Tlk2 (tousled-like kinase 2) - Rat Genome Database

Name: Tlk2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Tlk2 (tousled-like kinase 2) Rattus norvegicus

Analyze

Symbol:

Tlk2

Name:

tousled-like kinase 2

RGD ID:

1310907

Description:

Predicted to enable ATP binding activity; identical protein binding activity; and protein serine/threonine kinase activity. Predicted to be involved in several processes, including cellular response to gamma radiation; negative regulation of proteasomal ubiquitin-dependent protein catabolic process; and regulation of chromatin organization. Predicted to be located in intermediate filament. Predicted to be active in nucleus and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder. Orthologous to human TLK2 (tousled like kinase 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC303592; serine/threonine-protein kinase tousled-like 2; tousled-like kinase 2 (Arabidopsis)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TLK2 (tousled like kinase 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Tlk2 (tousled-like kinase 2 (Arabidopsis))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tlk2 (tousled like kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TLK2 (tousled like kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TLK2 (tousled like kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tlk2 (tousled like kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TLK2 (tousled like kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TLK2 (tousled like kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tlk2 (tousled like kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TLK1 (tousled like kinase 1)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	TLK2 (tousled like kinase 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tlk2 (tousled-like kinase 2 (Arabidopsis))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tlk2 (tousled-like kinase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Tlk	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tlk-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tlk2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	90,648,623 - 90,748,427 (+)	NCBI		GRCr8
mRatBN7.2	10	90,154,449 - 90,248,562 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	90,156,813 - 90,248,561 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	95,206,187 - 95,297,605 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	94,669,374 - 94,760,787 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	90,087,610 - 90,178,997 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	93,410,181 - 93,507,277 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	93,415,399 - 93,507,277 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	93,171,277 - 93,265,759 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	94,583,881 - 94,675,624 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	94,598,540 - 94,690,015 (+)	NCBI
Celera	10	88,840,363 - 88,931,499 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

Autosomal Dominant Intellectual Developmental Disorder 57 (ISO)

Developmental Disease (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

antimycin A (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

atrazine (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

casticin (ISO)

chlorpyrifos (ISO)

clofibrate (ISO)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

coumarin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fenpyroximate (ISO)

fenvalerate (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

leflunomide (ISO)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

picoxystrobin (ISO)

pirinixic acid (ISO)

propiconazole (ISO)

pyrimidifen (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

Soman (EXP)

tebufenpyrad (ISO)

tetrachloromethane (ISO)

topotecan (EXP)

trichostatin A (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to gamma radiation (ISO)

chromosome segregation (IBA,ISO)

DNA damage response (ISO)

intracellular signal transduction (IBA,ISO)

negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ISO)

nucleus localization (ISO)

regulation of chromatin organization (ISO)

Cellular Component

intermediate filament (ISO)

nucleus (IBA,ISO)

perinuclear region of cytoplasm (IBA,ISO)

Molecular Function

ATP binding (ISO)

identical protein binding (ISO)

protein binding (ISO)

protein serine/threonine kinase activity (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9427565	PMID:10092119	PMID:10455159	PMID:10523312	PMID:12477932	PMID:12660173	PMID:20016786	PMID:20705056

Genomics

Comparative Map Data

Tlk2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	90,648,623 - 90,748,427 (+)	NCBI		GRCr8
mRatBN7.2	10	90,154,449 - 90,248,562 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	90,156,813 - 90,248,561 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	95,206,187 - 95,297,605 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	94,669,374 - 94,760,787 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	90,087,610 - 90,178,997 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	93,410,181 - 93,507,277 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	93,415,399 - 93,507,277 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	93,171,277 - 93,265,759 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	94,583,881 - 94,675,624 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	94,598,540 - 94,690,015 (+)	NCBI
Celera	10	88,840,363 - 88,931,499 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

TLK2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	62,470,914 - 62,615,481 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	62,458,658 - 62,615,481 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	60,555,172 - 60,692,842 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	57,910,136 - 58,044,759 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	57,910,135 - 58,044,757	NCBI
Celera	17	54,943,227 - 55,080,744 (+)	NCBI		Celera
Cytogenetic Map	17	q23.2	NCBI
HuRef	17	55,922,871 - 56,059,913 (+)	NCBI		HuRef
CHM1_1	17	60,620,742 - 60,757,150 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	63,340,853 - 63,485,425 (+)	NCBI		T2T-CHM13v2.0

Tlk2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	105,066,869 - 105,174,785 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	105,069,633 - 105,174,785 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	105,167,895 - 105,283,959 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	105,178,807 - 105,283,959 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	105,042,844 - 105,145,270 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	104,990,017 - 105,098,266 (+)	NCBI		MGSCv36	mm8
Celera	11	116,917,176 - 117,016,528 (+)	NCBI		Celera
Cytogenetic Map	11	E1	NCBI
cM Map	11	68.61	NCBI

Tlk2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955478	9,100,863 - 9,231,281 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955478	9,100,863 - 9,229,448 (-)	NCBI	ChiLan1.0	ChiLan1.0

TLK2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	78,625,228 - 78,770,238 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	83,443,071 - 83,589,819 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	56,542,670 - 56,678,294 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	61,685,664 - 61,830,394 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	61,689,998 - 61,830,394 (+)	Ensembl	panpan1.1		panPan2

TLK2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	10,686,424 - 10,804,885 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	10,687,293 - 10,803,963 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	11,714,062 - 11,832,646 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	12,349,863 - 12,468,222 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	12,352,936 - 12,468,395 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	11,296,263 - 11,416,607 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	16,116,584 - 16,234,838 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	16,120,734 - 16,239,324 (-)	NCBI		UU_Cfam_GSD_1.0

Tlk2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	15,772,329 - 15,890,520 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936541	3,302,872 - 3,423,058 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936541	3,303,563 - 3,422,093 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TLK2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	16,129,256 - 16,256,359 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	16,129,249 - 16,256,642 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	16,019,893 - 16,122,944 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TLK2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	58,662,284 - 58,800,838 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	58,660,126 - 58,797,786 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	29,296,162 - 29,437,603 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tlk2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624849	24,867 - 151,002 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624849	24,536 - 150,142 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tlk2
455 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	403
Count of miRNA genes:	227
Interacting mature miRNAs:	269
Transcripts:	ENSRNOT00000066484
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47369470	92369470	Rat
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	50574707	95574707	Rat
70364	Bp72	Blood pressure QTL 72			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	51121100	96121100	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	51770177	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
1359017	Hrtrt21	Heart rate QTL 21	2.4		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	10	51772940	96772940	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	51774612	95600334	Rat
631535	Cm51	Cardiac mass QTL 51	3		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	51786282	91669536	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	53797494	98952626	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	54809292	99809292	Rat
2312662	Slep8	Serum leptin concentration QTL 8		0.05	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	10	57134272	102134272	Rat
2312668	Scl65	Serum cholesterol level QTL 65		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	57134272	102134272	Rat
2312672	Insul15	Insulin level QTL 15		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	10	57134272	102134272	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	57576521	102576521	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
2306970	Anxrr22	Anxiety related response QTL 22	5.95		fear/anxiety-related behavior trait (VT:1000241)	number of periods of voluntary immobility (CMO:0001045)	10	61345276	98211570	Rat
6893336	Cm75	Cardiac mass QTL 75	0.1	0.87	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	61345276	99703528	Rat
1558643	Cm44	Cardiac mass QTL 44	4.8	0.0000368	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	61345276	99703528	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
1357344	Bp249	Blood pressure QTL 249		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	66743655	98003205	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70199100	107211142	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72224939	107211142	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	72224939	107211142	Rat
2306793	Ean5	Experimental allergic neuritis QTL 5	4.7		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	72552416	93995749	Rat
1358188	Ept9	Estrogen-induced pituitary tumorigenesis QTL 9	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73453136	96120911	Rat
2292617	Ept18	Estrogen-induced pituitary tumorigenesis QTL 18	3.9		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	10	73453136	96120911	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	74372084	94965338	Rat
10450495	Bp383	Blood pressure QTL 383		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	94965338	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	107211142	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76452683	107211142	Rat
4889492	Pancm2	Pancreatic morphology QTL 2	3.2		pancreatic beta cell morphology trait (VT:0005217)	ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)	10	76748906	107211142	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	78775516	98279596	Rat
631555	Bp134	Blood pressure QTL 134		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	80515287	91230079	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	80515287	101325465	Rat
2303589	Bw87	Body weight QTL 87	2		body mass (VT:0001259)	body weight (CMO:0000012)	10	81285008	107211142	Rat
4889948	Bss91	Bone structure and strength QTL 91	4		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	10	82564856	92369470	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	82685200	107211142	Rat
12880055	Am11	Aortic mass QTL 11		0.004	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	84007272	95933025	Rat
2301398	Kidm38	Kidney mass QTL 38		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	84007272	95933025	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	84022321	93995963	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	85565469	103884409	Rat
631538	Oia5	Oil induced arthritis QTL 5			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87055121	107211142	Rat
2313856	Bp342	Blood pressure QTL 342	4.4	0.0001	life span trait (VT:0005372)	age at time of death (CMO:0001193)	10	87307617	96121100	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87307617	107211142	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	88539139	107211142	Rat
1558652	Bw57	Body weight QTL 57	4.2	0.0008	body mass (VT:0001259)	body weight (CMO:0000012)	10	89327017	90930437	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	35	51	35	19	35	8	10	74	35	41	11	8
Low		8	6	6		6		1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597333	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597336	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269187	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF381288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM082999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM091827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM098672	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FN804032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000066484 ⟹ ENSRNOP00000062555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	90,156,813 - 90,248,561 (+)	Ensembl
Rnor_6.0 Ensembl	10	93,415,399 - 93,507,277 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000096733 ⟹ ENSRNOP00000088191

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	90,156,813 - 90,248,561 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106328 ⟹ ENSRNOP00000084710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	90,156,813 - 90,248,561 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118444 ⟹ ENSRNOP00000091443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	90,156,813 - 90,248,561 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000120296 ⟹ ENSRNOP00000096955

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	90,156,813 - 90,248,561 (+)	Ensembl

RefSeq Acc Id:

NM_001191652 ⟹ NP_001178581

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,656,689 - 90,748,427 (+)	NCBI
mRatBN7.2	10	90,156,813 - 90,248,562 (+)	NCBI
Rnor_6.0	10	93,415,399 - 93,507,277 (+)	NCBI
Rnor_5.0	10	93,171,277 - 93,265,759 (+)	NCBI
Celera	10	88,840,363 - 88,931,499 (+)	NCBI

Sequence:

show sequence

AGCCGTGCAAATCTCGCGAGGAAACACGAGGTTTCACTAGTGTGTTTACACCGATCACTACTAA
TCCGGACCGAACCGATCCGGATTAAGGGGCCGGAGGCGGGTCCTGGGCACTAGCGGTTCCGACC
CCCCCCACCCCGCCCTCTGCGCCGCACCCGAGTGGCCCCCCCAACCGAGCCGGCCCCCACTTCT
CGGCCCGACCCGGACCCTTCTGCGCCTCCCTTGGCCTTTGTCCGGCGCCAGGAGGCCGGCCCCG
CGCCCCCCGGCGGCCGCCCGGGCCCGGGCCCGCGTCAGGCGCCTGGCTCTGTACGCGAGCTCGG
GGATCTGCGGCCTCCGTGGCCCCCCTCCCCCGCCCGCCCTCTCGTGGAGCCCGGCGCCGGCGGC
GGCTGCCCGGGCGGGGGGTTGCGGCGCTCAGGAGAGGCCCCGGCTCCGCCCCGGGCCTGCCCAG
GGGGAGAGCAGAACGATCGGCAACCGGGTCGGGTCGGGGCCCCTCCCGAGAGGAGCGTGGAGCG
GCAGCGGCGGCAGAAATGATGGAAGAACTGCACAGCCTGGACCCACGGAGGCAGGAGTTACTGG
AGGCCAGGTTCACTGGGGTTGGCGTAAGTAAGGGGCCACTCAACAGTGAGTCTTCCAACCAGAG
TTTGTGCAGTGTGGGGTCCTTGAGTGATAAAGAAGTAGAGACTCCTGAGAAAAAGCAGAATGAC
CAGCGAAATCGGAAAAGAAAAGCTGAACCATATGAAACTAGCCAAGGGAAAGGCACTCCTAGGG
GACATAAAATTAGTGATTACTTTGAGTTTGCTGGGGGAAGCGGGCCAGGAACCAGCCCTGGCAG
AAGTGTTCCACCAGTTGCACGATCCTCACCGCAACATTCCTTATCCAATCCCTTACCGCGTCGA
GTAGAACAGCCTCTCTATGGTTTAGATGGCAGTACTGCAAAGGAGGCCTCAGAAGAGCAGTCTG
CCCTGCCAACCCTCATGTCAGTGATGTTAGCAAAACCTCGACTTGACACAGAGCAGTTAGCGCC
AAGGGGAGCTGGCCTCTGCTTCACTTTCGTCTCTGCTCAACAAAACAGCCCTTCGTCCACGGGG
TCTGGCAATACAGAACATTCTTGCAGCTCCCAGAAACAGATCTCCATCCAGCACAGGCAGACCC
AGTCTGACCTCACAATAGAAAAAATATCTGCACTAGAAAACAGTAAGAACTCTGACTTAGAGAA
GAAGGAAGGAAGAATAGATGATTTATTAAGAGCCAACTGTGATTTGAGACGACAGATAGATGAA
CAGCAAAAGATGCTAGAGAAATACAAGGAACGATTAAATAGATGTGTCACCATGAGCAAGAAGC
TCCTTATAGAAAAGTCAAAACAAGAGAAGATGGCATGCAGGGACAAGAGCATGCAGGACCGATT
GCGATTAGGTCACTTTACAACTGTCCGGCATGGAGCCTCTTTTACTGAACAGTGGACAGATGGT
TATGCTTTCCAAAACCTCATCAAGCAACAGGAAAGGATAAATTCACAGAGAGAAGAGATAGAAA
GGCAACGGAAAATGTTAGCAAAACGGAAACCCCCTGCCATGGGTCAGGCCCCTCCCGCAACCAA
TGAGCAGAAACAACGGAAAAGCAAGACCAATGGAGCTGAAAATGAAACGTTAACCTTAGCTGAA
TACCATGAACAAGAAGAAATCTTCAAACTTAGATTAGGTCATCTTAAGAAAGAGGAAGCAGAAA
TCCAGGCAGAACTGGAAAGGCTAGAAAGGGTTAGGAATCTACACATCAGGGAATTAAAAAGGAT
ACATAATGAAGATAATTCACAGTTTAAAGACCACCCAACACTAAATGACAGATATTTGTTGTTA
CATCTTTTGGGTAGAGGAGGTTTCAGTGAAGTTTACAAGGCGTTTGATCTAACGGAGCAAAGAT
ATGTAGCTGTGAAAATTCACCAGTTAAATAAAAACTGGAGAGATGAGAAAAAGGAGAATTACCA
CAAGCATGCGTGTAGGGAATACCGGATTCACAAAGAACTGGATCACCCCAGAATAGTGAAGCTG
TATGATTACTTTTCACTGGACACTGACTCGTTTTGTACAGTATTAGAATACTGTGAAGGAAATG
ATCTGGACTTCTACCTAAAGCAGCACAAATTAATGTCGGAGAAAGAAGCCCGATCCATTATTAT
GCAGATTGTGAATGCTTTAAAGTACTTAAATGAAATAAAACCTCCCATCATACACTATGACCTC
AAACCAGGTAATATCCTTTTAGTAAATGGTACAGCGTGTGGAGAGATAAAAATTACAGATTTTG
GTCTTTCCAAGATCATGGATGACGATAGCTACAATTCAGTGGACGGCATGGAGCTAACGTCACA
AGGTGCTGGTACTTATTGGTATTTGCCACCAGAGTGTTTTGTGGTTGGGAAAGAGCCACCAAAG
ATCTCAAATAAAGTCGATGTCTGGTCAGTGGGTGTGATCTTCTACCAGTGTCTGTATGGGAGGA
AGCCTTTTGGTCATAACCAGTCCCAGCAAGATATTCTACAAGAGAATACTATTCTTAAAGCTAC
TGAAGTACAGTTCCCGCCCAAGCCAGTAGTAACACCTGAAGCAAAGGCGTTTATCAGGCGATGT
TTGGCCTATCGAAAGGAAGACCGCATTGATGTGCAGCAGCTGGCCTGTGACCCCTACTTGTTGC
CTCACATCCGAAAGTCAGTCTCCACAAGTAGTCCTGCAGGAGCTGCCATTGCATCAACCTCGGG
GGCATCCAATAACAGTTCTTCGAATTGAGACCAACTCCCAAGGCCACTAACTGTTCAGCACACG
AAGTGGACACATGGCATTCAGCAGTGGGTTTGGAACATAGTGAATCCGAATGGATCTCATGAAA
CCTGTACCAGGTGCTTTTATTTTCTTGCTTTTTTTCCCATCCATAGAGCATGACAGCATCGATT
CTCATTGAGGAGAAGCCTTGGGCAGCTCTGGCCAGGCCTCATAGGAAAAGGCCCCTCCCGAGGT
TCCAGCGTCAACGGTCACCATGGGTGGCTGCTCTGAGTGAGGAAAAAAATTAAAAAGAAAAAAC
TGGTTCCATGTACTGTGAACTTGAAAACATGCAGACTCAGGGGGTTCCCTGACGCAGTGCTTCA
GATGAAGAATGTGGACTTGAAAATACAGACTGGGCTAGTCCAGTGTCTATATTTAAACTTGCTC
TTTTCTTTTAATAAAGTTTAGGTAACATCTCCTAAAAAGCTGGTAGCACAAGGCTTGACTGGGG
ATGGCGTTTGACTTCGGAGGACAAAGTTGCTACTGCCATTAAAGGCACTAGAGTTAGTGTGCTA
GCCCCGAGTAAGCTCAGTCTCTAAAACGTGCAGCTCCCTCGCCCCTTCTTATTTTTAAAGAATA
CATTTGGTCATAAAGTGAAACCCGTATTAGCGAGTACGTGGCAATGTTCATTCCAGTCAGATGC
AGCTTTCTCCTCCATCTGGGCTCCGCTTGTGAATGCTTCTCTCACCTCAGTAGGGAGAAACGGG
GTTCTGAGATGCGTGGGTTTTGCCATCGGACAAAGAATGAGGTTAGAAGACCGCAGTTTGGAGT
CTCTAGGTTTTCAGATATTTCTTCACAATTTGAACACTTGACGGTTGTCCCTTTTAATTTATTT
GAAGTGCTATTTTTTTAAATAAAGGTTCATCTGTCCATGCA

hide sequence

RefSeq Acc Id:

XM_006247574 ⟹ XP_006247636

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,648,623 - 90,748,427 (+)	NCBI
mRatBN7.2	10	90,156,010 - 90,248,562 (+)	NCBI
Rnor_6.0	10	93,410,181 - 93,507,277 (+)	NCBI
Rnor_5.0	10	93,171,277 - 93,265,759 (+)	NCBI

Sequence:

show sequence

TCAGCTTGGAGTCTGAACCAGAACAGCTGAGTTGACCAGTCAGCCAGAGCTCAGGTAGAACAAG
AAAGACTGAGCTTACTCAGCAGTAAGTCTCAGAGGCTGAAAACATTCTAGGCCTAGATAAGATT
GTATGGAGGTTAGAAGCTTCCAGGCCTAGGCCCAGGTTAGAGATGTAGGCAATAAGCCTTGGGG
ATAATTACTACAGGAGAATAAAAGATAGTTGAACACATAAACTATCTCACTTAACCATCCAAAT
GGCCCTGTATAGTAATACCATTTTATGAACAAAGTTGCTGAGGCTTGGAGCTTAAGAATACCCA
TCTATCCTTTAAAGGACTCAGCTGGGATCAGAATCAAAGGCTTTACACAGGACCTGTGTTCCAG
GGTACCATACTGCAACATCTTTCAGAGGTCAGAGGCAGGAGCAGTACAAACACACAGGTACCTG
GGTACCATCTGCCCACTCTTGCTTGATGCTGGTTTTATTTTTGAAAACAATCCCATTCTGTATT
TCAGGACACCCATGAACAATTATTCTTCTGCCTAAGTCTCTCAGGTGCTAGAATATTAAAGGTG
TGAGCACCATGTCTGAACTAGATAATGCTACTACCACCATGTCCAATGACAGCATCTCCCTCCC
CATCCTCCCCCCAATCAGTGTGTGTAGTGTGTGACACAGCATGTGAGTGGAGGTCAGAGGACAA
CCTGTAGTTTCTCTCCCTCAATCATATCAATCTCAGGAATCAAGTTCAGGTTATGAGGCTTGGT
GGTGGCAAGTGCCTATACCCATTAAATCATCTCTTATCCTTTTGGTTGTGAGCCTATTTCTTAC
CAACTCAGCCATCTCTTCAGCCTTGATAAACCATCTCTGTGGCCCTGGTATCACCTTTTTGATG
GAGGTAACCATTATGGAACATTCAAGAACATGTTTGCCAGAGATGGATGTGGTACTCTCTCACC
TATAATTCCAGCACATGGGAGGCAGAAGATGGAGGACTGATGCAAATTTTTGCCAGCCTCGGGT
AGAGTGAGACTTTGTCTCAAAAACAAGACAAAAACAGAAAATAAATTACTTAGGAGTCTGAAGT
ATCAGAGACAAGTGATGAGTGTTCTGGTGTCTTCCTCAAGATGCTTTTCCTAGAAGTTAATTCT
TTAACGACCAGCCACTTTGCTTTTGGCAGGTCCAAAAGCAACATTAGAAAAACCCAACTCAAAT
ACAAATCCTCAGGGACTCACATATATAATAGGTACTATAGACTCCATAATGAAGTACAAAAATT
CTGCTTAAGTTTAACACAGATTTCCCCAATTTCTTTGTCAAAGTAACCTTTACTCTTTCTTTGA
TTCATTAGTAACCTACAGAGAAATCTGTACAACACACTGTGGAGAAAACTATGCTAGGCTAAAG
TATGACCTGTGGCTTTAACATCAATTTGAAAAACTTTCCCTTCATTCCTCTTAAAACCAAAATC
TGGTTGCACCCATGTTTAAGTTTTCCATAGCTGATGGGAACTGGATTCTTACAAGTGACATAGC
ATCGCTTGCCACTCTCAGACAGGCTACTTCACGTGCCCAAACATAGTTTACATAAATTGATCCC
TGAATCCTAGGTTAAATTAATGTTACAAACATTTCTTTTGGGAAAAACATATTTTCCTGCCTTA
CTGATATTTTATTTTTGAGACAGGGTTTCTTTGTATAGTCCTGTAGATAAGACTGGCCTCAAAC
TCAAGAGATCTGCCTGTCTCTGCCACTTGGGTGCTGGGATGGATCAGAGGCACGTGCCGCCAGG
TCTGGCTAATATATTTTGCTTTATATGATGCTTAAAATAAAGTACCCAATTGTTCTAAGCAGTT
TCTATTGGAATAGCTGTTGATCCTAGAGTGATTTGACGTGAGTTTCCTTGACATGCATACATAG
TATGATTTACTTGTGTGCCCGGCCCTTTAAAAGATCACCAATGGCTAGTCAACTGACTCTTTGG
GAATGCTTAGCAGTTAGAACTGCTTGACCCTATGACCTTTAGTGTCAGTTGACTCTTGGATTTC
TGGAGACAGGGAGTAGGGTCCAAGAGTCAGAGGAGTAGGGTCCAGGTGGCAGTAGAGGCAGAAG
AGTAGGGTTGGAGAAGACAGTTGGTGCACAAGAAAAACTGAGAAGGGCTGGAGAGAAGGCAGTT
GGTGAAGAGATTGAACCGTGCAAATAAAAGGCCACTGAGCCAGGAGCTGAGCTGAGCCAGTAAA
GATTTTACCGTTAGGAGATAGAGGAAGAACCCATGAAGAACCCACACAAAATAGCGGGGGGAAA
AAGAGACATAAAGCTTCATTTATAGAAAACTAAAACTGCTGGGCAGGGTGGCACTCACCTTTAA
TCTCAGCTCAGCAGAGGCAGGGGGATCTCTTGTGAGTTTCAGGACAGCTAGGGCTACACAGAGA
AACCCTGTTTCAAACCCCTGCATCCCCCCACATCCCCCACCAAAAAAGTGAAACTAAAAATTTC
ATCCGTGTTCAAACGGTTCTTTTAAAAATGCACTCAGGAGACAGGCATCAGGGCGGATGCCTGT
AACGACAGCTCCTAGGGCCTGAGGCAAGAGGACTGAGAATTTAGACCAATCTTGGCTACATAGT
GAGACTCTCAGAAAACAGATAAAGGTGAGTCTGTGTGCGGGAATGTAGTTCAGTTGGTAGACTG
CCTGCCTAGCTTGTAATTAATCCTAGCTCTTAGAATGTAGGGCAGGAGGACCAGAAGTTTGACT
GCATCCTCAGCCACACTAGATCTAGGTTAGCCTCAGCTACATTAGACTTATCAAAACCAAAAAC
CGAAAATGGGACCTATGTTCTAGAAAGGGCACTGGGAATCCTCTAGCTCTAGCACAGGATGGCG
AAACTTGAAACGATAATTGGCCCAGACAACTTGTTTGTGGACCAGCTGGAAGAACTCAGCTTCA
ACTCTGTCCATTCCTCTTTCTCTTCTGGTCTCCTCTCCTAATTTATGACACTCCAGTGTCATTT
AAGGAGTTATTTTTAGGCTGTGCATAGTGGCTGCAAGTCCTGTAATCCCAGGACTTTAGAAGAG
GTTGAAGGACCACCTGAGGCTAGCCCATGCTGCATAGTGAGTTGCAGGCCATATTCTTTTCAGA
TTTATTTGTAATTATCTGTGTCCACATAAATGCAGTGTTCGTGGAAGCCTTATGGATGTAGATG
TCTTGGAGCTGGAGTTAACAGGTGGTTGTGGCCTGCCCCATACTGGTGCTGGGAAGCAAACCCA
GGATCTCTGCAAGAACAGTGCCAACTCTTAACCAATGAGCCATCTCTCCAGCCCCGTTTCTTTT
GGTCTTGACAATCCCAGGAAAGCCATCTTGTTTCATCTCAGCCTCTCAAGTGTTGGGAGTGTGG
GTGTTATTTTATTATTATTTTTTTTGATCCCACTGTTATTTAAGAACTGCCCTTGTTTTCCCAC
TGTGCACACTTGAGGAGGAGCCACGGTGCACTATCCTTTGGTTCTCCATCATTTTCATGGTTGA
GACTCACTGCATTCTGGGGGCTCCTCCTTGCCCCTTTTCCCTACCCTCTGCTCCTGACTTGCTC
TTCCTCTCTTCCTTTCAAAAATATCTTTCCAAGCAATCTGGAATCTGGAAGATGACTCCCGATT
TGAGTTTTTCTACAGTGATTGAGTTCTGAAGGATGGAGAACATCCAAGAAGGAATTTGTCATCC
TTTGCCCATTGGCAGGTCTCTGTCCAGTCAATATGTGGAAAAGTTAGTCAGAAATACGAACAGA
ACTCTACTTTGGAGTACTTGCCGACGCCTGGAAAAGTTCAAGCCGGCTGTTTAAAAGCCTGAAT
GTTTCTCTTGTAGTCCTTCGGTCATGTTCAGACATCTGGTCAAGGAAGAAGCATGAGAAGAAAA
CAAAAAGCCGAGCAGTAACTTTGAAGTCAGTGTCTTGGCTCACGAAACTAGGTGAAGAAAGTGC
CTTTTTCCCCCTTTGGCGCGGGGGTCAGATCCCATGCAGGAAGCCCTCCAGTCGAAGGCGCTCA
CCCTCCCAGCAGACTCTCTGTGAAGAGCAGGCCTGTTTTCCCATTCTGGCATTTACCCTCAGAG
CCCCCGAGCACTCCGGGAGGCCCGTTTTGTCACCGGAGGTTGAAATAGAACCTCCCGCTAGGTA
TTCTGAGTGTCCCCCGGGGGGGAGCGTCCTCCGCTGTGGAGGGGGCATGCTAGTGAGGGCTCGG
CTCTGATCCCAGGACACCTTTGTCCCTGGAGACGCCCAGCCAGTCAGAAATGATGGAAGAACTG
CACAGCCTGGACCCACGGAGGCAGGAGTTACTGGAGGCCAGGTTCACTGGGGTTGGCGTAAGTA
AGGGGCCACTCAACAGTGAGTCTTCCAACCAGAGTTTGTGCAGTGTGGGGTCCTTGAGTGATAA
AGAAGTAGAGACTCCTGAGAAAAAGCAGAATGACCAGCGAAATCGGAAAAGAAAAGCTGAACCA
TATGAAACTAGCCAAGGGAAAGGCACTCCTAGGGGACATAAAATTAGTGATTACTTTGAGTTTG
CTGGGGGAAGCGGGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTTGCACGATCCTCACC
GCAACATTCCTTATCCAATCCCTTACCGCGTCGAGTAGAACAGCCTCTCTATGGTTTAGATGGC
AGTACTGCAAAGGAGGCCTCAGAAGAGCAGTCTGCCCTGCCAACCCTCATGTCAGTGATGTTAG
CAAAACCTCGACTTGACACAGAGCAGTTAGCGCCAAGGGGAGCTGGCCTCTGCTTCACTTTCGT
CTCTGCTCAACAAAACAGCCCTTCGTCCACGGGGTCTGGCAATACAGAACATTCTTGCAGCTCC
CAGAAACAGATCTCCATCCAGCACAGGCAGACCCAGTCTGACCTCACAATAGAAAAAATATCTG
CACTAGAAAACAGTAAGAACTCTGACTTAGAGAAGAAGGAAGGAAGAATAGATGATTTATTAAG
AGCCAACTGTGATTTGAGACGACAGATAGATGAACAGCAAAAGATGCTAGAGAAATACAAGGAA
CGATTAAATAGATGTGTCACCATGAGCAAGAAGCTCCTTATAGAAAAGTCAAAACAAGAGAAGA
TGGCATGCAGGGACAAGAGCATGCAGGACCGATTGCGATTAGGTCACTTTACAACTGTCCGGCA
TGGAGCCTCTTTTACTGAACAGTGGACAGATGGTTATGCTTTCCAAAACCTCATCAAGCAACAG
GAAAGGATAAATTCACAGAGAGAAGAGATAGAAAGGCAACGGAAAATGTTAGCAAAACGGAAAC
CCCCTGCCATGGGTCAGGCCCCTCCCGCAACCAATGAGCAGAAACAACGGAAAAGCAAGACCAA
TGGAGCTGAAAATGAAACGTTAACCTTAGCTGAATACCATGAACAAGAAGAAATCTTCAAACTT
AGATTAGGTCATCTTAAGAAAGAGGAAGCAGAAATCCAGGCAGAACTGGAAAGGCTAGAAAGGG
TTAGGAATCTACACATCAGGGAATTAAAAAGGATACATAATGAAGATAATTCACAGTTTAAAGA
CCACCCAACACTAAATGACAGATATTTGTTGTTACATCTTTTGGGTAGAGGAGGTTTCAGTGAA
GTTTACAAGGCGTTTGATCTAACGGAGCAAAGATATGTAGCTGTGAAAATTCACCAGTTAAATA
AAAACTGGAGAGATGAGAAAAAGGAGAATTACCACAAGCATGCGTGTAGGGAATACCGGATTCA
CAAAGAACTGGATCACCCCAGAATAGTGAAGCTGTATGATTACTTTTCACTGGACACTGACTCG
TTTTGTACAGTATTAGAATACTGTGAAGGAAATGATCTGGACTTCTACCTAAAGCAGCACAAAT
TAATGTCGGAGAAAGAAGCCCGATCCATTATTATGCAGATTGTGAATGCTTTAAAGTACTTAAA
TGAAATAAAACCTCCCATCATACACTATGACCTCAAACCAGGTAATATCCTTTTAGTAAATGGT
ACAGCGTGTGGAGAGATAAAAATTACAGATTTTGGTCTTTCCAAGATCATGGATGACGATAGCT
ACAATTCAGTGGACGGCATGGAGCTAACGTCACAAGGTGCTGGTACTTATTGGTATTTGCCACC
AGAGTGTTTTGTGGTTGGGAAAGAGCCACCAAAGATCTCAAATAAAGTCGATGTCTGGTCAGTG
GGTGTGATCTTCTACCAGTGTCTGTATGGGAGGAAGCCTTTTGGTCATAACCAGTCCCAGCAAG
ATATTCTACAAGAGAATACTATTCTTAAAGCTACTGAAGTACAGTTCCCGCCCAAGCCAGTAGT
AACACCTGAAGCAAAGGCGTTTATCAGGCGATGTTTGGCCTATCGAAAGGAAGACCGCATTGAT
GTGCAGCAGCTGGCCTGTGACCCCTACTTGTTGCCTCACATCCGAAAGTCAGTCTCCACAAGTA
GTCCTGCAGGAGCTGCCATTGCATCAACCTCGGGGGCATCCAATAACAGTTCTTCGAATTGAGA
CCAACTCCCAAGGCCACTAACTGTTCAGCACACGAAGTGGACACATGGCATTCAGCAGTGGGTT
TGGAACATAGTGAATCCGAATGGATCTCATGAAACCTGTACCAGGTGCTTTTATTTTCTTGCTT
TTTTTCCCATCCATAGAGCATGACAGCATCGATTCTCATTGAGGAGAAGCCTTGGGCAGCTCTG
GCCAGGCCTCATAGGAAAAGGCCCCTCCCGAGGTTCCAGCGTCAACGGTCACCATGGGTGGCTG
CTCTGAGTGAGGAAAAAAATTAAAAAGAAAAAACTGGTTCCATGTACTGTGAACTTGAAAACAT
GCAGACTCAGGGGGTTCCCTGACGCAGTGCTTCAGATGAAGAATGTGGACTTGAAAATACAGAC
TGGGCTAGTCCAGTGTCTATATTTAAACTTGCTCTTTTCTTTTAATAAAGTTTAGGTAACATCT
CCTAAAAAGCTGGTAGCACAAGGCTTGACTGGGGATGGCGTTTGACTTCGGAGGACAAAGTTGC
TACTGCCATTAAAGGCACTAGAGTTAGTGTGCTAGCCCCGAGTAAGCTCAGTCTCTAAAACGTG
CAGCTCCCTCGCCCCTTCTTATTTTTAAAGAATACATTTGGTCATAAAGTGAAACCCGTATTAG
CGAGTACGTGGCAATGTTCATTCCAGTCAGATGCAGCTTTCTCCTCCATCTGGGCTCCGCTTGT
GAATGCTTCTCTCACCTCAGTAGGGAGAAACGGGGTTCTGAGATGCGTGGGTTTTGCCATCGGA
CAAAGAATGAGGTTAGAAGACCGCAGTTTGGAGTCTCTAGGTTTTCAGATATTTCTTCACAATT
TGAACACTTGACGGTTGTCCCTTTTAATTTATTTGAAGTGCTATTTTTTTAAATAAAGGTTCAT
CTGTCCATGCA

hide sequence

RefSeq Acc Id:

XM_006247576 ⟹ XP_006247638

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,657,619 - 90,748,427 (+)	NCBI
mRatBN7.2	10	90,157,741 - 90,248,562 (+)	NCBI
Rnor_6.0	10	93,416,226 - 93,507,277 (+)	NCBI
Rnor_5.0	10	93,171,277 - 93,265,759 (+)	NCBI

Sequence:

show sequence

CTGGAGTTAGGGAAAGTTTGGAGCCGGCAAGGGGCGTCGGGACCAGGCCCCATCGGTCCTGCTT
CCCGGTTTGGGGGCCACTGGGAGGATCCCGGTCCAAAGCCTCGCTGGAAAGAGATGGAAAATGA
TGGAAGAACTGCACAGCCTGGACCCACGGAGGCAGGAGTTACTGGAGGCCAGGTTCACTGGGGT
TGGCGTAAGTAAGGGGCCACTCAACAGTGAGTCTTCCAACCAGAGTTTGTGCAGTGTGGGGTCC
TTGAGTGATAAAGAAGTAGAGACTCCTGAGAAAAAGCAGAATGACCAGCGAAATCGGAAAAGAA
AAGCTGAACCATATGAAACTAGCCAAGGGAAAGGCACTCCTAGGGGACATAAAATTAGTGATTA
CTTTGAGTTTGCTGGGGGAAGCGGGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTTGCA
CGATCCTCACCGCAACATTCCTTATCCAATCCCTTACCGCGTCGAGTAGAACAGCCTCTCTATG
GTTTAGATGGCAGTACTGCAAAGGAGGCCTCAGAAGAGCAGTCTGCCCTGCCAACCCTCATGTC
AGTGATGTTAGCAAAACCTCGACTTGACACAGAGCAGTTAGCGCCAAGGGGAGCTGGCCTCTGC
TTCACTTTCGTCTCTGCTCAACAAAACAGCCCTTCGTCCACGGGGTCTGGCAATACAGAACATT
CTTGCAGCTCCCAGAAACAGATCTCCATCCAGCACAGGCAGACCCAGTCTGACCTCACAATAGA
AAAAATATCTGCACTAGAAAACAGTAAGAACTCTGACTTAGAGAAGAAGGAAGGAAGAATAGAT
GATTTATTAAGAGCCAACTGTGATTTGAGACGACAGATAGATGAACAGCAAAAGATGCTAGAGA
AATACAAGGAACGATTAAATAGATGTGTCACCATGAGCAAGAAGCTCCTTATAGAAAAGTCAAA
ACAAGAGAAGATGGCATGCAGGGACAAGAGCATGCAGGACCGATTGCGATTAGGTCACTTTACA
ACTGTCCGGCATGGAGCCTCTTTTACTGAACAGTGGACAGATGGTTATGCTTTCCAAAACCTCA
TCAAGCAACAGGAAAGGATAAATTCACAGAGAGAAGAGATAGAAAGGCAACGGAAAATGTTAGC
AAAACGGAAACCCCCTGCCATGGGTCAGGCCCCTCCCGCAACCAATGAGCAGAAACAACGGAAA
AGCAAGACCAATGGAGCTGAAAATGAAACGTTAACCTTAGCTGAATACCATGAACAAGAAGAAA
TCTTCAAACTTAGATTAGGTCATCTTAAGAAAGAGGAAGCAGAAATCCAGGCAGAACTGGAAAG
GCTAGAAAGGGTTAGGAATCTACACATCAGGGAATTAAAAAGGATACATAATGAAGATAATTCA
CAGTTTAAAGACCACCCAACACTAAATGACAGATATTTGTTGTTACATCTTTTGGGTAGAGGAG
GTTTCAGTGAAGTTTACAAGGCGTTTGATCTAACGGAGCAAAGATATGTAGCTGTGAAAATTCA
CCAGTTAAATAAAAACTGGAGAGATGAGAAAAAGGAGAATTACCACAAGCATGCGTGTAGGGAA
TACCGGATTCACAAAGAACTGGATCACCCCAGAATAGTGAAGCTGTATGATTACTTTTCACTGG
ACACTGACTCGTTTTGTACAGTATTAGAATACTGTGAAGGAAATGATCTGGACTTCTACCTAAA
GCAGCACAAATTAATGTCGGAGAAAGAAGCCCGATCCATTATTATGCAGATTGTGAATGCTTTA
AAGTACTTAAATGAAATAAAACCTCCCATCATACACTATGACCTCAAACCAGGTAATATCCTTT
TAGTAAATGGTACAGCGTGTGGAGAGATAAAAATTACAGATTTTGGTCTTTCCAAGATCATGGA
TGACGATAGCTACAATTCAGTGGACGGCATGGAGCTAACGTCACAAGGTGCTGGTACTTATTGG
TATTTGCCACCAGAGTGTTTTGTGGTTGGGAAAGAGCCACCAAAGATCTCAAATAAAGTCGATG
TCTGGTCAGTGGGTGTGATCTTCTACCAGTGTCTGTATGGGAGGAAGCCTTTTGGTCATAACCA
GTCCCAGCAAGATATTCTACAAGAGAATACTATTCTTAAAGCTACTGAAGTACAGTTCCCGCCC
AAGCCAGTAGTAACACCTGAAGCAAAGGCGTTTATCAGGCGATGTTTGGCCTATCGAAAGGAAG
ACCGCATTGATGTGCAGCAGCTGGCCTGTGACCCCTACTTGTTGCCTCACATCCGAAAGTCAGT
CTCCACAAGTAGTCCTGCAGGAGCTGCCATTGCATCAACCTCGGGGGCATCCAATAACAGTTCT
TCGAATTGAGACCAACTCCCAAGGCCACTAACTGTTCAGCACACGAAGTGGACACATGGCATTC
AGCAGTGGGTTTGGAACATAGTGAATCCGAATGGATCTCATGAAACCTGTACCAGGTGCTTTTA
TTTTCTTGCTTTTTTTCCCATCCATAGAGCATGACAGCATCGATTCTCATTGAGGAGAAGCCTT
GGGCAGCTCTGGCCAGGCCTCATAGGAAAAGGCCCCTCCCGAGGTTCCAGCGTCAACGGTCACC
ATGGGTGGCTGCTCTGAGTGAGGAAAAAAATTAAAAAGAAAAAACTGGTTCCATGTACTGTGAA
CTTGAAAACATGCAGACTCAGGGGGTTCCCTGACGCAGTGCTTCAGATGAAGAATGTGGACTTG
AAAATACAGACTGGGCTAGTCCAGTGTCTATATTTAAACTTGCTCTTTTCTTTTAATAAAGTTT
AGGTAACATCTCCTAAAAAGCTGGTAGCACAAGGCTTGACTGGGGATGGCGTTTGACTTCGGAG
GACAAAGTTGCTACTGCCATTAAAGGCACTAGAGTTAGTGTGCTAGCCCCGAGTAAGCTCAGTC
TCTAAAACGTGCAGCTCCCTCGCCCCTTCTTATTTTTAAAGAATACATTTGGTCATAAAGTGAA
ACCCGTATTAGCGAGTACGTGGCAATGTTCATTCCAGTCAGATGCAGCTTTCTCCTCCATCTGG
GCTCCGCTTGTGAATGCTTCTCTCACCTCAGTAGGGAGAAACGGGGTTCTGAGATGCGTGGGTT
TTGCCATCGGACAAAGAATGAGGTTAGAAGACCGCAGTTTGGAGTCTCTAGGTTTTCAGATATT
TCTTCACAATTTGAACACTTGACGGTTGTCCCTTTTAATTTATTTGAAGTGCTATTTTTTTAAA
TAAAGGTTCATCTGTCCATGCA

hide sequence

RefSeq Acc Id:

XM_017597336 ⟹ XP_017452825

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,656,780 - 90,748,427 (+)	NCBI
mRatBN7.2	10	90,156,895 - 90,248,562 (+)	NCBI
Rnor_6.0	10	93,415,441 - 93,507,277 (+)	NCBI

Sequence:

show sequence

TTACACCGATCACTACTAATCCGGACCGAACCGATCCGGATTAAGGGGCCGGAGGCGGGTCCTG
GGCACTAGCGGTTCCGACCCCCCCCACCCCGCCCTCTGCGCCGCACCCGAGTGGCCCCCCCAAC
CGAGCCGGCCCCCACTTCTCGGCCCGACCCGGACCCTTCTGCGCCTCCCTTGGCCTTTGTCCGG
CGCCAGGAGGCCGGCCCCGCGCCCCCCGGCGGCCGCCCGGGCCCGGGCCCGCGTCAGGCGCCTG
GCTCTGTACGCGAGCTCGGGGATCTGCGGCCTCCGTGGCCCCCCTCCCCCGCCCGCCCTCTCGT
GGAGCCCGGCGCCGGCGGCGGCTGCCCGGGCGGGGGGTTGCGGCGCTCAGGAGAGGCCCCGGCT
CCGCCCCGGGCCTGCCCAGGGGGAGAGCAGAACGATCGGCAACCGGGTCGGGTCGGGGCCCCTC
CCGAGAGGAGCGTGGAGCGGCAGCGGCGGCAGAAATGATGGAAGAACTGCACAGCCTGGACCCA
CGGAGGCAGGAGTTACTGGAGGCCAGGTTCACTGGGGTTGGCGTAAGTAAGCGTCGAGTAGAAC
AGCCTCTCTATGGTTTAGATGGCAGTACTGCAAAGGAGGCCTCAGAAGAGCAGTCTGCCCTGCC
AACCCTCATGTCAGTGATGTTAGCAAAACCTCGACTTGACACAGAGCAGTTAGCGCCAAGGGGA
GCTGGCCTCTGCTTCACTTTCGTCTCTGCTCAACAAAACAGCCCTTCGTCCACGGGGTCTGGCA
ATACAGAACATTCTTGCAGCTCCCAGAAACAGATCTCCATCCAGCACAGGCAGACCCAGTCTGA
CCTCACAATAGAAAAAATATCTGCACTAGAAAACAGTAAGAACTCTGACTTAGAGAAGAAGGAA
GGAAGAATAGATGATTTATTAAGAGCCAACTGTGATTTGAGACGACAGATAGATGAACAGCAAA
AGATGCTAGAGAAATACAAGGAACGATTAAATAGATGTGTCACCATGAGCAAGAAGCTCCTTAT
AGAAAAGTCAAAACAAGAGAAGATGGCATGCAGGGACAAGAGCATGCAGGACCGATTGCGATTA
GGTCACTTTACAACTGTCCGGCATGGAGCCTCTTTTACTGAACAGTGGACAGATGGTTATGCTT
TCCAAAACCTCATCAAGCAACAGGAAAGGATAAATTCACAGAGAGAAGAGATAGAAAGGCAACG
GAAAATGTTAGCAAAACGGAAACCCCCTGCCATGGGTCAGGCCCCTCCCGCAACCAATGAGCAG
AAACAACGGAAAAGCAAGACCAATGGAGCTGAAAATGAAACGTTAACCTTAGCTGAATACCATG
AACAAGAAGAAATCTTCAAACTTAGATTAGGTCATCTTAAGAAAGAGGAAGCAGAAATCCAGGC
AGAACTGGAAAGGCTAGAAAGGGTTAGGAATCTACACATCAGGGAATTAAAAAGGATACATAAT
GAAGATAATTCACAGTTTAAAGACCACCCAACACTAAATGACAGATATTTGTTGTTACATCTTT
TGGGTAGAGGAGGTTTCAGTGAAGTTTACAAGGCGTTTGATCTAACGGAGCAAAGATATGTAGC
TGTGAAAATTCACCAGTTAAATAAAAACTGGAGAGATGAGAAAAAGGAGAATTACCACAAGCAT
GCGTGTAGGGAATACCGGATTCACAAAGAACTGGATCACCCCAGAATAGTGAAGCTGTATGATT
ACTTTTCACTGGACACTGACTCGTTTTGTACAGTATTAGAATACTGTGAAGGAAATGATCTGGA
CTTCTACCTAAAGCAGCACAAATTAATGTCGGAGAAAGAAGCCCGATCCATTATTATGCAGATT
GTGAATGCTTTAAAGTACTTAAATGAAATAAAACCTCCCATCATACACTATGACCTCAAACCAG
GTAATATCCTTTTAGTAAATGGTACAGCGTGTGGAGAGATAAAAATTACAGATTTTGGTCTTTC
CAAGATCATGGATGACGATAGCTACAATTCAGTGGACGGCATGGAGCTAACGTCACAAGGTGCT
GGTACTTATTGGTATTTGCCACCAGAGTGTTTTGTGGTTGGGAAAGAGCCACCAAAGATCTCAA
ATAAAGTCGATGTCTGGTCAGTGGGTGTGATCTTCTACCAGTGTCTGTATGGGAGGAAGCCTTT
TGGTCATAACCAGTCCCAGCAAGATATTCTACAAGAGAATACTATTCTTAAAGCTACTGAAGTA
CAGTTCCCGCCCAAGCCAGTAGTAACACCTGAAGCAAAGGCGTTTATCAGGCGATGTTTGGCCT
ATCGAAAGGAAGACCGCATTGATGTGCAGCAGCTGGCCTGTGACCCCTACTTGTTGCCTCACAT
CCGAAAGTCAGTCTCCACAAGTAGTCCTGCAGGAGCTGCCATTGCATCAACCTCGGGGGCATCC
AATAACAGTTCTTCGAATTGAGACCAACTCCCAAGGCCACTAACTGTTCAGCACACGAAGTGGA
CACATGGCATTCAGCAGTGGGTTTGGAACATAGTGAATCCGAATGGATCTCATGAAACCTGTAC
CAGGTGCTTTTATTTTCTTGCTTTTTTTCCCATCCATAGAGCATGACAGCATCGATTCTCATTG
AGGAGAAGCCTTGGGCAGCTCTGGCCAGGCCTCATAGGAAAAGGCCCCTCCCGAGGTTCCAGCG
TCAACGGTCACCATGGGTGGCTGCTCTGAGTGAGGAAAAAAATTAAAAAGAAAAAACTGGTTCC
ATGTACTGTGAACTTGAAAACATGCAGACTCAGGGGGTTCCCTGACGCAGTGCTTCAGATGAAG
AATGTGGACTTGAAAATACAGACTGGGCTAGTCCAGTGTCTATATTTAAACTTGCTCTTTTCTT
TTAATAAAGTTTAGGTAACATCTCCTAAAAAGCTGGTAGCACAAGGCTTGACTGGGGATGGCGT
TTGACTTCGGAGGACAAAGTTGCTACTGCCATTAAAGGCACTAGAGTTAGTGTGCTAGCCCCGA
GTAAGCTCAGTCTCTAAAACGTGCAGCTCCCTCGCCCCTTCTTATTTTTAAAGAATACATTTGG
TCATAAAGTGAAACCCGTATTAGCGAGTACGTGGCAATGTTCATTCCAGTCAGATGCAGCTTTC
TCCTCCATCTGGGCTCCGCTTGTGAATGCTTCTCTCACCTCAGTAGGGAGAAACGGGGTTCTGA
GATGCGTGGGTTTTGCCATCGGACAAAGAATGAGGTTAGAAGACCGCAGTTTGGAGTCTCTAGG
TTTTCAGATATTTCTTCACAATTTGAACACTTGACGGTTGTCCCTTTTAATTTATTTGAAGTGC
TATTTTTTTAAATAAAGGTTCATCTGTCCATGCA

hide sequence

RefSeq Acc Id:

XM_039086133 ⟹ XP_038942061

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,653,763 - 90,748,427 (+)	NCBI
mRatBN7.2	10	90,154,449 - 90,248,562 (+)	NCBI

RefSeq Acc Id:

XM_039086134 ⟹ XP_038942062

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,656,780 - 90,748,427 (+)	NCBI
mRatBN7.2	10	90,156,895 - 90,248,562 (+)	NCBI

RefSeq Acc Id:

XM_039086137 ⟹ XP_038942065

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,656,780 - 90,748,427 (+)	NCBI
mRatBN7.2	10	90,156,894 - 90,248,562 (+)	NCBI

RefSeq Acc Id:

XM_039086138 ⟹ XP_038942066

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,653,769 - 90,748,427 (+)	NCBI
mRatBN7.2	10	90,154,449 - 90,248,562 (+)	NCBI

RefSeq Acc Id:

XM_039086139 ⟹ XP_038942067

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,648,623 - 90,748,427 (+)	NCBI
mRatBN7.2	10	90,156,010 - 90,248,562 (+)	NCBI

RefSeq Acc Id:

XM_039086141 ⟹ XP_038942069

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,659,120 - 90,748,427 (+)	NCBI
mRatBN7.2	10	90,159,241 - 90,248,562 (+)	NCBI

RefSeq Acc Id:

XM_063269184 ⟹ XP_063125254

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,657,307 - 90,748,427 (+)	NCBI

RefSeq Acc Id:

XM_063269185 ⟹ XP_063125255

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,657,307 - 90,748,427 (+)	NCBI

RefSeq Acc Id:

XM_063269186 ⟹ XP_063125256

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,657,304 - 90,748,427 (+)	NCBI

RefSeq Acc Id:

XM_063269187 ⟹ XP_063125257

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,657,302 - 90,748,427 (+)	NCBI

RefSeq Acc Id:

XM_063269188 ⟹ XP_063125258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,657,309 - 90,748,427 (+)	NCBI

RefSeq Acc Id:

XM_063269189 ⟹ XP_063125259

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,657,313 - 90,748,427 (+)	NCBI

RefSeq Acc Id:

XM_063269190 ⟹ XP_063125260

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,657,300 - 90,748,427 (+)	NCBI

RefSeq Acc Id:

XM_063269191 ⟹ XP_063125261

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,656,780 - 90,748,427 (+)	NCBI

RefSeq Acc Id:

XM_063269192 ⟹ XP_063125262

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	90,656,780 - 90,748,427 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178581	(Get FASTA)	NCBI Sequence Viewer
	XP_006247636	(Get FASTA)	NCBI Sequence Viewer
	XP_006247638	(Get FASTA)	NCBI Sequence Viewer
	XP_017452825	(Get FASTA)	NCBI Sequence Viewer
	XP_038942061	(Get FASTA)	NCBI Sequence Viewer
	XP_038942062	(Get FASTA)	NCBI Sequence Viewer
	XP_038942065	(Get FASTA)	NCBI Sequence Viewer
	XP_038942066	(Get FASTA)	NCBI Sequence Viewer
	XP_038942067	(Get FASTA)	NCBI Sequence Viewer
	XP_038942069	(Get FASTA)	NCBI Sequence Viewer
	XP_063125254	(Get FASTA)	NCBI Sequence Viewer
	XP_063125255	(Get FASTA)	NCBI Sequence Viewer
	XP_063125256	(Get FASTA)	NCBI Sequence Viewer
	XP_063125257	(Get FASTA)	NCBI Sequence Viewer
	XP_063125258	(Get FASTA)	NCBI Sequence Viewer
	XP_063125259	(Get FASTA)	NCBI Sequence Viewer
	XP_063125260	(Get FASTA)	NCBI Sequence Viewer
	XP_063125261	(Get FASTA)	NCBI Sequence Viewer
	XP_063125262	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86544	(Get FASTA)	NCBI Sequence Viewer
	EDM06330	(Get FASTA)	NCBI Sequence Viewer
	EDM06331	(Get FASTA)	NCBI Sequence Viewer
	EDM06332	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062555
	ENSRNOP00000062555.2
	ENSRNOP00000084710
	ENSRNOP00000084710.1
	ENSRNOP00000088191.1
	ENSRNOP00000091443.1
	ENSRNOP00000096955.1

RefSeq Acc Id:

NP_001178581 ⟸ NM_001191652

- UniProtKB:

F1LPP2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMEELHSLDPRRQELLEARFTGVGVSKGPLNSESSNQSLCSVGSLSDKEVETPEKKQNDQRNRK
RKAEPYETSQGKGTPRGHKISDYFEFAGGSGPGTSPGRSVPPVARSSPQHSLSNPLPRRVEQPL
YGLDGSTAKEASEEQSALPTLMSVMLAKPRLDTEQLAPRGAGLCFTFVSAQQNSPSSTGSGNTE
HSCSSQKQISIQHRQTQSDLTIEKISALENSKNSDLEKKEGRIDDLLRANCDLRRQIDEQQKML
EKYKERLNRCVTMSKKLLIEKSKQEKMACRDKSMQDRLRLGHFTTVRHGASFTEQWTDGYAFQN
LIKQQERINSQREEIERQRKMLAKRKPPAMGQAPPATNEQKQRKSKTNGAENETLTLAEYHEQE
EIFKLRLGHLKKEEAEIQAELERLERVRNLHIRELKRIHNEDNSQFKDHPTLNDRYLLLHLLGR
GGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFS
LDTDSFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNI
LLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKV
DVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILKATEVQFPPKPVVTPEAKAFIRRCLAYRK
EDRIDVQQLACDPYLLPHIRKSVSTSSPAGAAIASTSGASNNSSSN

hide sequence

RefSeq Acc Id:	XP_006247636 ⟸ XM_006247574
- Peptide Label:	isoform X4
- UniProtKB:	F1LPP2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMEELHSLDPRRQELLEARFTGVGVSKGPLNSESSNQSLCSVGSLSDKEVETPEKKQNDQRNRK RKAEPYETSQGKGTPRGHKISDYFEFAGGSGPGTSPGRSVPPVARSSPQHSLSNPLPRRVEQPL YGLDGSTAKEASEEQSALPTLMSVMLAKPRLDTEQLAPRGAGLCFTFVSAQQNSPSSTGSGNTE HSCSSQKQISIQHRQTQSDLTIEKISALENSKNSDLEKKEGRIDDLLRANCDLRRQIDEQQKML EKYKERLNRCVTMSKKLLIEKSKQEKMACRDKSMQDRLRLGHFTTVRHGASFTEQWTDGYAFQN LIKQQERINSQREEIERQRKMLAKRKPPAMGQAPPATNEQKQRKSKTNGAENETLTLAEYHEQE EIFKLRLGHLKKEEAEIQAELERLERVRNLHIRELKRIHNEDNSQFKDHPTLNDRYLLLHLLGR GGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFS LDTDSFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNI LLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKV DVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILKATEVQFPPKPVVTPEAKAFIRRCLAYRK EDRIDVQQLACDPYLLPHIRKSVSTSSPAGAAIASTSGASNNSSSN hide sequence

RefSeq Acc Id:	XP_006247638 ⟸ XM_006247576
- Peptide Label:	isoform X4
- UniProtKB:	F1LPP2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMEELHSLDPRRQELLEARFTGVGVSKGPLNSESSNQSLCSVGSLSDKEVETPEKKQNDQRNRK RKAEPYETSQGKGTPRGHKISDYFEFAGGSGPGTSPGRSVPPVARSSPQHSLSNPLPRRVEQPL YGLDGSTAKEASEEQSALPTLMSVMLAKPRLDTEQLAPRGAGLCFTFVSAQQNSPSSTGSGNTE HSCSSQKQISIQHRQTQSDLTIEKISALENSKNSDLEKKEGRIDDLLRANCDLRRQIDEQQKML EKYKERLNRCVTMSKKLLIEKSKQEKMACRDKSMQDRLRLGHFTTVRHGASFTEQWTDGYAFQN LIKQQERINSQREEIERQRKMLAKRKPPAMGQAPPATNEQKQRKSKTNGAENETLTLAEYHEQE EIFKLRLGHLKKEEAEIQAELERLERVRNLHIRELKRIHNEDNSQFKDHPTLNDRYLLLHLLGR GGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFS LDTDSFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNI LLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKV DVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILKATEVQFPPKPVVTPEAKAFIRRCLAYRK EDRIDVQQLACDPYLLPHIRKSVSTSSPAGAAIASTSGASNNSSSN hide sequence

RefSeq Acc Id:	XP_017452825 ⟸ XM_017597336
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6GMB5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMEELHSLDPRRQELLEARFTGVGVSKRRVEQPLYGLDGSTAKEASEEQSALPTLMSVMLAKPR LDTEQLAPRGAGLCFTFVSAQQNSPSSTGSGNTEHSCSSQKQISIQHRQTQSDLTIEKISALEN SKNSDLEKKEGRIDDLLRANCDLRRQIDEQQKMLEKYKERLNRCVTMSKKLLIEKSKQEKMACR DKSMQDRLRLGHFTTVRHGASFTEQWTDGYAFQNLIKQQERINSQREEIERQRKMLAKRKPPAM GQAPPATNEQKQRKSKTNGAENETLTLAEYHEQEEIFKLRLGHLKKEEAEIQAELERLERVRNL HIRELKRIHNEDNSQFKDHPTLNDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWR DEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFYLKQHKLMSE KEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSV DGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQDILQ ENTILKATEVQFPPKPVVTPEAKAFIRRCLAYRKEDRIDVQQLACDPYLLPHIRKSVSTSSPAG AAIASTSGASNNSSSN hide sequence

RefSeq Acc Id:

ENSRNOP00000062555 ⟸ ENSRNOT00000066484

RefSeq Acc Id:	XP_038942061 ⟸ XM_039086133
- Peptide Label:	isoform X4
- UniProtKB:	F1LPP2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942066 ⟸ XM_039086138
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6GMB5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942067 ⟸ XM_039086139
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6GMB5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942065 ⟸ XM_039086137
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I6GMB5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942062 ⟸ XM_039086134
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I5ZZQ4 (UniProtKB/TrEMBL), A6HJX5 (UniProtKB/TrEMBL), F1LPP2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942069 ⟸ XM_039086141
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I6GMB5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000084710 ⟸ ENSRNOT00000106328

RefSeq Acc Id:

ENSRNOP00000091443 ⟸ ENSRNOT00000118444

RefSeq Acc Id:

ENSRNOP00000096955 ⟸ ENSRNOT00000120296

RefSeq Acc Id:

ENSRNOP00000088191 ⟸ ENSRNOT00000096733

RefSeq Acc Id:	XP_063125261 ⟸ XM_063269191
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063125262 ⟸ XM_063269192
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063125260 ⟸ XM_063269190
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063125257 ⟸ XM_063269187
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063125256 ⟸ XM_063269186
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063125254 ⟸ XM_063269184
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063125255 ⟸ XM_063269185
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063125258 ⟸ XM_063269188
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063125259 ⟸ XM_063269189
- Peptide Label:	isoform X8

Protein Domains

Protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LPP2-F1-model_v2	AlphaFold	F1LPP2	1-750	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697825

Promoter ID:

EPDNEW_R8349

Type:

initiation region

Name:

Tlk2_1

Description:

tousled-like kinase 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R8350

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	93,415,456 - 93,415,516	EPDNEW

RGD ID:

13697826

Promoter ID:

EPDNEW_R8350

Type:

single initiation site

Name:

Tlk2_2

Description:

tousled-like kinase 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R8349

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	93,415,582 - 93,415,642	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310907	AgrOrtholog
BioCyc Gene	G2FUF-23003	BioCyc
Ensembl Genes	ENSRNOG00000006285	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066484	ENTREZGENE
	ENSRNOT00000066484.3	UniProtKB/TrEMBL
	ENSRNOT00000096733.1	UniProtKB/TrEMBL
	ENSRNOT00000106328.1	UniProtKB/TrEMBL
	ENSRNOT00000118444.1	UniProtKB/TrEMBL
	ENSRNOT00000120296.1	UniProtKB/TrEMBL
Gene3D-CATH	Transferase(Phosphotransferase) domain 1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7133901	IMAGE-MGC_LOAD
InterPro	Kinase-like_dom	UniProtKB/TrEMBL
	Prot_kinase_cat_dom	UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/TrEMBL
	Ser/Thr_kinase_AS	UniProtKB/TrEMBL
MGC_CLONE	MGC:105897	IMAGE-MGC_LOAD
NCBI Gene	303592	ENTREZGENE
PANTHER	MIXED LINEAGE PROTEIN KINASE	UniProtKB/TrEMBL
	PTHR22974:SF20	UniProtKB/TrEMBL
Pfam	Pkinase	UniProtKB/TrEMBL
PhenoGen	Tlk2	PhenoGen
PROSITE	PROTEIN_KINASE_ATP	UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000006285	RatGTEx
SMART	S_TKc	UniProtKB/TrEMBL
Superfamily-SCOP	Kinase_like	UniProtKB/TrEMBL
UniProt	A0A8I5ZZQ4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A8V4_RAT	UniProtKB/TrEMBL
	A0A8I6ADQ5_RAT	UniProtKB/TrEMBL
	A0A8I6GMB5	ENTREZGENE, UniProtKB/TrEMBL
	A6HJX5	ENTREZGENE, UniProtKB/TrEMBL
	F1LPP2	ENTREZGENE, UniProtKB/TrEMBL
	Q5RJQ5_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-25	Tlk2	tousled-like kinase 2	Tlk2	tousled-like kinase 2 (Arabidopsis)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-05-19	Tlk2	tousled-like kinase 2 (Arabidopsis)	Tlk2_predicted	tousled-like kinase 2 (Arabidopsis) (predicted)	Symbol and Name updated	1299863	APPROVED
2008-05-19	Tlk2_predicted	tousled-like kinase 2 (Arabidopsis) (predicted)	Tlk2	tousled-like kinase 2 (Arabidopsis)	Data merged from RGD:620339	737654	APPROVED
2005-07-08	Tlk2	tousled-like kinase 2 (Arabidopsis)		tousled-like kinase 2	Name updated	1299863	APPROVED
2005-01-12	Tlk2_predicted	tousled-like kinase 2 (Arabidopsis) (predicted)			Symbol and Name status set to approved	70820	APPROVED
2002-08-07	Tlk2	tousled-like kinase 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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