Cldn15 (claudin 15) - Rat Genome Database

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Gene: Cldn15 (claudin 15) Rattus norvegicus
Analyze
Symbol: Cldn15
Name: claudin 15
RGD ID: 1310678
Description: Predicted to enable paracellular tight junction channel activity. Predicted to be involved in several processes, including bicellular tight junction assembly; paracellular transport; and regulation of intestinal absorption. Predicted to be located in lateral plasma membrane and tight junction. Predicted to be active in bicellular tight junction and plasma membrane. Orthologous to human CLDN15 (claudin 15); PARTICIPATES IN hepatitis C pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: claudin-15; LOC304388
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,334,849 - 25,345,104 (-)NCBIGRCr8
mRatBN7.21219,698,167 - 19,708,419 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1219,698,337 - 19,706,819 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1220,837,753 - 20,845,310 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,450,458 - 21,458,015 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01220,515,654 - 20,523,070 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,738,198 - 22,750,392 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,738,195 - 22,748,860 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01224,749,982 - 24,759,973 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41220,823,334 - 20,845,306 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11220,813,183 - 20,833,795 (+)NCBI
Celera1221,475,263 - 21,482,160 (-)NCBICelera
Cytogenetic Map12q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cldn15Ratpleomorphic xanthoastrocytoma  ISOCLDN15 (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cldn15Ratmalignant mesothelioma  ISOCLDN15 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:28377727

1 to 20 of 60 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cldn15Rat1,2-dimethylhydrazine multiple interactionsISOCldn15 (Mus musculus)6480464[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CLDN15 mRNACTDPMID:22206623
Cldn15Rat1-Hydroxypyrene decreases expressionISOCLDN15 (Homo sapiens)64804641-hydroxypyrene results in decreased expression of CLDN15 mRNACTDPMID:21854004
Cldn15Rat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionEXP 64804642 more ...CTDPMID:27291303
Cldn15Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOCldn15 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of CLDN15 mRNACTDPMID:19770486
Cldn15Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of CLDN15 mRNACTDPMID:33387578
Cldn15Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of CLDN15 mRNACTDPMID:34747641
Cldn15Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCldn15 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of CLDN15 mRNACTDPMID:27913140
Cldn15Rat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of CLDN15 mRNACTDPMID:22808131
Cldn15Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOCldn15 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of CLDN15 mRNACTDPMID:21570461
Cldn15Rat2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISOCldn15 (Mus musculus)64804642 more ...CTDPMID:38648751
Cldn15Rat4,4'-sulfonyldiphenol multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of CLDN15 mRNACTDPMID:36041667
Cldn15Rat4-hydroxyphenyl retinamide decreases expressionISOCldn15 (Mus musculus)6480464Fenretinide results in decreased expression of CLDN15 mRNACTDPMID:28973697
Cldn15Ratacrylamide increases expressionISOCLDN15 (Homo sapiens)6480464Acrylamide results in increased expression of CLDN15 mRNACTDPMID:32763439
Cldn15Rataristolochic acid A increases expressionISOCLDN15 (Homo sapiens)6480464aristolochic acid I results in increased expression of CLDN15 mRNACTDPMID:33212167
Cldn15Ratatrazine decreases expressionISOCLDN15 (Homo sapiens)6480464Atrazine results in decreased expression of CLDN15 mRNACTDPMID:22378314
Cldn15Ratbenzo[a]pyrene multiple interactionsISOCldn15 (Mus musculus)6480464AHR protein affects the reaction [Benzo(a)pyrene affects the expression of CLDN15 mRNA]CTDPMID:22228805
Cldn15Ratbenzo[a]pyrene affects methylationISOCLDN15 (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of CLDN15 polyA tailCTDPMID:30157460
Cldn15Ratbenzo[a]pyrene increases expressionISOCldn15 (Mus musculus)6480464Benzo(a)pyrene results in increased expression of CLDN15 mRNACTDPMID:22228805
Cldn15Ratbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of CLDN15 mRNACTDPMID:25181051
Cldn15Ratbisphenol A multiple interactionsEXP 6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of CLDN15 mRNACTDPMID:36041667

1 to 20 of 60 rows

Biological Process
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cldn15Ratbicellular tight junction assembly involved_inIBAPANTHER:PTN000243505 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cldn15Ratcell adhesion involved_inIBAMGI:106925 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cldn15Ratmonoatomic ion transport involved_inIEAUniProtKB-KW:KW-04061600115GO_REF:0000043UniProtGO_REF:0000043
Cldn15Ratparacellular transport involved_inISSUniProtKB:P567461600115GO_REF:0000024UniProtGO_REF:0000024
Cldn15Ratparacellular transport involved_inIEAUniProtKB:P56746 and ensembl:ENSP000003088701600115GO_REF:0000107EnsemblGO_REF:0000107
Cldn15Ratparacellular transport involved_inIEAUniProtKB:Q9Z0S5 and ensembl:ENSMUSP000001067221600115GO_REF:0000107EnsemblGO_REF:0000107
Cldn15Ratparacellular transport involved_inISOCldn15 (Mus musculus)1624291 PMID:20727355 and PMID:23089202RGDPMID:20727355 and PMID:23089202
Cldn15Ratparacellular transport involved_inISOCLDN15 (Homo sapiens)1624291 PMID:31188544 more ...RGDPMID:31188544 more ...
Cldn15Ratregulation of intestinal D-glucose absorption involved_inISSUniProtKB:Q9Z0S51600115GO_REF:0000024UniProtGO_REF:0000024
Cldn15Ratregulation of intestinal D-glucose absorption involved_inIEAUniProtKB:Q9Z0S5 and ensembl:ENSMUSP000001067221600115GO_REF:0000107EnsemblGO_REF:0000107
Cldn15Ratregulation of intestinal D-glucose absorption involved_inISOCldn15 (Mus musculus)1624291 PMID:20727355 and PMID:23089202RGDPMID:20727355 and PMID:23089202
Cldn15Ratregulation of intestinal lipid absorption involved_inISSUniProtKB:Q9Z0S51600115GO_REF:0000024UniProtGO_REF:0000024
Cldn15Ratregulation of intestinal lipid absorption involved_inIEAUniProtKB:Q9Z0S5 and ensembl:ENSMUSP000001067221600115GO_REF:0000107EnsemblGO_REF:0000107
Cldn15Ratregulation of intestinal lipid absorption involved_inISOCldn15 (Mus musculus)1624291 PMID:23089202RGDPMID:23089202
1 to 14 of 14 rows

Cellular Component
1 to 17 of 17 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cldn15Ratanchoring junction located_inIEAUniProtKB-KW:KW-09651600115GO_REF:0000043UniProtGO_REF:0000043
Cldn15Ratbicellular tight junction located_inIEAInterPro:IPR006187 and InterPro:IPR0080941600115GO_REF:0000002InterProGO_REF:0000002
Cldn15Ratbicellular tight junction located_inIEAUniProtKB-KW:KW-07961600115GO_REF:0000043UniProtGO_REF:0000043
Cldn15Ratbicellular tight junction located_inIEAUniProtKB-SubCell:SL-02651600115GO_REF:0000044UniProtGO_REF:0000044
Cldn15Ratbicellular tight junction is_active_inIBAMGI:106925 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cldn15Ratlateral plasma membrane located_inISOCldn15 (Mus musculus)1624291 PMID:16651389RGDPMID:16651389
Cldn15Ratlateral plasma membrane located_inIEAUniProtKB:Q9Z0S5 and ensembl:ENSMUSP000001067221600115GO_REF:0000107EnsemblGO_REF:0000107
Cldn15Ratmembrane located_inIEAInterPro:IPR0040311600115GO_REF:0000002InterProGO_REF:0000002
Cldn15Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Cldn15Ratplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Cldn15Ratplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
Cldn15Ratplasma membrane is_active_inIBAMGI:1276109 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Cldn15Rattight junction located_inISSUniProtKB:P567461600115GO_REF:0000024UniProtGO_REF:0000024
Cldn15Rattight junction located_inIEAUniProtKB:Q9Z0S5 and ensembl:ENSMUSP000001067221600115GO_REF:0000107EnsemblGO_REF:0000107
Cldn15Rattight junction located_inIEAUniProtKB:P56746 and ensembl:ENSP000003088701600115GO_REF:0000107EnsemblGO_REF:0000107
Cldn15Rattight junction located_inISOCldn15 (Mus musculus)1624291 PMID:23089202RGDPMID:23089202
Cldn15Rattight junction located_inISOCLDN15 (Homo sapiens)1624291 PMID:31188544 and PMID:35650657RGDPMID:31188544 and PMID:35650657
1 to 17 of 17 rows

Molecular Function

  

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cldn15Rathepatitis C pathway  IEA 6907045 KEGGrno:05160

#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:16651389   PMID:18036336   PMID:33903003  



Cldn15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81225,334,849 - 25,345,104 (-)NCBIGRCr8
mRatBN7.21219,698,167 - 19,708,419 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1219,698,337 - 19,706,819 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1220,837,753 - 20,845,310 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,450,458 - 21,458,015 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01220,515,654 - 20,523,070 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01222,738,198 - 22,750,392 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1222,738,195 - 22,748,860 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01224,749,982 - 24,759,973 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41220,823,334 - 20,845,306 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11220,813,183 - 20,833,795 (+)NCBI
Celera1221,475,263 - 21,482,160 (-)NCBICelera
Cytogenetic Map12q12NCBI
CLDN15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387101,232,094 - 101,238,820 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7101,232,092 - 101,238,820 (-)EnsemblGRCh38hg38GRCh38
GRCh377100,875,375 - 100,882,101 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367100,662,094 - 100,667,836 (-)NCBINCBI36Build 36hg18NCBI36
Build 347100,470,513 - 100,474,466NCBI
Celera795,884,531 - 95,891,259 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef795,468,416 - 95,475,144 (-)NCBIHuRef
CHM1_17100,805,777 - 100,812,511 (-)NCBICHM1_1
T2T-CHM13v2.07102,555,557 - 102,562,283 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27100,233,760 - 100,240,488 (-)NCBI
Cldn15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395136,996,723 - 137,004,699 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5136,995,470 - 137,004,712 (+)EnsemblGRCm39 Ensembl
GRCm385136,967,869 - 136,975,845 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5136,966,616 - 136,975,858 (+)EnsemblGRCm38mm10GRCm38
MGSCv375137,443,739 - 137,451,710 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365137,252,496 - 137,260,467 (+)NCBIMGSCv36mm8
Celera5133,983,919 - 133,991,861 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map576.07NCBI
Cldn15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545616,062,046 - 16,069,540 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545616,062,044 - 16,067,612 (+)NCBIChiLan1.0ChiLan1.0
CLDN15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26119,245,327 - 119,252,795 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17167,509,956 - 167,517,417 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0793,373,450 - 93,380,912 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17106,613,604 - 106,620,479 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7106,613,604 - 106,620,479 (-)Ensemblpanpan1.1panPan2
CLDN15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.168,647,372 - 8,651,869 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl68,647,712 - 8,652,650 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha610,343,322 - 10,350,444 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.068,465,464 - 8,472,596 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl68,467,446 - 8,472,412 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.168,421,233 - 8,428,357 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.068,396,279 - 8,403,428 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.068,560,953 - 8,568,037 (+)NCBIUU_Cfam_GSD_1.0
Cldn15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344132,923,926 - 132,929,684 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365431,106,635 - 1,111,140 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365431,106,846 - 1,112,669 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl38,931,097 - 8,937,184 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.138,931,099 - 8,937,189 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CLDN15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12811,940,318 - 11,947,811 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2811,942,271 - 11,947,627 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660704,405,099 - 4,412,551 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cldn15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474016,057,712 - 16,063,264 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474016,056,823 - 16,063,250 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Cldn15
77 total Variants

Predicted Target Of
Summary Value
Count of predictions:46
Count of miRNA genes:45
Interacting mature miRNAs:45
Transcripts:ENSRNOT00000001923
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 52 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
61443Btemp2Thermal response to stress QTL 23.30.000094body temperature trait (VT:0005535)core body temperature (CMO:0001036)121502518320794014Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat

1 to 10 of 52 rows
RH142325  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21219,708,602 - 19,708,801 (+)MAPPERmRatBN7.2
Rnor_6.01222,750,530 - 22,750,728NCBIRnor6.0
Rnor_5.01224,760,096 - 24,760,294UniSTSRnor5.0
RGSC_v3.41220,821,523 - 20,821,721UniSTSRGSC3.4
Celera1221,484,028 - 21,484,226UniSTS
RH 3.4 Map12277.7UniSTS
Cytogenetic Map12q12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000001923   ⟹   ENSRNOP00000001923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1219,698,337 - 19,706,819 (-)Ensembl
Rnor_6.0 Ensembl1222,738,195 - 22,748,860 (-)Ensembl
RefSeq Acc Id: NM_001107135   ⟹   NP_001100605
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,334,849 - 25,343,625 (-)NCBI
mRatBN7.21219,698,167 - 19,706,946 (-)NCBI
Rnor_6.01222,739,324 - 22,748,662 (-)NCBI
Rnor_5.01224,749,982 - 24,759,973 (-)NCBI
RGSC_v3.41220,823,334 - 20,845,306 (+)RGD
Celera1221,475,263 - 21,482,160 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006249155   ⟹   XP_006249217
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81225,334,849 - 25,345,104 (-)NCBI
mRatBN7.21219,698,169 - 19,708,419 (-)NCBI
Rnor_6.01222,738,198 - 22,750,392 (-)NCBI
Rnor_5.01224,749,982 - 24,759,973 (-)NCBI
Sequence:
Protein RefSeqs NP_001100605 (Get FASTA)   NCBI Sequence Viewer  
  XP_006249217 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D3ZQJ0 (Get FASTA)   NCBI Sequence Viewer  
  EDM13299 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000001923
  ENSRNOP00000001923.5
RefSeq Acc Id: NP_001100605   ⟸   NM_001107135
- UniProtKB: D3ZQJ0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006249217   ⟸   XM_006249155
- Peptide Label: isoform X1
- UniProtKB: D3ZQJ0 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000001923   ⟸   ENSRNOT00000001923

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZQJ0-F1-model_v2 AlphaFold D3ZQJ0 1-227 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13698531
Promoter ID:EPDNEW_R9055
Type:initiation region
Name:Cldn15_1
Description:claudin 15
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01222,748,873 - 22,748,933EPDNEW


1 to 19 of 19 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-19669 BioCyc
Ensembl Genes ENSRNOG00000001419 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000001923 ENTREZGENE
  ENSRNOT00000001923.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.140.150 UniProtKB/Swiss-Prot
InterPro Claudin UniProtKB/Swiss-Prot
  Claudin15 UniProtKB/Swiss-Prot
  Claudin_CS UniProtKB/Swiss-Prot
  PMP22/EMP/MP20/Claudin UniProtKB/Swiss-Prot
KEGG Report rno:304388 UniProtKB/Swiss-Prot
NCBI Gene 304388 ENTREZGENE
PANTHER PTHR12002 UniProtKB/Swiss-Prot
Pfam PMP22_Claudin UniProtKB/Swiss-Prot
PhenoGen Cldn15 PhenoGen
PRINTS CLAUDIN UniProtKB/Swiss-Prot
  CLAUDIN15 UniProtKB/Swiss-Prot
PROSITE CLAUDIN UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001419 RatGTEx
UniProt CLD15_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 19 of 19 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Cldn15  claudin 15   Cldn15_predicted  claudin 15 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Cldn15_predicted  claudin 15 (predicted)      Symbol and Name status set to approved 70820 APPROVED