Itprid2 (ITPR interacting domain containing 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Itprid2 (ITPR interacting domain containing 2) Rattus norvegicus
Analyze
Symbol: Itprid2
Name: ITPR interacting domain containing 2
RGD ID: 1310767
Description: Predicted to enable actin filament binding activity. Predicted to be located in cytosol; nucleoplasm; and plasma membrane. Orthologous to human ITPRID2 (ITPR interacting domain containing 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC311146; sperm specific antigen 2; sperm-specific antigen 2; sperm-specific antigen 3; Ssfa2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8384,943,572 - 84,980,993 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl384,939,808 - 84,980,899 (+)EnsemblGRCr8
mRatBN7.2364,536,707 - 64,573,978 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl364,536,707 - 64,573,978 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx367,894,560 - 67,931,766 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0376,478,148 - 76,515,356 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0374,224,646 - 74,261,896 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0366,593,767 - 66,631,143 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl366,593,934 - 66,631,723 (+)Ensemblrn6Rnor6.0
Rnor_5.0373,152,918 - 73,190,286 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4362,438,270 - 62,475,545 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera363,996,187 - 64,033,482 (+)NCBICelera
RGSC_v3.1362,307,163 - 62,369,893 (+)NCBI
Cytogenetic Map3q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dimethoxyphenol  (ISO)
2-palmitoylglycerol  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
5-azacytidine  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
coumarin  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dorsomorphin  (ISO)
ethanol  (ISO)
fenamidone  (ISO)
fenthion  (ISO)
folic acid  (ISO)
FR900359  (ISO)
furfural  (ISO)
geldanamycin  (ISO)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
menadione  (ISO)
mercury dichloride  (ISO)
methamphetamine  (ISO)
nickel sulfate  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thimerosal  (ISO)
thioacetamide  (EXP)
torcetrapib  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14673706  


Genomics

Comparative Map Data
Itprid2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8384,943,572 - 84,980,993 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl384,939,808 - 84,980,899 (+)EnsemblGRCr8
mRatBN7.2364,536,707 - 64,573,978 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl364,536,707 - 64,573,978 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx367,894,560 - 67,931,766 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0376,478,148 - 76,515,356 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0374,224,646 - 74,261,896 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0366,593,767 - 66,631,143 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl366,593,934 - 66,631,723 (+)Ensemblrn6Rnor6.0
Rnor_5.0373,152,918 - 73,190,286 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4362,438,270 - 62,475,545 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera363,996,187 - 64,033,482 (+)NCBICelera
RGSC_v3.1362,307,163 - 62,369,893 (+)NCBI
Cytogenetic Map3q24NCBI
ITPRID2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382181,891,730 - 181,930,738 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2181,891,730 - 181,930,738 (+)Ensemblhg38GRCh38
GRCh372182,756,457 - 182,795,465 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362182,464,927 - 182,503,706 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342182,582,187 - 182,620,967NCBI
Celera2176,352,205 - 176,391,198 (+)NCBICelera
Cytogenetic Map2q31.3NCBI
HuRef2174,612,696 - 174,651,501 (+)NCBIHuRef
CHM1_12182,762,334 - 182,801,336 (+)NCBICHM1_1
T2T-CHM13v2.02182,381,516 - 182,420,528 (+)NCBIT2T-CHM13v2.0
Itprid2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39279,419,207 - 79,503,310 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl279,465,696 - 79,503,310 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38279,588,863 - 79,672,966 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl279,635,352 - 79,672,966 (+)Ensemblmm10GRCm38
MGSCv37279,475,582 - 79,513,123 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36279,436,379 - 79,471,673 (+)NCBIMGSCv36mm8
Celera281,294,736 - 81,332,308 (+)NCBICelera
Cytogenetic Map2C3NCBI
cM Map247.58NCBI
Itprid2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540315,386,114 - 15,415,019 (-)Ensembl
ChiLan1.0NW_00495540315,386,116 - 15,421,284 (-)NCBIChiLan1.0ChiLan1.0
ITPRID2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21384,540,533 - 84,579,263 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B84,555,509 - 84,594,236 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B69,154,230 - 69,192,954 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B186,964,020 - 187,002,334 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B186,963,457 - 187,002,334 (+)EnsemblpanPan2panpan1.1
ITPRID2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13624,966,933 - 25,077,502 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3625,039,346 - 25,076,515 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3624,925,034 - 25,035,720 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03625,127,179 - 25,238,259 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3625,199,524 - 25,238,255 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13625,218,569 - 25,329,363 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03625,183,724 - 25,294,812 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03625,319,831 - 25,430,955 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Itprid2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303142,046,075 - 142,091,328 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650910,606,443 - 10,645,230 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493650910,606,449 - 10,645,231 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITPRID2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1587,326,442 - 87,418,089 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11587,326,417 - 87,418,092 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21596,892,259 - 96,945,330 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITPRID2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11067,430,024 - 67,468,865 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1067,430,169 - 67,468,863 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040132,106,347 - 132,145,190 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Itprid2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248443,682,098 - 3,719,203 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248443,682,073 - 3,719,080 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Itprid2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1556,854,028 - 56,891,289 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Itprid2
257 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:221
Count of miRNA genes:154
Interacting mature miRNAs:187
Transcripts:ENSRNOT00000008046
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)35986366387321459Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)35986366387321459Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1582249Bw77Body weight QTL 773.20.0025epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)37359251285062403Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
D3Rat74  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2364,423,730 - 64,423,941 (+)MAPPERmRatBN7.2
Rnor_6.0366,480,395 - 66,480,603NCBIRnor6.0
Rnor_5.0373,039,497 - 73,039,705UniSTSRnor5.0
RGSC_v3.4362,288,168 - 62,288,376RGDRGSC3.4
RGSC_v3.4362,288,169 - 62,288,377UniSTSRGSC3.4
Celera363,883,258 - 63,883,460UniSTS
RGSC_v3.1362,184,492 - 62,184,883RGD
SHRSP x BN Map340.6098UniSTS
SHRSP x BN Map340.6098RGD
FHH x ACI Map343.8499RGD
Cytogenetic Map3q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000008046   ⟹   ENSRNOP00000008046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl384,939,808 - 84,979,879 (+)Ensembl
mRatBN7.2 Ensembl364,536,707 - 64,573,978 (+)Ensembl
Rnor_6.0 Ensembl366,593,934 - 66,631,723 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105305   ⟹   ENSRNOP00000086622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl384,944,261 - 84,979,879 (+)Ensembl
mRatBN7.2 Ensembl364,537,262 - 64,573,978 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119321   ⟹   ENSRNOP00000081997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl384,943,849 - 84,980,899 (+)Ensembl
mRatBN7.2 Ensembl364,536,924 - 64,573,978 (+)Ensembl
RefSeq Acc Id: NM_001107738   ⟹   NP_001101208
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8384,943,632 - 84,980,899 (+)NCBI
mRatBN7.2364,536,707 - 64,573,978 (+)NCBI
Rnor_6.0366,593,775 - 66,631,049 (+)NCBI
Rnor_5.0373,152,918 - 73,190,286 (+)NCBI
RGSC_v3.4362,438,270 - 62,475,545 (+)RGD
Celera363,996,187 - 64,033,482 (+)RGD
Sequence:
RefSeq Acc Id: XM_017591707   ⟹   XP_017447196
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8384,943,572 - 84,980,993 (+)NCBI
mRatBN7.2364,536,712 - 64,573,965 (+)NCBI
Rnor_6.0366,593,767 - 66,631,143 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104867   ⟹   XP_038960795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8384,943,572 - 84,967,352 (+)NCBI
mRatBN7.2364,536,712 - 64,561,029 (+)NCBI
RefSeq Acc Id: XM_063283643   ⟹   XP_063139713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8384,944,310 - 84,980,993 (+)NCBI
RefSeq Acc Id: NP_001101208   ⟸   NM_001107738
- UniProtKB: D3ZLC3 (UniProtKB/TrEMBL),   A6HML6 (UniProtKB/TrEMBL),   A0A8I5ZTD5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447196   ⟸   XM_017591707
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZTD5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000008046   ⟸   ENSRNOT00000008046
RefSeq Acc Id: XP_038960795   ⟸   XM_039104867
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000086622   ⟸   ENSRNOT00000105305
Ensembl Acc Id: ENSRNOP00000081997   ⟸   ENSRNOT00000119321
RefSeq Acc Id: XP_063139713   ⟸   XM_063283643
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A5N9 (UniProtKB/TrEMBL)
Protein Domains
ITPR-interacting

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZLC3-F1-model_v2 AlphaFold D3ZLC3 1-1255 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692169
Promoter ID:EPDNEW_R2693
Type:initiation region
Name:Ssfa2_1
Description:sperm specific antigen 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0366,593,855 - 66,593,915EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310767 AgrOrtholog
BioCyc Gene G2FUF-49231 BioCyc
Ensembl Genes ENSRNOG00000005865 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008046 ENTREZGENE
  ENSRNOT00000008046.8 UniProtKB/TrEMBL
  ENSRNOT00000105305 ENTREZGENE
  ENSRNOT00000105305.2 UniProtKB/TrEMBL
  ENSRNOT00000119321.2 UniProtKB/TrEMBL
InterPro IP3R_bd UniProtKB/TrEMBL
  SSFA2_C UniProtKB/TrEMBL
  TESPA1-like UniProtKB/TrEMBL
KEGG Report rno:311146 UniProtKB/TrEMBL
NCBI Gene 311146 ENTREZGENE
PANTHER PTHR17469 UniProtKB/TrEMBL
  PTHR17469:SF11 UniProtKB/TrEMBL
Pfam KRAP_IP3R_bind UniProtKB/TrEMBL
  SSFA2_C UniProtKB/TrEMBL
PhenoGen Itprid2 PhenoGen
RatGTEx ENSRNOG00000005865 RatGTEx
SMART KRAP_IP3R_bind UniProtKB/TrEMBL
UniProt A0A8I5ZTD5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5N9 ENTREZGENE, UniProtKB/TrEMBL
  A6HML6 ENTREZGENE, UniProtKB/TrEMBL
  D3ZLC3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-06-21 Itprid2  ITPR interacting domain containing 2  Ssfa2  sperm specific antigen 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ssfa2  sperm specific antigen 2   Ssfa2_predicted  sperm specific antigen 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ssfa2_predicted  sperm specific antigen 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED