Gprc5a (G protein-coupled receptor, class C, group 5, member A) - Rat Genome Database

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Gene: Gprc5a (G protein-coupled receptor, class C, group 5, member A) Rattus norvegicus
Analyze
Symbol: Gprc5a
Name: G protein-coupled receptor, class C, group 5, member A
RGD ID: 1310804
Description: Predicted to enable protein kinase activator activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in vesicle. Predicted to be part of receptor complex. Predicted to be active in extracellular exosome and plasma membrane. Orthologous to human GPRC5A (G protein-coupled receptor class C group 5 member A); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: G protein-coupled receptor, family C, group 5, member A; LOC312790; MGC156777; Rai3; retinoic acid induced 3; retinoic acid-induced protein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84169,634,896 - 169,653,627 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4169,634,748 - 169,653,625 (+)EnsemblGRCr8
mRatBN7.24167,903,542 - 167,922,276 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4167,903,542 - 167,922,260 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4174,198,776 - 174,217,507 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04169,980,000 - 169,998,731 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04168,604,005 - 168,622,716 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04168,832,937 - 168,851,650 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4168,832,910 - 168,851,652 (+)Ensemblrn6Rnor6.0
Rnor_5.04233,105,139 - 233,123,586 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44171,987,364 - 172,006,276 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4156,499,535 - 156,518,603 (+)NCBICelera
RGSC_v3.14172,232,300 - 172,251,197 (+)NCBI
Cytogenetic Map4q43NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-bromohexadecanoic acid  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
7,12-dimethyltetraphene  (ISO)
acrylamide  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bicalutamide  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
carbon nanotube  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (EXP)
dorsomorphin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
entinostat  (ISO)
ferroheme b  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
glycidol  (EXP)
Heliotrine  (ISO)
heme b  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
iron atom  (EXP)
iron(0)  (EXP)
ivermectin  (ISO)
lead diacetate  (ISO)
lipopolysaccharide  (ISO)
menadione  (ISO)
mercury dibromide  (ISO)
methotrexate  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Nutlin-3  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
Salinomycin  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
Senkirkine  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP)
tetrathiomolybdate(2-)  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
Tributyltin oxide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18000218   PMID:19056867   PMID:19199708   PMID:23376485   PMID:23533145   PMID:25468996   PMID:25744720  


Genomics

Comparative Map Data
Gprc5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84169,634,896 - 169,653,627 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4169,634,748 - 169,653,625 (+)EnsemblGRCr8
mRatBN7.24167,903,542 - 167,922,276 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4167,903,542 - 167,922,260 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4174,198,776 - 174,217,507 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04169,980,000 - 169,998,731 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04168,604,005 - 168,622,716 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04168,832,937 - 168,851,650 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4168,832,910 - 168,851,652 (+)Ensemblrn6Rnor6.0
Rnor_5.04233,105,139 - 233,123,586 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44171,987,364 - 172,006,276 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4156,499,535 - 156,518,603 (+)NCBICelera
RGSC_v3.14172,232,300 - 172,251,197 (+)NCBI
Cytogenetic Map4q43NCBI
GPRC5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381212,891,562 - 12,917,937 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1212,890,782 - 12,917,937 (+)Ensemblhg38GRCh38
GRCh371213,044,496 - 13,070,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361212,935,223 - 12,957,867 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1218,192,808 - 18,215,452 (+)NCBICelera
Cytogenetic Map12p13.1NCBI
HuRef1212,813,598 - 12,836,110 (+)NCBIHuRef
CHM1_11213,009,322 - 13,031,947 (+)NCBICHM1_1
T2T-CHM13v2.01212,765,164 - 12,791,546 (+)NCBIT2T-CHM13v2.0
Gprc5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396135,042,660 - 135,061,707 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6135,042,649 - 135,061,707 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm386135,065,662 - 135,084,709 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6135,065,651 - 135,084,709 (+)Ensemblmm10GRCm38
MGSCv376135,015,680 - 135,034,727 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366135,031,380 - 135,050,396 (+)NCBIMGSCv36mm8
Celera6138,021,758 - 138,040,849 (+)NCBICelera
Cytogenetic Map6G1NCBI
cM Map665.83NCBI
Gprc5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554139,765,564 - 9,785,856 (+)Ensembl
ChiLan1.0NW_0049554139,765,564 - 9,784,847 (+)NCBIChiLan1.0ChiLan1.0
GPRC5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21018,349,864 - 18,372,499 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11218,346,629 - 18,369,246 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01212,905,682 - 12,928,596 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11213,282,865 - 13,309,963 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1213,282,865 - 13,305,727 (+)EnsemblpanPan2panpan1.1
GPRC5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12733,438,196 - 33,460,062 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2733,441,527 - 33,460,377 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2712,984,918 - 13,006,546 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02733,744,328 - 33,766,173 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2733,744,346 - 33,765,886 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12733,638,581 - 33,660,431 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02733,588,704 - 33,610,563 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02712,719,586 - 12,741,585 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gprc5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494594,699,562 - 94,715,710 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365874,427,189 - 4,443,351 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365874,427,208 - 4,443,302 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPRC5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl559,565,799 - 59,586,600 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1559,565,793 - 59,586,641 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GPRC5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11112,800,517 - 12,820,861 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1112,816,729 - 12,820,805 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606922,498,236 - 22,519,706 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gprc5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475225,061,379 - 25,065,560 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475225,061,475 - 25,077,029 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Gprc5a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1614,360,552 - 14,379,582 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gprc5a
123 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:359
Count of miRNA genes:216
Interacting mature miRNAs:253
Transcripts:ENSRNOT00000011134
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4149763204169799698Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4124700988169700988Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4148121375176967367Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat

Markers in Region
BF414790  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24167,903,414 - 167,903,509 (+)MAPPERmRatBN7.2
Rnor_6.04168,832,810 - 168,832,904NCBIRnor6.0
Rnor_5.04233,105,012 - 233,105,106UniSTSRnor5.0
RGSC_v3.44171,987,237 - 171,987,331UniSTSRGSC3.4
Celera4156,499,408 - 156,499,502UniSTS
RH 3.4 Map41021.1UniSTS
Cytogenetic Map4q43UniSTS
BI302197  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24167,917,238 - 167,917,396 (+)MAPPERmRatBN7.2
Rnor_6.04168,846,593 - 168,846,750NCBIRnor6.0
Rnor_5.04233,118,487 - 233,118,644UniSTSRnor5.0
RGSC_v3.44172,001,239 - 172,001,396UniSTSRGSC3.4
Celera4156,513,212 - 156,513,369UniSTS
RH 3.4 Map4951.4UniSTS
Cytogenetic Map4q43UniSTS
Gprc5a  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24167,916,646 - 167,916,898 (+)MAPPERmRatBN7.2
Rnor_6.04168,846,001 - 168,846,252NCBIRnor6.0
Rnor_5.04233,117,895 - 233,118,146UniSTSRnor5.0
Celera4156,512,620 - 156,512,871UniSTS
Cytogenetic Map4q43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 150 87 87 56 87 56 6 347 187 10 129 80 91 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000011134   ⟹   ENSRNOP00000011134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4169,634,855 - 169,653,625 (+)Ensembl
mRatBN7.2 Ensembl4167,903,542 - 167,922,260 (+)Ensembl
Rnor_6.0 Ensembl4168,832,910 - 168,851,652 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000161306   ⟹   ENSRNOP00000105943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4169,634,748 - 169,653,625 (+)Ensembl
RefSeq Acc Id: NM_001079890   ⟹   NP_001073359
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84169,634,896 - 169,653,627 (+)NCBI
mRatBN7.24167,903,542 - 167,922,276 (+)NCBI
Rnor_6.04168,832,937 - 168,851,650 (+)NCBI
Rnor_5.04233,105,139 - 233,123,586 (+)NCBI
RGSC_v3.44171,987,364 - 172,006,276 (+)RGD
Celera4156,499,535 - 156,518,603 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001073359 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH86372 (Get FASTA)   NCBI Sequence Viewer  
  AAI28768 (Get FASTA)   NCBI Sequence Viewer  
  EDM01637 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011134.6
  ENSRNOP00000105943
  ENSRNOP00000105943.1
RefSeq Acc Id: NP_001073359   ⟸   NM_001079890
- UniProtKB: A1A5R2 (UniProtKB/TrEMBL),   F7FKD0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011134   ⟸   ENSRNOT00000011134
Ensembl Acc Id: ENSRNOP00000105943   ⟸   ENSRNOT00000161306
Protein Domains
G-protein coupled receptors family 3 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A1A5R2-F1-model_v2 AlphaFold A1A5R2 1-358 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693455
Promoter ID:EPDNEW_R3980
Type:multiple initiation site
Name:Gprc5a_1
Description:G protein-coupled receptor, class C, group 5, member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04168,832,927 - 168,832,987EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310804 AgrOrtholog
BioCyc Gene G2FUF-42639 BioCyc
Ensembl Genes ENSRNOG00000008412 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011134.8 UniProtKB/TrEMBL
  ENSRNOT00000161306 ENTREZGENE
  ENSRNOT00000161306.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7124284 IMAGE-MGC_LOAD
  IMAGE:7125833 IMAGE-MGC_LOAD
InterPro GPCR_3_C UniProtKB/TrEMBL
  RA-inducible_GPCR3 UniProtKB/TrEMBL
KEGG Report rno:312790 UniProtKB/TrEMBL
MGC_CLONE MGC:105873 IMAGE-MGC_LOAD
  MGC:156777 IMAGE-MGC_LOAD
NCBI Gene 312790 ENTREZGENE
PANTHER G PROTEIN COUPLED RECEPTOR, CLASS C, GROUP 5 UniProtKB/TrEMBL
  RETINOIC ACID-INDUCED PROTEIN 3 UniProtKB/TrEMBL
Pfam 7tm_3 UniProtKB/TrEMBL
PhenoGen Gprc5a PhenoGen
RatGTEx ENSRNOG00000008412 RatGTEx
UniProt A0ABK0LV83_RAT UniProtKB/TrEMBL
  A1A5R2 ENTREZGENE, UniProtKB/TrEMBL
  F7FKD0 ENTREZGENE, UniProtKB/TrEMBL
  Q5RK14_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-02-06 Gprc5a  G protein-coupled receptor, class C, group 5, member A  Gprc5a  G protein-coupled receptor, family C, group 5, member A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Gprc5a  G protein-coupled receptor, family C, group 5, member A  Rai3  retinoic acid induced 3  Symbol and Name updated 1299863 APPROVED
2005-12-06 Rai3  retinoic acid induced 3  Rai3_predicted  retinoic acid induced 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rai3_predicted  retinoic acid induced 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED