTTTATAACTGAACTTGTACATATGTATAAAGAGAGACACATCT
TTCTTTTACTAACTGGATAAAAAATCTTAAATAAAATGGAGTGAGATAATTTTATGTAAATTAA
A

hide sequence

RefSeq Acc Id:

XM_039104549 ⟹ XP_038960477

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	126,822,285 - 126,890,473 (-)	NCBI
mRatBN7.2	3	106,369,792 - 106,436,654 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001248333	(Get FASTA)	NCBI Sequence Viewer
	XP_038960477	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035575
	ENSRNOP00000035575.7

RefSeq Acc Id:

NP_001248333 ⟸ NM_001261404

- UniProtKB:

D4A6Q6 (UniProtKB/TrEMBL), A0A8I6ABX1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASELGAGDDGSCTELAKPLYLQYLERALRLDHFLRQTSAIFNRNISSDDSEDGLDDNNPLLPE
SGDPLIQVKEEPPNSLLGETSGASSSGLLNPYSLNGVLQSESKSDKGNLYNFSKLKKSRKWLKS
ILLSDESSEADSQSEDNDDEEEELSLSREELHNMLRLHKYKKLHQNKYSKDKELQQYQYYSAGL
LSTCDPFYEQQRHLLGPKKKKFKEDKKLKAKLKKVKKKRRRDEEFSSEESPRHHHHQTKVFAKF
SHDAPPPGTKKKHLSIEQLNARRRKVWLSIVKKELPKANKQKSSARNLFLTNSRKLAHQCMKEV
RRAALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQ
RKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRKLEDSSTQRQIDIGGGVVVNITQEDYDSNH
FKAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAADKSGSGFGESYSLANPSIRAGEDIPQ
PTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIIS
PASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDV
KYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTL
FDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQ
LTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSP
FHISLKPYEISKFIYRHGQIRVFNHSRDRWLKVLLSPFAPDYIQQSLFHRKGINEGSCFSFLRF
IDVSPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWGEPDGESHQRYLRNKDFLLGVDFPL
SFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQWRSATSSLRCCLLTELPSFLCVASPRVTAVP
LDSYCNDRSAEYERGVLKEGGSLAAKQCLLNGAPELATDWLNRRSQFFPEPAGGLLSIRPQNGW
SFIRIPGKESLITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDG
SSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL
GQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEELEKK
LRLRQEEKRQQEESNRVKERKRKREKYAEKKKKEDELDGKRRKEGVNLVIPFVPAADNSNLSAD
GDDSFISVDSAMPSPFSEISISSELHTGSIPPDESSSDMLVIVDDPASSAPQSRATNSPASITG
SVSDTVNGISIQEVPAAGRGHSARSRGRPKGSGSTAKGAGKGRSRKSTAGSAAAMAGAKAGAAA
ASAAAYAAYGYNVSKGISASSPLQTSIVRPAGLADFGPSSASSPLSSPLNKGNNIPGTPKSLHM
TSSLASDPLIRKQGKGTNPSGGR

hide sequence

Ensembl Acc Id:

ENSRNOP00000035575 ⟸ ENSRNOT00000031672

RefSeq Acc Id:	XP_038960477 ⟸ XM_039104549
- Peptide Label:	isoform X1
- UniProtKB:	A6HPF3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000089433 ⟸ ENSRNOT00000098694

Protein Domains

DBINO Helicase ATP-binding Helicase C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A6Q6-F1-model_v2	AlphaFold	D4A6Q6	1-1559	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310969	AgrOrtholog
BioCyc Gene	G2FUF-48204	BioCyc
Ensembl Genes	ENSRNOG00000014483	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000031672	ENTREZGENE
	ENSRNOT00000031672.8	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.10810	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	DEAD-like_N	UniProtKB/TrEMBL
	DNA_binding_INO80	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	Ino80	UniProtKB/TrEMBL
	INO80/SWR1_helicase	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SNF2-like_sf	UniProtKB/TrEMBL
	SNF2/RAD54-like_C	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
KEGG Report	rno:296084	UniProtKB/TrEMBL
NCBI Gene	296084	ENTREZGENE
PANTHER	HELICASE SRCAP-RELATED	UniProtKB/TrEMBL
	PTHR45685:SF2	UniProtKB/TrEMBL
Pfam	DBINO	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	SNF2_N	UniProtKB/TrEMBL
PhenoGen	Ino80	PhenoGen
PROSITE	DBINO	UniProtKB/TrEMBL
	HELICASE_ATP_BIND_1	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014483	RatGTEx
SMART	DEXDc	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8I6ABX1	ENTREZGENE
	A6HPF3	ENTREZGENE, UniProtKB/TrEMBL
	D4A6Q6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-04-29	Ino80	INO80 complex ATPase subunit	Ino80	INO80 complex subunit	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-09-16	Ino80	INO80 complex subunit	Ino80	INO80 homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-16	Ino80	INO80 homolog (S. cerevisiae)	Inoc1	INO80 complex homolog 1 (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-27	Inoc1	INO80 complex homolog 1 (S. cerevisiae)	RGD1310969_predicted	similar to KIAA1259 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1310969_predicted	similar to KIAA1259 protein (predicted)	LOC296084_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC296084_predicted	similar to KIAA1259 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - ClinVar

RGD Manual Annotations