Bnc2 (basonuclin zinc finger protein 2) - Rat Genome Database

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Gene: Bnc2 (basonuclin zinc finger protein 2) Rattus norvegicus
Analyze
Symbol: Bnc2
Name: basonuclin zinc finger protein 2
RGD ID: 1310694
Description: Predicted to enable rDNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to act upstream of or within several processes, including endochondral bone growth; roof of mouth development; and tongue development. Predicted to be located in chromatin. Predicted to be active in nucleus. Orthologous to human BNC2 (basonuclin zinc finger protein 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: basonuclin 2; LOC298189; zinc finger protein basonuclin-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85103,724,934 - 104,061,890 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5103,724,934 - 104,125,428 (-)EnsemblGRCr8
mRatBN7.2598,679,071 - 99,016,044 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl598,687,410 - 99,079,426 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5101,074,691 - 101,403,204 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05102,862,248 - 103,192,114 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05102,885,556 - 103,214,070 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05102,407,508 - 102,807,389 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5102,415,847 - 102,786,331 (-)Ensemblrn6Rnor6.0
Rnor_5.05106,423,637 - 106,815,661 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45103,143,810 - 103,474,243 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera597,217,719 - 97,546,321 (-)NCBICelera
RGSC_v3.15103,149,739 - 103,415,875 (-)NCBI
Cytogenetic Map5q31NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-Nitrobenzanthrone  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cytarabine  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
indometacin  (ISO)
lead diacetate  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
melphalan  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
panobinostat  (ISO)
paracetamol  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
PhIP  (ISO)
potassium chromate  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
tamoxifen  (ISO)
temozolomide  (ISO)
thapsigargin  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IEA,ISO)
fibrillar center  (IEA,ISO)
nuclear body  (IEA,ISO)
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15081112   PMID:19706529  


Genomics

Comparative Map Data
Bnc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85103,724,934 - 104,061,890 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5103,724,934 - 104,125,428 (-)EnsemblGRCr8
mRatBN7.2598,679,071 - 99,016,044 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl598,687,410 - 99,079,426 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5101,074,691 - 101,403,204 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05102,862,248 - 103,192,114 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05102,885,556 - 103,214,070 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05102,407,508 - 102,807,389 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5102,415,847 - 102,786,331 (-)Ensemblrn6Rnor6.0
Rnor_5.05106,423,637 - 106,815,661 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45103,143,810 - 103,474,243 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera597,217,719 - 97,546,321 (-)NCBICelera
RGSC_v3.15103,149,739 - 103,415,875 (-)NCBI
Cytogenetic Map5q31NCBI
BNC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38916,409,503 - 16,870,670 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl916,409,503 - 16,870,902 (-)Ensemblhg38GRCh38
GRCh37916,409,501 - 16,870,668 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36916,399,501 - 16,860,786 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34916,406,401 - 16,717,995NCBI
Celera916,336,475 - 16,798,503 (-)NCBICelera
Cytogenetic Map9p22.3-p22.2NCBI
HuRef916,372,931 - 16,833,878 (-)NCBIHuRef
CHM1_1916,409,018 - 16,870,617 (-)NCBICHM1_1
T2T-CHM13v2.0916,421,369 - 16,882,518 (-)NCBIT2T-CHM13v2.0
Bnc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39484,185,041 - 84,593,236 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl484,193,332 - 84,593,512 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38484,266,804 - 84,676,029 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl484,275,095 - 84,675,275 (-)Ensemblmm10GRCm38
MGSCv37483,918,446 - 84,320,990 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36483,746,326 - 84,017,564 (-)NCBIMGSCv36mm8
Celera482,782,012 - 83,066,290 (-)NCBICelera
Cytogenetic Map4C3- C4NCBI
cM Map439.76NCBI
Bnc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543419,165,912 - 19,515,720 (-)Ensembl
ChiLan1.0NW_00495543419,156,746 - 19,568,983 (-)NCBIChiLan1.0ChiLan1.0
BNC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211107,682,257 - 108,144,097 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19107,688,922 - 108,143,180 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0916,230,704 - 16,684,863 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1916,723,916 - 17,182,804 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl916,733,344 - 17,182,609 (-)EnsemblpanPan2panpan1.1
BNC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11136,511,581 - 36,950,111 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1136,514,166 - 36,950,679 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1135,156,775 - 35,602,037 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01137,416,595 - 37,862,856 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1137,425,576 - 37,862,888 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11136,110,194 - 36,556,402 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01135,907,504 - 36,353,053 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01136,560,617 - 37,005,520 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Bnc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947151,276,469 - 151,626,257 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936771747,496 - 1,036,122 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936771747,487 - 1,036,546 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BNC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1205,925,091 - 206,372,121 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11205,925,079 - 206,380,911 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21229,662,421 - 230,112,989 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BNC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11262,775,827 - 63,233,077 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1262,777,045 - 63,223,696 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603850,935,893 - 51,394,839 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bnc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473620,491,388 - 20,916,729 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473620,488,854 - 20,917,614 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Bnc2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1169,309,004 - 69,637,630 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Bnc2
1903 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:84
Count of miRNA genes:64
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000067389
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5102105698152749382Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)573779642118779642Rat
2303586Gluco52Glucose level QTL 522blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)5100826632145826632Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)584630798129630798Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)592583776137583776Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)584630798129630798Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1582212Livw2Liver weight QTL 23.50.0004liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)5104018576124314782Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)592583776137583776Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)598972960143972960Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)592583776137583776Rat
2303618Vencon1Ventilatory control QTL 13.8respiration trait (VT:0001943)oxygen consumption (CMO:0002169)5100826632145826632Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)573176602118176602Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584630798129630798Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)594034903139034903Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)569474415114474415Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)595062526133270832Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
1600362Mcs19Mammary carcinoma susceptibility QTL 192.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)582032155127032155Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)589369373134369373Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)569835120114835120Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)597492524133270832Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)573779642118779642Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)595062526133270832Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)592881678137881678Rat

Markers in Region
D5Uwm24  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr85104,029,498 - 104,029,638 (+)Marker Load Pipeline
Celera597,513,883 - 97,514,028UniSTS
Cytogenetic Map5q31UniSTS
UniSTS:224603  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2598,955,656 - 98,955,815 (+)MAPPERmRatBN7.2
Rnor_6.05102,683,111 - 102,683,269NCBIRnor6.0
Rnor_5.05106,691,185 - 106,691,343UniSTSRnor5.0
RGSC_v3.45103,412,463 - 103,412,621UniSTSRGSC3.4
Celera597,485,941 - 97,486,099UniSTS
Cytogenetic Map5q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
12 12 67 162 82 81 50 25 50 6 276 125 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000067389   ⟹   ENSRNOP00000063132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5103,733,579 - 104,104,494 (-)Ensembl
mRatBN7.2 Ensembl598,687,410 - 99,016,045 (-)Ensembl
Rnor_6.0 Ensembl5102,415,847 - 102,743,417 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086635   ⟹   ENSRNOP00000075619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5103,734,621 - 104,125,221 (-)Ensembl
mRatBN7.2 Ensembl598,688,758 - 99,079,379 (-)Ensembl
Rnor_6.0 Ensembl5102,418,661 - 102,786,331 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094698   ⟹   ENSRNOP00000092483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5103,724,934 - 104,125,243 (-)Ensembl
mRatBN7.2 Ensembl598,687,410 - 99,079,426 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118751   ⟹   ENSRNOP00000079078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5103,724,934 - 104,125,243 (-)Ensembl
mRatBN7.2 Ensembl598,687,410 - 99,079,426 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000132122   ⟹   ENSRNOP00000112129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5103,724,934 - 104,125,428 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000133529   ⟹   ENSRNOP00000107024
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5103,724,934 - 104,125,243 (-)Ensembl
RefSeq Acc Id: NM_001106666   ⟹   NP_001100136
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85103,724,934 - 104,061,890 (-)NCBI
mRatBN7.2598,679,071 - 99,016,044 (-)NCBI
Rnor_6.05102,415,847 - 102,743,417 (-)NCBI
Rnor_5.05106,423,637 - 106,815,661 (-)NCBI
RGSC_v3.45103,143,810 - 103,474,243 (-)RGD
Celera597,217,719 - 97,546,321 (-)RGD
Sequence:
RefSeq Acc Id: NM_001415824   ⟹   NP_001402753
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85103,724,934 - 104,008,172 (-)NCBI
mRatBN7.2598,679,071 - 98,962,317 (-)NCBI
RefSeq Acc Id: NP_001100136   ⟸   NM_001106666
- Peptide Label: isoform 1
- UniProtKB: D3ZZ22 (UniProtKB/TrEMBL),   A6J853 (UniProtKB/TrEMBL),   A0A8I5ZMQ2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000063132   ⟸   ENSRNOT00000067389
Ensembl Acc Id: ENSRNOP00000075619   ⟸   ENSRNOT00000086635
Ensembl Acc Id: ENSRNOP00000092483   ⟸   ENSRNOT00000094698
Ensembl Acc Id: ENSRNOP00000079078   ⟸   ENSRNOT00000118751
RefSeq Acc Id: NP_001402753   ⟸   NM_001415824
- Peptide Label: isoform 2
- UniProtKB: A0A8I5ZMQ2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000112129   ⟸   ENSRNOT00000132122
Ensembl Acc Id: ENSRNOP00000107024   ⟸   ENSRNOT00000133529
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZZ22-F1-model_v2 AlphaFold D3ZZ22 1-1106 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310694 AgrOrtholog
BioCyc Gene G2FUF-40862 BioCyc
Ensembl Genes ENSRNOG00000006553 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067389.4 UniProtKB/TrEMBL
  ENSRNOT00000086635.3 UniProtKB/TrEMBL
  ENSRNOT00000094698.2 UniProtKB/TrEMBL
  ENSRNOT00000118751.2 UniProtKB/TrEMBL
  ENSRNOT00000132122 ENTREZGENE
  ENSRNOT00000132122.1 UniProtKB/TrEMBL
  ENSRNOT00000133529 ENTREZGENE
  ENSRNOT00000133529.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Disconnected-like UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report rno:298189 UniProtKB/TrEMBL
NCBI Gene 298189 ENTREZGENE
PANTHER PTHR15021 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN BASONUCLIN-2 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-met UniProtKB/TrEMBL
PhenoGen Bnc2 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006553 RatGTEx
SMART ZnF_C2H2 UniProtKB/TrEMBL
UniProt A0A0G2KB20_RAT UniProtKB/TrEMBL
  A0A8I5ZMQ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AE08_RAT UniProtKB/TrEMBL
  A0ABK0LMG9_RAT UniProtKB/TrEMBL
  A0ABK0LQT9_RAT UniProtKB/TrEMBL
  A6J853 ENTREZGENE, UniProtKB/TrEMBL
  D3ZZ22 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-09 Bnc2  basonuclin zinc finger protein 2  Bnc2  basonuclin 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Bnc2  basonuclin 2   Bnc2_predicted  basonuclin 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Bnc2_predicted  basonuclin 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED