Fbf1 (Fas binding factor 1) - Rat Genome Database

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Pathways
Gene: Fbf1 (Fas binding factor 1) Rattus norvegicus
Analyze
Symbol: Fbf1
Name: Fas binding factor 1
RGD ID: 1310662
Description: Predicted to be involved in apical junction assembly; cilium assembly; and establishment of epithelial cell polarity. Predicted to be located in apical junction complex; keratin filament; and spindle pole. Predicted to be part of ciliary transition fiber. Predicted to be active in centriole and ciliary basal body. Orthologous to human FBF1 (Fas binding factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fas (TNFRSF6) binding factor 1; fas-binding factor 1; LOC287836
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,874,661 - 101,900,497 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10101,874,664 - 101,900,738 (-)EnsemblGRCr8
mRatBN7.210101,375,769 - 101,401,624 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,375,775 - 101,401,644 (-)EnsemblmRatBN7.2
Rnor_6.010104,692,791 - 104,718,630 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,692,755 - 104,718,621 (-)Ensemblrn6Rnor6.0
Rnor_5.010103,567,000 - 103,592,830 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410106,248,236 - 106,275,749 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1099,949,097 - 99,974,924 (-)NCBICelera
RGSC_v3.110106,264,658 - 106,287,589 (-)NCBI
Cytogenetic Map10q32.1NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
apical junction complex  (IEA,ISO)
centriole  (IBA,IEA,ISO)
centrosome  (IEA,ISO)
ciliary basal body  (IBA,IEA,ISO)
ciliary transition fiber  (IEA,ISO)
keratin filament  (IEA,ISO)
spindle pole  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18838552   PMID:21399614   PMID:23348840   PMID:24469809  


Genomics

Comparative Map Data
Fbf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,874,661 - 101,900,497 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10101,874,664 - 101,900,738 (-)EnsemblGRCr8
mRatBN7.210101,375,769 - 101,401,624 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10101,375,775 - 101,401,644 (-)EnsemblmRatBN7.2
Rnor_6.010104,692,791 - 104,718,630 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,692,755 - 104,718,621 (-)Ensemblrn6Rnor6.0
Rnor_5.010103,567,000 - 103,592,830 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410106,248,236 - 106,275,749 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1099,949,097 - 99,974,924 (-)NCBICelera
RGSC_v3.110106,264,658 - 106,287,589 (-)NCBI
Cytogenetic Map10q32.1NCBI
FBF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,909,574 - 75,941,042 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,909,574 - 75,941,140 (-)Ensemblhg38GRCh38
GRCh371773,905,655 - 73,937,123 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361771,418,213 - 71,448,714 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341771,417,519 - 71,448,816NCBI
Celera1770,496,670 - 70,527,169 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1769,332,265 - 69,362,764 (-)NCBIHuRef
CHM1_11773,971,562 - 74,002,056 (-)NCBICHM1_1
T2T-CHM13v2.01776,802,728 - 76,834,194 (-)NCBIT2T-CHM13v2.0
Fbf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911116,033,111 - 116,059,097 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11116,033,111 - 116,058,992 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3811116,142,285 - 116,168,271 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11116,142,285 - 116,168,166 (-)Ensemblmm10GRCm38
MGSCv3711116,003,599 - 116,029,492 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3611115,958,375 - 115,983,648 (-)NCBIMGSCv36mm8
Celera11127,905,376 - 127,931,871 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.93NCBI
Fbf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555066,327,466 - 6,354,653 (+)Ensembl
ChiLan1.0NW_0049555066,327,153 - 6,354,341 (+)NCBIChiLan1.0ChiLan1.0
FBF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,954,073 - 91,985,544 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,775,019 - 96,810,255 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,858,867 - 69,890,412 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11775,410,069 - 75,440,370 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1775,410,339 - 75,440,370 (-)EnsemblpanPan2panpan1.1
FBF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,683,040 - 4,704,507 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,683,511 - 4,705,417 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha95,363,504 - 5,384,962 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.095,353,457 - 5,374,921 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,353,639 - 5,394,014 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,393,354 - 5,414,723 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,502,946 - 5,524,408 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,563,225 - 5,584,894 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fbf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,299,723 - 5,324,379 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365941,087,230 - 1,112,243 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365941,087,580 - 1,112,229 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,482,498 - 5,510,024 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1125,482,576 - 5,510,971 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2125,438,984 - 5,467,383 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FBF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11645,746,009 - 45,781,766 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1645,747,250 - 45,785,877 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607716,499,378 - 16,530,695 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248015,792,938 - 5,818,713 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248015,791,900 - 5,818,623 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Fbf1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1967,896,311 - 67,922,131 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fbf1
70 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:242
Count of miRNA genes:98
Interacting mature miRNAs:108
Transcripts:ENSRNOT00000011560, ENSRNOT00000057781
Prediction methods:Microtar, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1065390777107713808Rat
1354641Bvd2Brain ventricular dilatation QTL 26.360.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)1093723381107556066Rat
8657410Bp374Blood pressure QTL 374heart left ventricle size trait (VT:0002753)heart left ventricle end-diastolic diameter (CMO:0000982)1067476608107713808Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063719161107713808Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1052269185107713808Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042546145107713808Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1058073360103073360Rat
12903252Cm113Cardiac mass QTL 1130.047heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068920187107713808Rat
2298548Neuinf7Neuroinflammation QTL 73.4nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1064939013107713808Rat
1302404Cia27Collagen induced arthritis QTL 272.60.0045joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)1076951790107713808Rat
1358915Stresp7Stress response QTL 73.52blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)1065307813107713808Rat
1300107Rf18Renal function QTL 183.41urine output (VT:0003620)timed urine volume (CMO:0000260)1079272424102982300Rat
70168Eae12Experimental allergic encephalomyelitis QTL 120.0009nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)1073599825107713808Rat
634320Niddm49Non-insulin dependent diabetes mellitus QTL 494.41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1089039175107713808Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1061843496106843496Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1054296227107713808Rat
6893366Bw106Body weight QTL 1060.30.47body mass (VT:0001259)body weight (CMO:0000012)1070698731107713808Rat
1576313Pia25Pristane induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
12903269Am15Aortic mass QTL 150.042aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
12903266Cm114Cardiac mass QTL 1140.02heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)1066817119107713808Rat
1578672Bmd16Bone mineral density QTL 166.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)1097202388107556066Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023948641107713808Rat
1576307Cia28Collagen induced arthritis QTL 28joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1096620293107713808Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040535708107713808Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062556066107556066Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040535708107713808Rat
1581559Eae18Experimental allergic encephalomyelitis QTL 180.00002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1066108888107555881Rat
70193Mcs7Mammary carcinoma susceptibility QTL 72.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
12880372Am12Aortic mass QTL 120.003aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)1066817119107713808Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062556066107556066Rat
61363Oia3Oil induced arthritis QTL 30.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1087807758107713808Rat
12880375Kidm66Kidney mass QTL 660.009kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
12880370Cm105Cardiac mass QTL 1050.008heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
1600367Mcs15Mammary carcinoma susceptibility QTL 154.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1072724423107713808Rat
12880371Cm106Cardiac mass QTL 1060.007heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)1066817119107713808Rat
631537Oia4Oil induced arthritis QTL 4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1076128947107713808Rat
1300137Bp186Blood pressure QTL 1863.57arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1091127270107556066Rat
634354Rends3Renal damage susceptibility QTL 30.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)1061997479106997479Rat
61436Cia5Collagen induced arthritis QTL 54.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1091727883107713808Rat
11565453Kidm58Kidney mass QTL 580.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1066817119107713808Rat
2301405Cm69Cardiac mass QTL 690.031heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)1066817119107713808Rat
1578663Bss18Bone structure and strength QTL 183.6femur width (VT:1000666)femoral neck width (CMO:0001695)1097202388107556066Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 18 18

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001430164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006220919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006247761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC136482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC169001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000011560   ⟹   ENSRNOP00000011560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10101,874,664 - 101,899,937 (-)Ensembl
mRatBN7.2 Ensembl10101,375,775 - 101,401,644 (-)Ensembl
Rnor_6.0 Ensembl10104,692,755 - 104,718,621 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102155   ⟹   ENSRNOP00000092550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10101,874,664 - 101,900,048 (-)Ensembl
mRatBN7.2 Ensembl10101,375,775 - 101,401,644 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116692   ⟹   ENSRNOP00000096585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10101,874,664 - 101,900,738 (-)Ensembl
mRatBN7.2 Ensembl10101,375,775 - 101,401,644 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000151074   ⟹   ENSRNOP00000099785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl10101,874,664 - 101,900,738 (-)Ensembl
RefSeq Acc Id: XM_006247760   ⟹   XP_006247822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,480 (-)NCBI
mRatBN7.210101,375,769 - 101,401,590 (-)NCBI
Rnor_6.010104,692,791 - 104,718,629 (-)NCBI
Rnor_5.010103,567,000 - 103,592,830 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006247761   ⟹   XP_006247823
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,480 (-)NCBI
mRatBN7.210101,375,769 - 101,401,590 (-)NCBI
Rnor_6.010104,692,791 - 104,718,629 (-)NCBI
Rnor_5.010103,567,000 - 103,592,830 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063270175   ⟹   XP_063126245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,480 (-)NCBI
RefSeq Acc Id: XM_063270176   ⟹   XP_063126246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,479 (-)NCBI
RefSeq Acc Id: XM_063270177   ⟹   XP_063126247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,481 (-)NCBI
RefSeq Acc Id: XM_063270178   ⟹   XP_063126248
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,480 (-)NCBI
RefSeq Acc Id: XM_063270179   ⟹   XP_063126249
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,480 (-)NCBI
RefSeq Acc Id: XM_063270180   ⟹   XP_063126250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,480 (-)NCBI
RefSeq Acc Id: XM_063270181   ⟹   XP_063126251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,454 (-)NCBI
RefSeq Acc Id: XM_063270182   ⟹   XP_063126252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,412 (-)NCBI
RefSeq Acc Id: XM_063270183   ⟹   XP_063126253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,899,150 (-)NCBI
RefSeq Acc Id: XM_063270184   ⟹   XP_063126254
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,452 (-)NCBI
RefSeq Acc Id: XM_063270185   ⟹   XP_063126255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,454 (-)NCBI
RefSeq Acc Id: XM_063270186   ⟹   XP_063126256
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,480 (-)NCBI
RefSeq Acc Id: XM_063270187   ⟹   XP_063126257
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,480 (-)NCBI
RefSeq Acc Id: XM_063270188   ⟹   XP_063126258
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,451 (-)NCBI
RefSeq Acc Id: XM_063270189   ⟹   XP_063126259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,463 (-)NCBI
RefSeq Acc Id: XM_063270190   ⟹   XP_063126260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,395 (-)NCBI
RefSeq Acc Id: XM_063270191   ⟹   XP_063126261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,900,446 (-)NCBI
RefSeq Acc Id: XM_063270192   ⟹   XP_063126262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,874,661 - 101,888,013 (-)NCBI
RefSeq Acc Id: XR_010055882
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr810101,879,387 - 101,900,497 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001417093 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417094 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417095 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417096 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417097 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417098 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417099 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417100 (Get FASTA)   NCBI Sequence Viewer  
  XP_006247822 (Get FASTA)   NCBI Sequence Viewer  
  XP_006247823 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126245 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126246 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126247 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126248 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126249 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126250 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126251 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126252 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126253 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126254 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126255 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126256 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126257 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126258 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126259 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126260 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126261 (Get FASTA)   NCBI Sequence Viewer  
  XP_063126262 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI69001 (Get FASTA)   NCBI Sequence Viewer  
  EDM06649 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011560
  ENSRNOP00000011560.7
  ENSRNOP00000092550
  ENSRNOP00000092550.2
  ENSRNOP00000096585
  ENSRNOP00000096585.2
  ENSRNOP00000099785
  ENSRNOP00000099785.1
RefSeq Acc Id: XP_006247822   ⟸   XM_006247760
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006247823   ⟸   XM_006247761
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSRNOP00000011560   ⟸   ENSRNOT00000011560
Ensembl Acc Id: ENSRNOP00000092550   ⟸   ENSRNOT00000102155
Ensembl Acc Id: ENSRNOP00000096585   ⟸   ENSRNOT00000116692
RefSeq Acc Id: XP_063126247   ⟸   XM_063270177
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063126245   ⟸   XM_063270175
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063126257   ⟸   XM_063270187
- Peptide Label: isoform X12
- UniProtKB: A0A8I6AQV1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126248   ⟸   XM_063270178
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063126256   ⟸   XM_063270186
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063126250   ⟸   XM_063270180
- Peptide Label: isoform X7
- UniProtKB: F1LSG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126249   ⟸   XM_063270179
- Peptide Label: isoform X7
- UniProtKB: F1LSG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126246   ⟸   XM_063270176
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063126259   ⟸   XM_063270189
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063126255   ⟸   XM_063270185
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063126251   ⟸   XM_063270181
- Peptide Label: isoform X7
- UniProtKB: F1LSG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126254   ⟸   XM_063270184
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063126258   ⟸   XM_063270188
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063126261   ⟸   XM_063270191
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063126252   ⟸   XM_063270182
- Peptide Label: isoform X7
- UniProtKB: F1LSG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126260   ⟸   XM_063270190
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063126253   ⟸   XM_063270183
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063126262   ⟸   XM_063270192
- Peptide Label: isoform X15
Ensembl Acc Id: ENSRNOP00000099785   ⟸   ENSRNOT00000151074
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LSG3-F1-model_v2 AlphaFold F1LSG3 1-1176 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697912
Promoter ID:EPDNEW_R8431
Type:multiple initiation site
Name:Fbf1_1
Description:Fas binding factor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.010104,718,568 - 104,718,628EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310662 AgrOrtholog
BioCyc Gene G2FUF-22624 BioCyc
Ensembl Genes ENSRNOG00000008577 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011560 ENTREZGENE
  ENSRNOT00000011560.10 UniProtKB/TrEMBL
  ENSRNOT00000102155 ENTREZGENE
  ENSRNOT00000102155.2 UniProtKB/TrEMBL
  ENSRNOT00000116692 ENTREZGENE
  ENSRNOT00000116692.2 UniProtKB/TrEMBL
  ENSRNOT00000151074 ENTREZGENE
  ENSRNOT00000151074.1 UniProtKB/TrEMBL
InterPro FBF1 UniProtKB/TrEMBL
  FBF1_C UniProtKB/TrEMBL
NCBI Gene 287836 ENTREZGENE
PANTHER FAS-BINDING FACTOR 1 UniProtKB/TrEMBL
  PTHR33689 UniProtKB/TrEMBL
Pfam FBF1 UniProtKB/TrEMBL
PhenoGen Fbf1 PhenoGen
RatGTEx ENSRNOG00000008577 RatGTEx
UniProt A0A8I6AQV1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AVT6 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LEA0_RAT UniProtKB/TrEMBL
  B5DFB8_RAT UniProtKB/TrEMBL
  F1LSG3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-27 Fbf1  Fas binding factor 1  Fbf1  Fas (TNFRSF6) binding factor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Fbf1  Fas (TNFRSF6) binding factor 1   Fbf1_predicted  Fas (TNFRSF6) binding factor 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Fbf1_predicted  Fas (TNFRSF6) binding factor 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED